RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 GOLIM4O00461 696 aa12.53□□□□□ -0.4
SF3B3-204ENST00000563739 ATP2A1O14983 1001 aa12.53□□□□□ -0.4
SF3B3-204ENST00000563739 BEX3Q00994 111 aa12.53□□□□□ -0.4
SF3B3-204ENST00000563739 ACVR2BQ13705 512 aa12.53□□□□□ -0.4
SF3B3-204ENST00000563739 CCDC144BQ3MJ40 725 aa12.53□□□□□ -0.4
SF3B3-204ENST00000563739 SNRNP48Q6IEG0 339 aaKnown RBP12.53□□□□□ -0.4
SF3B3-204ENST00000563739 CCDC129Q6ZRS4 1044 aa12.53□□□□□ -0.4
SF3B3-204ENST00000563739 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.53□□□□□ -0.4
SF3B3-204ENST00000563739 NUP133Q8WUM0 1156 aa12.53□□□□□ -0.4
SF3B3-204ENST00000563739 NOC4LQ9BVI4 516 aaKnown RBP12.53□□□□□ -0.4
SF3B3-204ENST00000563739 TEX13BQ9BXU2 312 aa12.53□□□□□ -0.4
SF3B3-204ENST00000563739 EPHX3Q9H6B9 360 aa12.53□□□□□ -0.4
SF3B3-204ENST00000563739 GNEQ9Y223 722 aaKnown RBP12.53□□□□□ -0.4
SF3B3-204ENST00000563739 CNPY2Q9Y2B0 182 aa12.53□□□□□ -0.4
SF3B3-204ENST00000563739 USP17L12C9JPN9 530 aa12.52□□□□□ -0.41
SF3B3-204ENST00000563739 USP17L21D6R901 530 aa12.52□□□□□ -0.41
SF3B3-204ENST00000563739 RFXAPO00287 272 aa12.52□□□□□ -0.41
SF3B3-204ENST00000563739 IPO8O15397 1037 aaKnown RBP12.52□□□□□ -0.41
SF3B3-204ENST00000563739 NDUFB10O96000 172 aa12.52□□□□□ -0.41
SF3B3-204ENST00000563739 C6orf222P0C671 652 aaPredicted RBP12.52□□□□□ -0.41
SF3B3-204ENST00000563739 RASA1P20936 1047 aa12.52□□□□□ -0.41
SF3B3-204ENST00000563739 RAB30Q15771 203 aa12.52□□□□□ -0.41
SF3B3-204ENST00000563739 KRT40Q6A162 431 aa12.52□□□□□ -0.41
SF3B3-204ENST00000563739 CTR9Q6PD62 1173 aa12.52□□□□□ -0.41
SF3B3-204ENST00000563739 ARMCX2Q7L311 632 aa12.52□□□□□ -0.41
SF3B3-204ENST00000563739 CCDC17Q96LX7 622 aa12.52□□□□□ -0.41
SF3B3-204ENST00000563739 AGBL1Q96MI9 1066 aa12.52□□□□□ -0.41
SF3B3-204ENST00000563739 GLT1D1Q96MS3 346 aa12.52□□□□□ -0.41
SF3B3-204ENST00000563739 SH2D4AQ9H788 454 aa12.52□□□□□ -0.41
SF3B3-204ENST00000563739 MROH7Q68CQ1 1323 aa12.52□□□□□ -0.41
SF3B3-204ENST00000563739 IGFBP4P22692 258 aa12.51□□□□□ -0.41
SF3B3-204ENST00000563739 COPB2P35606 906 aa12.51□□□□□ -0.41
SF3B3-204ENST00000563739 CNTN2Q02246 1040 aa12.51□□□□□ -0.41
SF3B3-204ENST00000563739 ZKSCAN2Q63HK3 967 aa12.51□□□□□ -0.41
SF3B3-204ENST00000563739 SIRT2Q8IXJ6 389 aa12.51□□□□□ -0.41
SF3B3-204ENST00000563739 TMEM199Q8N511 208 aa12.51□□□□□ -0.41
SF3B3-204ENST00000563739 RHPN1Q8TCX5 695 aa12.51□□□□□ -0.41
SF3B3-204ENST00000563739 SLF1Q9BQI6 1058 aa12.51□□□□□ -0.41
SF3B3-204ENST00000563739 LRFN3Q9BTN0 628 aa12.51□□□□□ -0.41
SF3B3-204ENST00000563739 RNF39Q9H2S5 420 aa12.51□□□□□ -0.41
SF3B3-204ENST00000563739 ATP8A2Q9NTI2 1148 aa12.51□□□□□ -0.41
SF3B3-204ENST00000563739 MTCH2Q9Y6C9 303 aa12.51□□□□□ -0.41
SF3B3-204ENST00000563739 SOWAHBA6NEL2 793 aa12.5□□□□□ -0.41
SF3B3-204ENST00000563739 B4GALT4O60513 344 aa12.5□□□□□ -0.41
SF3B3-204ENST00000563739 POU3F3P20264 500 aaPredicted RBP12.5□□□□□ -0.41
SF3B3-204ENST00000563739 CCL23P55773 120 aa12.5□□□□□ -0.41
SF3B3-204ENST00000563739 CXCL17Q6UXB2 119 aa12.5□□□□□ -0.41
SF3B3-204ENST00000563739 OTOP2Q7RTS6 562 aa12.5□□□□□ -0.41
SF3B3-204ENST00000563739 CCDC144CPQ8IYA2 1237 aa12.5□□□□□ -0.41
SF3B3-204ENST00000563739 FAM133AQ8N9E0 248 aa12.5□□□□□ -0.41
SF3B3-204ENST00000563739 SCLYQ96I15 445 aa12.5□□□□□ -0.41
SF3B3-204ENST00000563739 DNAJC2Q99543 621 aaKnown RBP12.5□□□□□ -0.41
SF3B3-204ENST00000563739 TRPV6Q9H1D0 765 aa12.5□□□□□ -0.41
SF3B3-204ENST00000563739 KANSL2Q9H9L4 492 aa12.5□□□□□ -0.41
SF3B3-204ENST00000563739 SLC38A10Q9HBR0 1119 aa12.5□□□□□ -0.41
SF3B3-204ENST00000563739 RAVER2Q9HCJ3 691 aaKnown RBP12.5□□□□□ -0.41
SF3B3-204ENST00000563739 CD320Q9NPF0 282 aa12.5□□□□□ -0.41
SF3B3-204ENST00000563739 ZNF536O15090 1300 aa12.5□□□□□ -0.41
SF3B3-204ENST00000563739 ATG2AQ2TAZ0 1938 aa12.5□□□□□ -0.41
SF3B3-204ENST00000563739 ERC2O15083 957 aa12.49□□□□□ -0.41
SF3B3-204ENST00000563739 TLL1O43897 1013 aa12.49□□□□□ -0.41
SF3B3-204ENST00000563739 TTLL4Q14679 1199 aa12.49□□□□□ -0.41
SF3B3-204ENST00000563739 TTF1Q15361 905 aaPredicted RBP12.49□□□□□ -0.41
SF3B3-204ENST00000563739 GNASQ5JWF2 1037 aa12.49□□□□□ -0.41
SF3B3-204ENST00000563739 RASGRP2Q7LDG7 609 aa12.49□□□□□ -0.41
SF3B3-204ENST00000563739 PCSK9Q8NBP7 692 aaKnown RBP12.49□□□□□ -0.41
SF3B3-204ENST00000563739 PUS7LQ9H0K6 701 aaKnown RBP12.49□□□□□ -0.41
SF3B3-204ENST00000563739 ABHD16BQ9H3Z7 469 aa12.49□□□□□ -0.41
SF3B3-204ENST00000563739 HIPK3Q9H422 1215 aa12.49□□□□□ -0.41
SF3B3-204ENST00000563739 EPB41L4AQ9HCS5 686 aaPredicted RBP12.49□□□□□ -0.41
SF3B3-204ENST00000563739 MSRAQ9UJ68 235 aa12.49□□□□□ -0.41
SF3B3-204ENST00000563739 WDFY4Q6ZS81 3184 aa12.49□□□□□ -0.41
SF3B3-204ENST00000563739 PLIN4Q96Q06 1357 aa12.48□□□□□ -0.41
SF3B3-204ENST00000563739 F5H6K3 240 aa12.48□□□□□ -0.41
SF3B3-204ENST00000563739 LPXNO60711 386 aa12.48□□□□□ -0.41
SF3B3-204ENST00000563739 FGBP02675 491 aa12.48□□□□□ -0.41
SF3B3-204ENST00000563739 SMPD1P17405 629 aa12.48□□□□□ -0.41
SF3B3-204ENST00000563739 PSMC6P62333 389 aa12.48□□□□□ -0.41
SF3B3-204ENST00000563739 KLRC3Q07444 240 aa12.48□□□□□ -0.41
SF3B3-204ENST00000563739 SLC28A3Q9HAS3 691 aa12.48□□□□□ -0.41
SF3B3-204ENST00000563739 GOPCQ9HD26 462 aa12.48□□□□□ -0.41
SF3B3-204ENST00000563739 A1CFQ9NQ94 594 aaKnown RBP12.48□□□□□ -0.41
SF3B3-204ENST00000563739 PDGFCQ9NRA1 345 aa12.48□□□□□ -0.41
SF3B3-204ENST00000563739 PAG1Q9NWQ8 432 aa12.48□□□□□ -0.41
SF3B3-204ENST00000563739 NYAP2Q9P242 653 aa12.48□□□□□ -0.41
SF3B3-204ENST00000563739 PCDHA11Q9Y5I1 949 aa12.48□□□□□ -0.41
SF3B3-204ENST00000563739 SIP14410 1827 aa12.47□□□□□ -0.41
SF3B3-204ENST00000563739 CA3P07451 260 aa12.47□□□□□ -0.41
SF3B3-204ENST00000563739 ITGA7Q13683 1181 aa12.47□□□□□ -0.41
SF3B3-204ENST00000563739 PPP2R2DQ66LE6 453 aa12.47□□□□□ -0.41
SF3B3-204ENST00000563739 TAPT1Q6NXT6 567 aa12.47□□□□□ -0.41
SF3B3-204ENST00000563739 TLK2Q86UE8 772 aa12.47□□□□□ -0.41
SF3B3-204ENST00000563739 ITPRIPQ8IWB1 547 aa12.47□□□□□ -0.41
SF3B3-204ENST00000563739 CPXCR1Q8N123 301 aa12.47□□□□□ -0.41
SF3B3-204ENST00000563739 MICALL1Q8N3F8 863 aa12.47□□□□□ -0.41
SF3B3-204ENST00000563739 DDX11Q96FC9 970 aa12.47□□□□□ -0.41
SF3B3-204ENST00000563739 GSG1L2A8MUP6 293 aa12.46□□□□□ -0.41
SF3B3-204ENST00000563739 APBB1O00213 710 aa12.46□□□□□ -0.41
SF3B3-204ENST00000563739 TLR3O15455 904 aaKnown RBP12.46□□□□□ -0.41
SF3B3-204ENST00000563739 UBE3CQ15386 1083 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms