RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 EPHB4P54760 987 aa11.86□□□□□ -0.51
SS18-207ENST00000577636 GRIN2CQ14957 1233 aa11.86□□□□□ -0.51
SS18-207ENST00000577636 NFKBIBQ15653 356 aa11.86□□□□□ -0.51
SS18-207ENST00000577636 SHCBP1Q8NEM2 672 aa11.86□□□□□ -0.51
SS18-207ENST00000577636 ATG4CQ96DT6 458 aa11.86□□□□□ -0.51
SS18-207ENST00000577636 MAML3Q96JK9 1138 aa11.86□□□□□ -0.51
SS18-207ENST00000577636 MMP19Q99542 508 aa11.86□□□□□ -0.51
SS18-207ENST00000577636 CRNKL1Q9BZJ0 848 aaKnown RBP11.86□□□□□ -0.51
SS18-207ENST00000577636 RNF41Q9H4P4 317 aaPredicted RBP11.86□□□□□ -0.51
SS18-207ENST00000577636 TMEM39AQ9NV64 488 aa11.86□□□□□ -0.51
SS18-207ENST00000577636 SMC3Q9UQE7 1217 aa11.86□□□□□ -0.51
SS18-207ENST00000577636 DNAH12Q6ZR08 3092 aa11.86□□□□□ -0.51
SS18-207ENST00000577636 IGHA2P01877 340 aa11.85□□□□□ -0.51
SS18-207ENST00000577636 PGK2P07205 417 aa11.85□□□□□ -0.51
SS18-207ENST00000577636 TAL1P17542 331 aaPredicted RBP11.85□□□□□ -0.51
SS18-207ENST00000577636 MCM5P33992 734 aa11.85□□□□□ -0.51
SS18-207ENST00000577636 DDIT3P35638 169 aa11.85□□□□□ -0.51
SS18-207ENST00000577636 SNX17Q15036 470 aa11.85□□□□□ -0.51
SS18-207ENST00000577636 Q6ZUG5 572 aa11.85□□□□□ -0.51
SS18-207ENST00000577636 RNF180Q86T96 592 aa11.85□□□□□ -0.51
SS18-207ENST00000577636 CLEC10AQ8IUN9 316 aa11.85□□□□□ -0.51
SS18-207ENST00000577636 IFNL3Q8IZI9 196 aa11.85□□□□□ -0.51
SS18-207ENST00000577636 MB21D1Q8N884 522 aa11.85□□□□□ -0.51
SS18-207ENST00000577636 SLC44A5Q8NCS7 719 aa11.85□□□□□ -0.51
SS18-207ENST00000577636 SDR42E1Q8WUS8 393 aa11.85□□□□□ -0.51
SS18-207ENST00000577636 DYNLL2Q96FJ2 89 aa11.85□□□□□ -0.51
SS18-207ENST00000577636 MROH8Q9H579 483 aa11.85□□□□□ -0.51
SS18-207ENST00000577636 CNNM2Q9H8M5 875 aa11.85□□□□□ -0.51
SS18-207ENST00000577636 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.84□□□□□ -0.51
SS18-207ENST00000577636 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.84□□□□□ -0.51
SS18-207ENST00000577636 SLC3A2P08195 630 aaKnown RBP11.84□□□□□ -0.51
SS18-207ENST00000577636 HAND2P61296 217 aa11.84□□□□□ -0.51
SS18-207ENST00000577636 FPGSQ05932 587 aa11.84□□□□□ -0.51
SS18-207ENST00000577636 GABPAQ06546 454 aa11.84□□□□□ -0.51
SS18-207ENST00000577636 AMOTL1Q8IY63 956 aa11.84□□□□□ -0.51
SS18-207ENST00000577636 LCORLQ8N3X6 602 aa11.84□□□□□ -0.51
SS18-207ENST00000577636 USP38Q8NB14 1042 aa11.84□□□□□ -0.51
SS18-207ENST00000577636 LENG1Q96BZ8 264 aaPredicted RBP11.84□□□□□ -0.51
SS18-207ENST00000577636 RIOK1Q9BRS2 568 aaKnown RBP11.84□□□□□ -0.51
SS18-207ENST00000577636 KRT23Q9C075 422 aa11.84□□□□□ -0.51
SS18-207ENST00000577636 ARHGEF10LQ9HCE6 1279 aa11.84□□□□□ -0.51
SS18-207ENST00000577636 PHF24Q9UPV7 400 aa11.84□□□□□ -0.51
SS18-207ENST00000577636 KIF3AQ9Y496 699 aa11.84□□□□□ -0.51
SS18-207ENST00000577636 MAST2Q6P0Q8 1798 aa11.84□□□□□ -0.51
SS18-207ENST00000577636 LAMA2P24043 3122 aaKnown RBP11.84□□□□□ -0.51
SS18-207ENST00000577636 MYH1P12882 1939 aa11.84□□□□□ -0.51
SS18-207ENST00000577636 WDR19Q8NEZ3 1342 aa11.84□□□□□ -0.51
SS18-207ENST00000577636 FRMPD3Q5JV73 1810 aa11.83□□□□□ -0.51
SS18-207ENST00000577636 MYO5AQ9Y4I1 1855 aaKnown RBP11.83□□□□□ -0.52
SS18-207ENST00000577636 A0A1W2PQ45 241 aaPredicted RBP11.83□□□□□ -0.52
SS18-207ENST00000577636 A0A1W2PQY0 241 aa11.83□□□□□ -0.52
SS18-207ENST00000577636 DDX11L8A8MPP1 907 aa11.83□□□□□ -0.52
SS18-207ENST00000577636 SLC25A27O95847 323 aa11.83□□□□□ -0.52
SS18-207ENST00000577636 AKR1B1P15121 316 aa11.83□□□□□ -0.52
SS18-207ENST00000577636 PDCP20941 246 aa11.83□□□□□ -0.52
SS18-207ENST00000577636 DNAJB2P25686 324 aa11.83□□□□□ -0.52
SS18-207ENST00000577636 TMEM132BQ14DG7 1078 aa11.83□□□□□ -0.52
SS18-207ENST00000577636 C1orf53Q5VUE5 145 aa11.83□□□□□ -0.52
SS18-207ENST00000577636 GIMAP6Q6P9H5 292 aa11.83□□□□□ -0.52
SS18-207ENST00000577636 MFSD6Q6ZSS7 791 aa11.83□□□□□ -0.52
SS18-207ENST00000577636 TMEM179Q6ZVK1 233 aa11.83□□□□□ -0.52
SS18-207ENST00000577636 CCDC83Q8IWF9 413 aa11.83□□□□□ -0.52
SS18-207ENST00000577636 ABRAQ8N0Z2 381 aa11.83□□□□□ -0.52
SS18-207ENST00000577636 VTI1AQ96AJ9 217 aa11.83□□□□□ -0.52
SS18-207ENST00000577636 ZNF576Q9H609 170 aa11.83□□□□□ -0.52
SS18-207ENST00000577636 CDK5RAP2Q96SN8 1893 aa11.83□□□□□ -0.52
SS18-207ENST00000577636 VCANP13611 3396 aa11.82□□□□□ -0.52
SS18-207ENST00000577636 EYSQ5T1H1 3165 aa11.82□□□□□ -0.52
SS18-207ENST00000577636 GSG1L2A8MUP6 293 aa11.82□□□□□ -0.52
SS18-207ENST00000577636 DCDC2CA8MYV0 355 aa11.82□□□□□ -0.52
SS18-207ENST00000577636 KIAA0355O15063 1070 aa11.82□□□□□ -0.52
SS18-207ENST00000577636 PRC1O43663 620 aa11.82□□□□□ -0.52
SS18-207ENST00000577636 DHX16O60231 1041 aaKnown RBP11.82□□□□□ -0.52
SS18-207ENST00000577636 COL9A1P20849 921 aa11.82□□□□□ -0.52
SS18-207ENST00000577636 EXOSC10Q01780 885 aaKnown RBP11.82□□□□□ -0.52
SS18-207ENST00000577636 ICA1Q05084 483 aa11.82□□□□□ -0.52
SS18-207ENST00000577636 KCTD2Q14681 263 aa11.82□□□□□ -0.52
SS18-207ENST00000577636 SART3Q15020 963 aaKnown RBP11.82□□□□□ -0.52
SS18-207ENST00000577636 TJAP1Q5JTD0 557 aa11.82□□□□□ -0.52
SS18-207ENST00000577636 STOX1Q6ZVD7 989 aa11.82□□□□□ -0.52
SS18-207ENST00000577636 SIAH1Q8IUQ4 282 aa11.82□□□□□ -0.52
SS18-207ENST00000577636 BRF1Q92994 677 aa11.82□□□□□ -0.52
SS18-207ENST00000577636 TIFAQ96CG3 184 aa11.82□□□□□ -0.52
SS18-207ENST00000577636 TCEANC2Q96MN5 208 aa11.82□□□□□ -0.52
SS18-207ENST00000577636 TINF2Q9BSI4 451 aa11.82□□□□□ -0.52
SS18-207ENST00000577636 VCPKMTQ9H867 229 aa11.82□□□□□ -0.52
SS18-207ENST00000577636 STARD7Q9NQZ5 370 aa11.82□□□□□ -0.52
SS18-207ENST00000577636 TOMM22Q9NS69 142 aa11.82□□□□□ -0.52
SS18-207ENST00000577636 ATP8A2Q9NTI2 1148 aa11.82□□□□□ -0.52
SS18-207ENST00000577636 FBXO28Q9NVF7 368 aa11.82□□□□□ -0.52
SS18-207ENST00000577636 TPCN1Q9ULQ1 816 aa11.82□□□□□ -0.52
SS18-207ENST00000577636 NAP1L2Q9ULW6 460 aaPredicted RBP11.82□□□□□ -0.52
SS18-207ENST00000577636 TMX2Q9Y320 296 aa11.82□□□□□ -0.52
SS18-207ENST00000577636 TAF6LQ9Y6J9 622 aa11.82□□□□□ -0.52
SS18-207ENST00000577636 TMEM265A0A087WTH1 108 aa11.81□□□□□ -0.52
SS18-207ENST00000577636 ERICH2A1L162 156 aa11.81□□□□□ -0.52
SS18-207ENST00000577636 TNFRSF10AO00220 468 aa11.81□□□□□ -0.52
SS18-207ENST00000577636 FOXP2O15409 715 aa11.81□□□□□ -0.52
SS18-207ENST00000577636 PRKAB2O43741 272 aa11.81□□□□□ -0.52
SS18-207ENST00000577636 PCP11498 1178 aaKnown RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms