RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 CCDC151A5D8V7 595 aa14.94□□□□□ -0.02
VPS4A-204ENST00000566354 PPARAQ07869 468 aa14.94□□□□□ -0.02
VPS4A-204ENST00000566354 MTF1Q14872 753 aa14.94□□□□□ -0.02
VPS4A-204ENST00000566354 DACT2Q5SW24 774 aa14.94□□□□□ -0.02
VPS4A-204ENST00000566354 STRIP1Q5VSL9 837 aa14.94□□□□□ -0.02
VPS4A-204ENST00000566354 FHDC1Q9C0D6 1143 aaPredicted RBP14.94□□□□□ -0.02
VPS4A-204ENST00000566354 TTF2Q9UNY4 1162 aaKnown RBP14.94□□□□□ -0.02
VPS4A-204ENST00000566354 USP17L3A6NCW0 530 aa14.94□□□□□ -0.02
VPS4A-204ENST00000566354 USP17L4A6NCW7 530 aa14.94□□□□□ -0.02
VPS4A-204ENST00000566354 NFKBIEO00221 500 aa14.94□□□□□ -0.02
VPS4A-204ENST00000566354 POLR3GO15318 223 aaPredicted RBP14.94□□□□□ -0.02
VPS4A-204ENST00000566354 KIF5CO60282 957 aa14.94□□□□□ -0.02
VPS4A-204ENST00000566354 KRT2P35908 639 aa14.94□□□□□ -0.02
VPS4A-204ENST00000566354 SCNN1DP51172 638 aa14.94□□□□□ -0.02
VPS4A-204ENST00000566354 SMC1AQ14683 1233 aaKnown RBP14.94□□□□□ -0.02
VPS4A-204ENST00000566354 BRD3Q15059 726 aa14.94□□□□□ -0.02
VPS4A-204ENST00000566354 SEC23AQ15436 765 aa14.94□□□□□ -0.02
VPS4A-204ENST00000566354 TMED8Q6PL24 325 aaPredicted RBP14.94□□□□□ -0.02
VPS4A-204ENST00000566354 USP17L1Q7RTZ2 530 aa14.94□□□□□ -0.02
VPS4A-204ENST00000566354 SRGAP1Q7Z6B7 1085 aa14.94□□□□□ -0.02
VPS4A-204ENST00000566354 SH3RF3Q8TEJ3 882 aaPredicted RBP14.94□□□□□ -0.02
VPS4A-204ENST00000566354 ESR2Q92731 530 aa14.94□□□□□ -0.02
VPS4A-204ENST00000566354 CCDC51Q96ER9 411 aa14.94□□□□□ -0.02
VPS4A-204ENST00000566354 EPSTI1Q96J88 318 aa14.94□□□□□ -0.02
VPS4A-204ENST00000566354 ADAMTSL1Q8N6G6 1762 aa14.93□□□□□ -0.02
VPS4A-204ENST00000566354 A0A087X0B3 334 aa14.93□□□□□ -0.02
VPS4A-204ENST00000566354 SMIM22K7EJ46 135 aa14.93□□□□□ -0.02
VPS4A-204ENST00000566354 CD44P16070 742 aaKnown RBP14.93□□□□□ -0.02
VPS4A-204ENST00000566354 BTDP43251 543 aa14.93□□□□□ -0.02
VPS4A-204ENST00000566354 AFMP43652 599 aa14.93□□□□□ -0.02
VPS4A-204ENST00000566354 KLHL10Q6JEL2 608 aa14.93□□□□□ -0.02
VPS4A-204ENST00000566354 RAD9BQ6WBX8 426 aa14.93□□□□□ -0.02
VPS4A-204ENST00000566354 RASGRP2Q7LDG7 609 aa14.93□□□□□ -0.02
VPS4A-204ENST00000566354 CNGA4Q8IV77 575 aa14.93□□□□□ -0.02
VPS4A-204ENST00000566354 PHF20Q9BVI0 1012 aa14.93□□□□□ -0.02
VPS4A-204ENST00000566354 FUT8Q9BYC5 575 aa14.93□□□□□ -0.02
VPS4A-204ENST00000566354 TAOK3Q9H2K8 898 aa14.93□□□□□ -0.02
VPS4A-204ENST00000566354 LZTFL1Q9NQ48 299 aa14.93□□□□□ -0.02
VPS4A-204ENST00000566354 ANAPC4Q9UJX5 808 aa14.93□□□□□ -0.02
VPS4A-204ENST00000566354 PRPF3O43395 683 aaKnown RBP14.93□□□□□ -0.02
VPS4A-204ENST00000566354 LDHCP07864 332 aa14.93□□□□□ -0.02
VPS4A-204ENST00000566354 CHMP4BP1P59074 171 aa14.93□□□□□ -0.02
VPS4A-204ENST00000566354 DPYDQ12882 1025 aa14.93□□□□□ -0.02
VPS4A-204ENST00000566354 KIAA0825Q8IV33 1275 aa14.93□□□□□ -0.02
VPS4A-204ENST00000566354 CEP112Q8N8E3 955 aa14.93□□□□□ -0.02
VPS4A-204ENST00000566354 SYMPKQ92797 1274 aaKnown RBP14.93□□□□□ -0.02
VPS4A-204ENST00000566354 IRX2Q9BZI1 471 aaPredicted RBP14.93□□□□□ -0.02
VPS4A-204ENST00000566354 CDC23Q9UJX2 597 aa14.93□□□□□ -0.02
VPS4A-204ENST00000566354 SUGT1Q9Y2Z0 365 aa14.93□□□□□ -0.02
VPS4A-204ENST00000566354 TNKSO95271 1327 aa14.92□□□□□ -0.02
VPS4A-204ENST00000566354 ITIH6Q6UXX5 1313 aa14.92□□□□□ -0.02
VPS4A-204ENST00000566354 GPR75-ASB3A0A0A6YYF3 556 aa14.92□□□□□ -0.02
VPS4A-204ENST00000566354 MFAP3LO75121 409 aa14.92□□□□□ -0.02
VPS4A-204ENST00000566354 OAS2P29728 719 aaKnown RBP14.92□□□□□ -0.02
VPS4A-204ENST00000566354 GPS2Q13227 327 aa14.92□□□□□ -0.02
VPS4A-204ENST00000566354 PKN1Q16512 942 aa14.92□□□□□ -0.02
VPS4A-204ENST00000566354 CPLX3Q8WVH0 158 aa14.92□□□□□ -0.02
VPS4A-204ENST00000566354 CRNKL1Q9BZJ0 848 aaKnown RBP14.92□□□□□ -0.02
VPS4A-204ENST00000566354 VPS54Q9P1Q0 977 aa14.92□□□□□ -0.02
VPS4A-204ENST00000566354 DAGLAQ9Y4D2 1042 aa14.92□□□□□ -0.02
VPS4A-204ENST00000566354 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.92□□□□□ -0.02
VPS4A-204ENST00000566354 GAKO14976 1311 aa14.92□□□□□ -0.02
VPS4A-204ENST00000566354 MYH6P13533 1939 aa14.92□□□□□ -0.02
VPS4A-204ENST00000566354 CYP2D7A0A087X1C5 515 aa14.92□□□□□ -0.02
VPS4A-204ENST00000566354 PPP1R3GB7ZBB8 358 aa14.92□□□□□ -0.02
VPS4A-204ENST00000566354 POTEB2H3BUK9 544 aa14.92□□□□□ -0.02
VPS4A-204ENST00000566354 RAD17O75943 681 aa14.92□□□□□ -0.02
VPS4A-204ENST00000566354 BAG3O95817 575 aa14.92□□□□□ -0.02
VPS4A-204ENST00000566354 FECHP22830 423 aa14.92□□□□□ -0.02
VPS4A-204ENST00000566354 STX17P56962 302 aa14.92□□□□□ -0.02
VPS4A-204ENST00000566354 PPP4CP60510 307 aa14.92□□□□□ -0.02
VPS4A-204ENST00000566354 EVX2Q03828 476 aa14.92□□□□□ -0.02
VPS4A-204ENST00000566354 TXLNBQ8N3L3 684 aa14.92□□□□□ -0.02
VPS4A-204ENST00000566354 HNRNPLLQ8WVV9 542 aaKnown RBP14.92□□□□□ -0.02
VPS4A-204ENST00000566354 FAM163AQ96GL9 167 aaPredicted RBP14.92□□□□□ -0.02
VPS4A-204ENST00000566354 BRMS1Q9HCU9 246 aa14.92□□□□□ -0.02
VPS4A-204ENST00000566354 DCP1AQ9NPI6 582 aaPredicted RBP14.92□□□□□ -0.02
VPS4A-204ENST00000566354 FAM205CA6NFA0 338 aa14.91□□□□□ -0.02
VPS4A-204ENST00000566354 MINDY4BA8MYZ0 360 aa14.91□□□□□ -0.02
VPS4A-204ENST00000566354 RASSF7Q02833 373 aa14.91□□□□□ -0.02
VPS4A-204ENST00000566354 FUT2Q10981 343 aa14.91□□□□□ -0.02
VPS4A-204ENST00000566354 LONRF2Q1L5Z9 754 aa14.91□□□□□ -0.02
VPS4A-204ENST00000566354 SHISA4Q96DD7 197 aa14.91□□□□□ -0.02
VPS4A-204ENST00000566354 CDK5RAP2Q96SN8 1893 aa14.91□□□□□ -0.02
VPS4A-204ENST00000566354 PSME4Q14997 1843 aa14.91□□□□□ -0.02
VPS4A-204ENST00000566354 ARFGEF1Q9Y6D6 1849 aa14.91□□□□□ -0.02
VPS4A-204ENST00000566354 LRRC10BA6NIK2 292 aa14.91□□□□□ -0.02
VPS4A-204ENST00000566354 CASP14P31944 242 aa14.91□□□□□ -0.02
VPS4A-204ENST00000566354 CATIPQ7Z7H3 387 aa14.91□□□□□ -0.02
VPS4A-204ENST00000566354 TMTC1Q8IUR5 882 aa14.91□□□□□ -0.02
VPS4A-204ENST00000566354 SLF2Q8IX21 1173 aa14.91□□□□□ -0.02
VPS4A-204ENST00000566354 ZSCAN10Q96SZ4 725 aaPredicted RBP14.91□□□□□ -0.02
VPS4A-204ENST00000566354 RBM28Q9NW13 759 aaKnown RBP14.91□□□□□ -0.02
VPS4A-204ENST00000566354 MAP2K7O14733 419 aa14.9□□□□□ -0.02
VPS4A-204ENST00000566354 RHBDL3P58872 404 aa14.9□□□□□ -0.02
VPS4A-204ENST00000566354 EARS2Q5JPH6 523 aaKnown RBP14.9□□□□□ -0.02
VPS4A-204ENST00000566354 ZNF569Q5MCW4 686 aa14.9□□□□□ -0.02
VPS4A-204ENST00000566354 ENAHQ8N8S7 591 aaPredicted RBP14.9□□□□□ -0.02
VPS4A-204ENST00000566354 TGFBRAP1Q8WUH2 860 aa14.9□□□□□ -0.02
VPS4A-204ENST00000566354 PYM1Q9BRP8 204 aaKnown RBP14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms