RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 MCM6Q14566 821 aa15.18■□□□□ 0.02
CLK3-215ENST00000564353 ZNF658Q5TYW1 1059 aaPredicted RBP15.18■□□□□ 0.02
CLK3-215ENST00000564353 CTAGE1Q96RT6 745 aa15.18■□□□□ 0.02
CLK3-215ENST00000564353 RTCBQ9Y3I0 505 aaKnown RBP15.18■□□□□ 0.02
CLK3-215ENST00000564353 SRGAP2O75044 1071 aa15.17■□□□□ 0.02
CLK3-215ENST00000564353 BMP15O95972 392 aa15.17■□□□□ 0.02
CLK3-215ENST00000564353 TXNRD1Q16881 649 aa15.17■□□□□ 0.02
CLK3-215ENST00000564353 RWDD2AQ9UIY3 292 aa15.17■□□□□ 0.02
CLK3-215ENST00000564353 PLCG1P19174 1290 aa15.17■□□□□ 0.02
CLK3-215ENST00000564353 PNKPQ96T60 521 aa15.17■□□□□ 0.02
CLK3-215ENST00000564353 ANKRD2Q9GZV1 360 aa15.17■□□□□ 0.02
CLK3-215ENST00000564353 AGPAT5Q9NUQ2 364 aa15.17■□□□□ 0.02
CLK3-215ENST00000564353 UTRNP46939 3433 aa15.16■□□□□ 0.02
CLK3-215ENST00000564353 GOLGA6L9A6NEM1 432 aa15.16■□□□□ 0.02
CLK3-215ENST00000564353 RFC4P35249 363 aa15.16■□□□□ 0.02
CLK3-215ENST00000564353 BTDP43251 543 aa15.16■□□□□ 0.02
CLK3-215ENST00000564353 ST5P78524 1137 aa15.16■□□□□ 0.02
CLK3-215ENST00000564353 GABPB1Q06547 395 aaPredicted RBP15.16■□□□□ 0.02
CLK3-215ENST00000564353 CNGA4Q8IV77 575 aa15.16■□□□□ 0.02
CLK3-215ENST00000564353 NEK11Q8NG66 645 aa15.16■□□□□ 0.02
CLK3-215ENST00000564353 GOLGA1Q92805 767 aa15.16■□□□□ 0.02
CLK3-215ENST00000564353 CAPZA3Q96KX2 299 aa15.16■□□□□ 0.02
CLK3-215ENST00000564353 FAM53CQ9NYF3 392 aa15.16■□□□□ 0.02
CLK3-215ENST00000564353 STXBP3O00186 592 aa15.16■□□□□ 0.02
CLK3-215ENST00000564353 GDAP1L1Q96MZ0 367 aa15.16■□□□□ 0.02
CLK3-215ENST00000564353 PIGSQ96S52 555 aa15.16■□□□□ 0.02
CLK3-215ENST00000564353 NYXQ9GZU5 481 aa15.16■□□□□ 0.02
CLK3-215ENST00000564353 TUBB4AP04350 444 aa15.16■□□□□ 0.02
CLK3-215ENST00000564353 RASA1P20936 1047 aa15.16■□□□□ 0.02
CLK3-215ENST00000564353 CALML3P27482 149 aa15.16■□□□□ 0.02
CLK3-215ENST00000564353 TXKP42681 527 aa15.16■□□□□ 0.02
CLK3-215ENST00000564353 STK4Q13043 487 aa15.16■□□□□ 0.02
CLK3-215ENST00000564353 SLC10A5Q5PT55 438 aa15.16■□□□□ 0.02
CLK3-215ENST00000564353 RSRC2Q7L4I2 434 aaKnown RBP15.16■□□□□ 0.02
CLK3-215ENST00000564353 LRRC47Q8N1G4 583 aaKnown RBP15.16■□□□□ 0.02
CLK3-215ENST00000564353 EYA3Q99504 573 aa15.16■□□□□ 0.02
CLK3-215ENST00000564353 SMCO2A6NFE2 343 aa15.15■□□□□ 0.02
CLK3-215ENST00000564353 UFL1O94874 794 aa15.15■□□□□ 0.02
CLK3-215ENST00000564353 OAS2P29728 719 aaKnown RBP15.15■□□□□ 0.02
CLK3-215ENST00000564353 ASIC1P78348 528 aa15.15■□□□□ 0.02
CLK3-215ENST00000564353 ATP2B2Q01814 1243 aa15.15■□□□□ 0.02
CLK3-215ENST00000564353 DYMQ7RTS9 669 aa15.15■□□□□ 0.02
CLK3-215ENST00000564353 ANKRD20A12PQ8NF67 263 aa15.15■□□□□ 0.02
CLK3-215ENST00000564353 COA7Q96BR5 231 aa15.15■□□□□ 0.02
CLK3-215ENST00000564353 SLC39A2Q9NP94 309 aa15.15■□□□□ 0.02
CLK3-215ENST00000564353 LIMA1Q9UHB6 759 aaKnown RBP15.15■□□□□ 0.02
CLK3-215ENST00000564353 MKRN1Q9UHC7 482 aaKnown RBP15.15■□□□□ 0.02
CLK3-215ENST00000564353 KCNG1Q9UIX4 513 aa15.15■□□□□ 0.02
CLK3-215ENST00000564353 USP21Q9UK80 565 aa15.15■□□□□ 0.02
CLK3-215ENST00000564353 DUSP10Q9Y6W6 482 aa15.15■□□□□ 0.02
CLK3-215ENST00000564353 WNK3Q9BYP7 1800 aa15.15■□□□□ 0.02
CLK3-215ENST00000564353 CTAGE9A4FU28 777 aa15.15■□□□□ 0.02
CLK3-215ENST00000564353 RIMBP2O15034 1052 aa15.15■□□□□ 0.02
CLK3-215ENST00000564353 LONP1P36776 959 aaKnown RBP15.15■□□□□ 0.02
CLK3-215ENST00000564353 GPSM2P81274 684 aa15.15■□□□□ 0.02
CLK3-215ENST00000564353 CYP27A1Q02318 531 aa15.15■□□□□ 0.02
CLK3-215ENST00000564353 VPS72Q15906 364 aa15.15■□□□□ 0.02
CLK3-215ENST00000564353 NOA1Q8NC60 698 aaKnown RBP15.15■□□□□ 0.02
CLK3-215ENST00000564353 ARFGAP3Q9NP61 516 aa15.15■□□□□ 0.02
CLK3-215ENST00000564353 REXO2Q9Y3B8 237 aaKnown RBP15.15■□□□□ 0.02
CLK3-215ENST00000564353 USP17L5A8MUK1 530 aa15.14■□□□□ 0.01
CLK3-215ENST00000564353 SEMA3EO15041 775 aa15.14■□□□□ 0.01
CLK3-215ENST00000564353 RPS6KA4O75676 772 aa15.14■□□□□ 0.01
CLK3-215ENST00000564353 ZMYND10O75800 440 aa15.14■□□□□ 0.01
CLK3-215ENST00000564353 MRPS25P82663 173 aaKnown RBP15.14■□□□□ 0.01
CLK3-215ENST00000564353 PDE4DQ08499 809 aa15.14■□□□□ 0.01
CLK3-215ENST00000564353 GRM4Q14833 912 aa15.14■□□□□ 0.01
CLK3-215ENST00000564353 SBK1Q52WX2 424 aa15.14■□□□□ 0.01
CLK3-215ENST00000564353 FAM196AQ6ZSG2 479 aa15.14■□□□□ 0.01
CLK3-215ENST00000564353 TEX11Q8IYF3 940 aa15.14■□□□□ 0.01
CLK3-215ENST00000564353 CNPY4Q8N129 248 aa15.14■□□□□ 0.01
CLK3-215ENST00000564353 ADSSL1Q8N142 457 aa15.14■□□□□ 0.01
CLK3-215ENST00000564353 GPR161Q8N6U8 529 aaKnown RBP15.14■□□□□ 0.01
CLK3-215ENST00000564353 CEP95Q96GE4 821 aa15.14■□□□□ 0.01
CLK3-215ENST00000564353 MXD3Q9BW11 206 aa15.14■□□□□ 0.01
CLK3-215ENST00000564353 PHACTR2O75167 634 aa15.14■□□□□ 0.01
CLK3-215ENST00000564353 ARHGAP25P42331 645 aa15.14■□□□□ 0.01
CLK3-215ENST00000564353 CDK8P49336 464 aa15.14■□□□□ 0.01
CLK3-215ENST00000564353 CABP7Q86V35 215 aa15.14■□□□□ 0.01
CLK3-215ENST00000564353 DGKHQ86XP1 1220 aa15.14■□□□□ 0.01
CLK3-215ENST00000564353 POTEDQ86YR6 584 aa15.14■□□□□ 0.01
CLK3-215ENST00000564353 CSGALNACT2Q8N6G5 542 aa15.14■□□□□ 0.01
CLK3-215ENST00000564353 ANKZF1Q9H8Y5 726 aa15.14■□□□□ 0.01
CLK3-215ENST00000564353 KLRC4O43908 158 aa15.13■□□□□ 0.01
CLK3-215ENST00000564353 PCP11498 1178 aaKnown RBP15.13■□□□□ 0.01
CLK3-215ENST00000564353 TRAPPC10P48553 1259 aa15.13■□□□□ 0.01
CLK3-215ENST00000564353 LONRF2Q1L5Z9 754 aa15.13■□□□□ 0.01
CLK3-215ENST00000564353 SRGAP1Q7Z6B7 1085 aa15.13■□□□□ 0.01
CLK3-215ENST00000564353 AMOTL1Q8IY63 956 aa15.13■□□□□ 0.01
CLK3-215ENST00000564353 DRC1Q96MC2 740 aa15.13■□□□□ 0.01
CLK3-215ENST00000564353 GPCPD1Q9NPB8 672 aa15.13■□□□□ 0.01
CLK3-215ENST00000564353 BARHL2Q9NY43 387 aa15.13■□□□□ 0.01
CLK3-215ENST00000564353 N4BP1O75113 896 aaKnown RBP15.13■□□□□ 0.01
CLK3-215ENST00000564353 BAG3O95817 575 aa15.13■□□□□ 0.01
CLK3-215ENST00000564353 SMC1AQ14683 1233 aaKnown RBP15.13■□□□□ 0.01
CLK3-215ENST00000564353 ANKRD40Q6AI12 368 aa15.13■□□□□ 0.01
CLK3-215ENST00000564353 CYP26C1Q6V0L0 522 aa15.13■□□□□ 0.01
CLK3-215ENST00000564353 MB21D1Q8N884 522 aa15.13■□□□□ 0.01
CLK3-215ENST00000564353 CNBD1Q8NA66 436 aa15.13■□□□□ 0.01
CLK3-215ENST00000564353 TBCKQ8TEA7 893 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms