RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 PIGSQ96S52 555 aa12.44□□□□□ -0.42
SMARCA4-213ENST00000587988 LZTS2Q9BRK4 669 aa12.44□□□□□ -0.42
SMARCA4-213ENST00000587988 SPZ1Q9BXG8 430 aa12.44□□□□□ -0.42
SMARCA4-213ENST00000587988 MORF4L1Q9UBU8 362 aa12.44□□□□□ -0.42
SMARCA4-213ENST00000587988 ZNF214Q9UL59 606 aaPredicted RBP12.44□□□□□ -0.42
SMARCA4-213ENST00000587988 CEP350Q5VT06 3117 aa12.44□□□□□ -0.42
SMARCA4-213ENST00000587988 CNTNAP5Q8WYK1 1306 aa12.43□□□□□ -0.42
SMARCA4-213ENST00000587988 hCG_1642624A0A1W2PR95 340 aa12.43□□□□□ -0.42
SMARCA4-213ENST00000587988 FOXN1O15353 648 aa12.43□□□□□ -0.42
SMARCA4-213ENST00000587988 HSPA1AP0DMV8 641 aaKnown RBP12.43□□□□□ -0.42
SMARCA4-213ENST00000587988 HSPA1BP0DMV9 641 aaKnown RBP12.43□□□□□ -0.42
SMARCA4-213ENST00000587988 SMARCA1P28370 1054 aa12.43□□□□□ -0.42
SMARCA4-213ENST00000587988 PLS1Q14651 629 aa12.43□□□□□ -0.42
SMARCA4-213ENST00000587988 PPP2R5BQ15173 497 aa12.43□□□□□ -0.42
SMARCA4-213ENST00000587988 QRICH1Q2TAL8 776 aa12.43□□□□□ -0.42
SMARCA4-213ENST00000587988 HOMER1Q86YM7 354 aa12.43□□□□□ -0.42
SMARCA4-213ENST00000587988 GPRC5AQ8NFJ5 357 aa12.43□□□□□ -0.42
SMARCA4-213ENST00000587988 AGBL1Q96MI9 1066 aa12.43□□□□□ -0.42
SMARCA4-213ENST00000587988 SPATC1LQ9H0A9 340 aa12.43□□□□□ -0.42
SMARCA4-213ENST00000587988 PORCNQ9H237 461 aa12.43□□□□□ -0.42
SMARCA4-213ENST00000587988 RIPK3Q9Y572 518 aa12.43□□□□□ -0.42
SMARCA4-213ENST00000587988 CTDP1Q9Y5B0 961 aaPredicted RBP12.43□□□□□ -0.42
SMARCA4-213ENST00000587988 PCNTO95613 3336 aa12.43□□□□□ -0.42
SMARCA4-213ENST00000587988 ZSWIM8A7E2V4 1837 aa12.42□□□□□ -0.42
SMARCA4-213ENST00000587988 CCDC196A0A1B0GTZ2 297 aa12.42□□□□□ -0.42
SMARCA4-213ENST00000587988 ATP2A1O14983 1001 aa12.42□□□□□ -0.42
SMARCA4-213ENST00000587988 PPP1R11O60927 126 aaPredicted RBP12.42□□□□□ -0.42
SMARCA4-213ENST00000587988 CTDNEP1O95476 244 aa12.42□□□□□ -0.42
SMARCA4-213ENST00000587988 FDX1P10109 184 aa12.42□□□□□ -0.42
SMARCA4-213ENST00000587988 CTGFP29279 349 aa12.42□□□□□ -0.42
SMARCA4-213ENST00000587988 STAT3P40763 770 aa12.42□□□□□ -0.42
SMARCA4-213ENST00000587988 SLC4A3P48751 1232 aa12.42□□□□□ -0.42
SMARCA4-213ENST00000587988 CCDC83Q8IWF9 413 aa12.42□□□□□ -0.42
SMARCA4-213ENST00000587988 IL27Q8NEV9 243 aa12.42□□□□□ -0.42
SMARCA4-213ENST00000587988 PHKBQ93100 1093 aa12.42□□□□□ -0.42
SMARCA4-213ENST00000587988 GTF3C6Q969F1 213 aa12.42□□□□□ -0.42
SMARCA4-213ENST00000587988 TMX3Q96JJ7 454 aa12.42□□□□□ -0.42
SMARCA4-213ENST00000587988 ZSCAN31Q96LW9 406 aaPredicted RBP12.42□□□□□ -0.42
SMARCA4-213ENST00000587988 MOV10L1Q9BXT6 1211 aaKnown RBP12.42□□□□□ -0.42
SMARCA4-213ENST00000587988 ARHGAP39Q9C0H5 1083 aa12.42□□□□□ -0.42
SMARCA4-213ENST00000587988 V9GY48 417 aaPredicted RBP12.42□□□□□ -0.42
SMARCA4-213ENST00000587988 MYH6P13533 1939 aa12.42□□□□□ -0.42
SMARCA4-213ENST00000587988 ZBTB5O15062 677 aa12.41□□□□□ -0.42
SMARCA4-213ENST00000587988 ICAM1P05362 532 aa12.41□□□□□ -0.42
SMARCA4-213ENST00000587988 HSPA8P11142 646 aaKnown RBP12.41□□□□□ -0.42
SMARCA4-213ENST00000587988 IFNAR1P17181 557 aa12.41□□□□□ -0.42
SMARCA4-213ENST00000587988 OAZ1P54368 228 aa12.41□□□□□ -0.42
SMARCA4-213ENST00000587988 SP3Q02447 781 aa12.41□□□□□ -0.42
SMARCA4-213ENST00000587988 SNRNP48Q6IEG0 339 aaKnown RBP12.41□□□□□ -0.42
SMARCA4-213ENST00000587988 RIOX2Q8IUF8 465 aa12.41□□□□□ -0.42
SMARCA4-213ENST00000587988 ZNF296Q8WUU4 475 aaPredicted RBP12.41□□□□□ -0.42
SMARCA4-213ENST00000587988 RRP36Q96EU6 259 aaKnown RBP12.41□□□□□ -0.42
SMARCA4-213ENST00000587988 TEX13BQ9BXU2 312 aa12.41□□□□□ -0.42
SMARCA4-213ENST00000587988 EFCC1Q9HA90 598 aa12.41□□□□□ -0.42
SMARCA4-213ENST00000587988 CCPG1Q9ULG6 757 aa12.41□□□□□ -0.42
SMARCA4-213ENST00000587988 PNMA6FA0A0J9YX94 578 aa12.4□□□□□ -0.42
SMARCA4-213ENST00000587988 CPLX1O14810 134 aa12.4□□□□□ -0.42
SMARCA4-213ENST00000587988 PRPF3O43395 683 aaKnown RBP12.4□□□□□ -0.42
SMARCA4-213ENST00000587988 FKTNO75072 461 aa12.4□□□□□ -0.42
SMARCA4-213ENST00000587988 ALAS1P13196 640 aa12.4□□□□□ -0.42
SMARCA4-213ENST00000587988 ERCC3P19447 782 aa12.4□□□□□ -0.42
SMARCA4-213ENST00000587988 MCM2P49736 904 aa12.4□□□□□ -0.42
SMARCA4-213ENST00000587988 LACTBP83111 547 aaPredicted RBP12.4□□□□□ -0.42
SMARCA4-213ENST00000587988 USH1GQ495M9 461 aa12.4□□□□□ -0.42
SMARCA4-213ENST00000587988 NOM1Q5C9Z4 860 aaKnown RBP12.4□□□□□ -0.42
SMARCA4-213ENST00000587988 MUM1L1Q5H9M0 696 aa12.4□□□□□ -0.42
SMARCA4-213ENST00000587988 NCAPG2Q86XI2 1143 aa12.4□□□□□ -0.42
SMARCA4-213ENST00000587988 FBXO11Q86XK2 927 aa12.4□□□□□ -0.42
SMARCA4-213ENST00000587988 NSUN7Q8NE18 718 aaKnown RBP12.4□□□□□ -0.42
SMARCA4-213ENST00000587988 COA7Q96BR5 231 aa12.4□□□□□ -0.42
SMARCA4-213ENST00000587988 SLC26A6Q9BXS9 759 aa12.4□□□□□ -0.42
SMARCA4-213ENST00000587988 SH2B1Q9NRF2 756 aaPredicted RBP12.4□□□□□ -0.42
SMARCA4-213ENST00000587988 MGAMO43451 1857 aa12.4□□□□□ -0.42
SMARCA4-213ENST00000587988 DOCK3Q8IZD9 2030 aa12.39□□□□□ -0.43
SMARCA4-213ENST00000587988 FMNL1O95466 1100 aaPredicted RBP12.39□□□□□ -0.43
SMARCA4-213ENST00000587988 LBX1P52954 281 aa12.39□□□□□ -0.43
SMARCA4-213ENST00000587988 CCNA1P78396 465 aa12.39□□□□□ -0.43
SMARCA4-213ENST00000587988 SSRP1Q08945 709 aaKnown RBP12.39□□□□□ -0.43
SMARCA4-213ENST00000587988 PKN1Q16512 942 aa12.39□□□□□ -0.43
SMARCA4-213ENST00000587988 SHCBP1Q8NEM2 672 aa12.39□□□□□ -0.43
SMARCA4-213ENST00000587988 CD99L2Q8TCZ2 262 aa12.39□□□□□ -0.43
SMARCA4-213ENST00000587988 SNX21Q969T3 373 aa12.39□□□□□ -0.43
SMARCA4-213ENST00000587988 TRERF1Q96PN7 1200 aa12.39□□□□□ -0.43
SMARCA4-213ENST00000587988 AMNQ9BXJ7 453 aa12.39□□□□□ -0.43
SMARCA4-213ENST00000587988 HOMER2Q9NSB8 354 aa12.39□□□□□ -0.43
SMARCA4-213ENST00000587988 CASP8AP2Q9UKL3 1982 aa12.38□□□□□ -0.43
SMARCA4-213ENST00000587988 JAK2O60674 1132 aa12.38□□□□□ -0.43
SMARCA4-213ENST00000587988 SLC25A27O95847 323 aa12.38□□□□□ -0.43
SMARCA4-213ENST00000587988 FDPSP14324 419 aaKnown RBP12.38□□□□□ -0.43
SMARCA4-213ENST00000587988 PSMC4P43686 418 aa12.38□□□□□ -0.43
SMARCA4-213ENST00000587988 CTCFP49711 727 aaPredicted RBP12.38□□□□□ -0.43
SMARCA4-213ENST00000587988 WDR78Q5VTH9 848 aa12.38□□□□□ -0.43
SMARCA4-213ENST00000587988 WWC2Q6AWC2 1192 aa12.38□□□□□ -0.43
SMARCA4-213ENST00000587988 GPR142Q7Z601 462 aa12.38□□□□□ -0.43
SMARCA4-213ENST00000587988 CLEC4DQ8WXI8 215 aa12.38□□□□□ -0.43
SMARCA4-213ENST00000587988 GPKOWQ92917 476 aaPredicted RBP eCLIP12.38□□□□□ -0.43
SMARCA4-213ENST00000587988 TRIM47Q96LD4 638 aa12.38□□□□□ -0.43
SMARCA4-213ENST00000587988 AIFM3Q96NN9 605 aa12.38□□□□□ -0.43
SMARCA4-213ENST00000587988 RNF26Q9BY78 433 aaPredicted RBP12.38□□□□□ -0.43
SMARCA4-213ENST00000587988 RNF146Q9NTX7 359 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms