RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 CCDC51Q96ER9 411 aa12.7□□□□□ -0.38
CUX1-218ENST00000560541 TFCP2L1Q9NZI6 479 aa12.7□□□□□ -0.38
CUX1-218ENST00000560541 TAF1P21675 1872 aa12.7□□□□□ -0.38
CUX1-218ENST00000560541 DUOX1Q9NRD9 1551 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 TSPY2A6NKD2 308 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 ITPK1Q13572 414 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 ERFEQ4G0M1 354 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 CAVIN4Q5BKX8 364 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 ZNF658Q5TYW1 1059 aaPredicted RBP12.69□□□□□ -0.38
CUX1-218ENST00000560541 ANKRD18AQ8IVF6 992 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 REXO2Q9Y3B8 237 aaKnown RBP12.69□□□□□ -0.38
CUX1-218ENST00000560541 ZNF804BA4D1E1 1349 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 SRGAP2O75044 1071 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 DDAH1O94760 285 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 PARP1P09874 1014 aaKnown RBP12.69□□□□□ -0.38
CUX1-218ENST00000560541 CALM1P0DP23 149 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 CALM2P0DP24 149 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 CALM3P0DP25 149 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 KCNQ4P56696 695 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 HDXQ7Z353 690 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 CCDC24Q8N4L8 307 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 CCDC102AQ96A19 550 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 FAM84BQ96KN1 310 aaPredicted RBP12.69□□□□□ -0.38
CUX1-218ENST00000560541 BRIP1Q9BX63 1249 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 PRDX5P30044 214 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 MECOMQ03112 1051 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 PARP10Q53GL7 1025 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 IRF2BP1Q8IU81 584 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 MSANTD4Q8NCY6 345 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 CAPZA3Q96KX2 299 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 GDAP1L1Q96MZ0 367 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 MYO6Q9UM54 1294 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 FAN1Q9Y2M0 1017 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 EPN1Q9Y6I3 576 aaPredicted RBP12.69□□□□□ -0.38
CUX1-218ENST00000560541 PLCH1Q4KWH8 1693 aa12.69□□□□□ -0.38
CUX1-218ENST00000560541 XIRP1Q702N8 1843 aaKnown RBP12.68□□□□□ -0.38
CUX1-218ENST00000560541 LRRC10BA6NIK2 292 aa12.68□□□□□ -0.38
CUX1-218ENST00000560541 NDUFA10O95299 355 aa12.68□□□□□ -0.38
CUX1-218ENST00000560541 SWT1Q5T5J6 900 aaKnown RBP12.68□□□□□ -0.38
CUX1-218ENST00000560541 GPIHBP1Q8IV16 184 aa12.68□□□□□ -0.38
CUX1-218ENST00000560541 STAG2Q8N3U4 1231 aa12.68□□□□□ -0.38
CUX1-218ENST00000560541 CELF1Q92879 486 aaKnown RBP12.68□□□□□ -0.38
CUX1-218ENST00000560541 DCP1AQ9NPI6 582 aaPredicted RBP12.68□□□□□ -0.38
CUX1-218ENST00000560541 RAB21Q9UL25 225 aa12.68□□□□□ -0.38
CUX1-218ENST00000560541 LOC102724428A0A0B4J2F2 783 aa12.68□□□□□ -0.38
CUX1-218ENST00000560541 ERLIN1O75477 346 aa12.68□□□□□ -0.38
CUX1-218ENST00000560541 SSR1P43307 286 aaKnown RBP12.68□□□□□ -0.38
CUX1-218ENST00000560541 SIK1P57059 783 aa12.68□□□□□ -0.38
CUX1-218ENST00000560541 SPAG1Q07617 926 aa12.68□□□□□ -0.38
CUX1-218ENST00000560541 PFKFB3Q16875 520 aaPredicted RBP12.68□□□□□ -0.38
CUX1-218ENST00000560541 TYW1BQ6NUM6 668 aa12.68□□□□□ -0.38
CUX1-218ENST00000560541 HINFPQ9BQA5 517 aa12.68□□□□□ -0.38
CUX1-218ENST00000560541 L1RE1Q9UN81 338 aa12.68□□□□□ -0.38
CUX1-218ENST00000560541 ABCA3Q99758 1704 aa12.68□□□□□ -0.38
CUX1-218ENST00000560541 BCL9LQ86UU0 1499 aa12.68□□□□□ -0.38
CUX1-218ENST00000560541 MYH13Q9UKX3 1938 aa12.67□□□□□ -0.38
CUX1-218ENST00000560541 ZMYND10O75800 440 aa12.67□□□□□ -0.38
CUX1-218ENST00000560541 KLK7P49862 253 aa12.67□□□□□ -0.38
CUX1-218ENST00000560541 CASP8Q14790 479 aa12.67□□□□□ -0.38
CUX1-218ENST00000560541 TRIM47Q96LD4 638 aa12.67□□□□□ -0.38
CUX1-218ENST00000560541 TMEM60Q9H2L4 133 aa12.67□□□□□ -0.38
CUX1-218ENST00000560541 MINPP1Q9UNW1 487 aa12.67□□□□□ -0.38
CUX1-218ENST00000560541 NHSL1Q5SYE7 1610 aa12.67□□□□□ -0.38
CUX1-218ENST00000560541 FECHP22830 423 aa12.67□□□□□ -0.38
CUX1-218ENST00000560541 PAX7P23759 505 aa12.67□□□□□ -0.38
CUX1-218ENST00000560541 SUGP1Q8IWZ8 645 aaKnown RBP12.67□□□□□ -0.38
CUX1-218ENST00000560541 NSUN4Q96CB9 384 aaKnown RBP12.67□□□□□ -0.38
CUX1-218ENST00000560541 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.67□□□□□ -0.38
CUX1-218ENST00000560541 B4DLN1 442 aa12.67□□□□□ -0.38
CUX1-218ENST00000560541 ATP1A1P05023 1023 aaKnown RBP12.67□□□□□ -0.38
CUX1-218ENST00000560541 USP17L8P0C7I0 530 aa12.67□□□□□ -0.38
CUX1-218ENST00000560541 USP5P45974 858 aa12.67□□□□□ -0.38
CUX1-218ENST00000560541 PIP4K2BP78356 416 aa12.67□□□□□ -0.38
CUX1-218ENST00000560541 WHAMMP3Q1A5X7 153 aa12.67□□□□□ -0.38
CUX1-218ENST00000560541 INF2Q27J81 1249 aa12.67□□□□□ -0.38
CUX1-218ENST00000560541 NAALADL2Q58DX5 795 aa12.67□□□□□ -0.38
CUX1-218ENST00000560541 CCDC122Q5T0U0 273 aa12.67□□□□□ -0.38
CUX1-218ENST00000560541 BLIDQ8IZY5 108 aa12.67□□□□□ -0.38
CUX1-218ENST00000560541 HNRNPLLQ8WVV9 542 aaKnown RBP12.67□□□□□ -0.38
CUX1-218ENST00000560541 DISC1Q9NRI5 854 aa12.67□□□□□ -0.38
CUX1-218ENST00000560541 RMND1Q9NWS8 449 aa12.67□□□□□ -0.38
CUX1-218ENST00000560541 MCM9Q9NXL9 1143 aa12.67□□□□□ -0.38
CUX1-218ENST00000560541 LUC7L2Q9Y383 392 aaKnown RBP12.67□□□□□ -0.38
CUX1-218ENST00000560541 CACNA1SQ13698 1873 aa12.66□□□□□ -0.38
CUX1-218ENST00000560541 LRRIQ3A6PVS8 624 aaPredicted RBP12.66□□□□□ -0.38
CUX1-218ENST00000560541 POTEB2H3BUK9 544 aa12.66□□□□□ -0.38
CUX1-218ENST00000560541 AMPD2Q01433 879 aa12.66□□□□□ -0.38
CUX1-218ENST00000560541 MB21D1Q8N884 522 aa12.66□□□□□ -0.38
CUX1-218ENST00000560541 CPVLQ9H3G5 476 aa12.66□□□□□ -0.38
CUX1-218ENST00000560541 AGPAT5Q9NUQ2 364 aa12.66□□□□□ -0.38
CUX1-218ENST00000560541 RCSD1Q6JBY9 416 aa12.66□□□□□ -0.38
CUX1-218ENST00000560541 ADSSL1Q8N142 457 aa12.66□□□□□ -0.38
CUX1-218ENST00000560541 C4orf32Q8N8J7 132 aa12.66□□□□□ -0.38
CUX1-218ENST00000560541 OR8K1Q8NGG5 319 aa12.66□□□□□ -0.38
CUX1-218ENST00000560541 GIMAP7Q8NHV1 300 aa12.66□□□□□ -0.38
CUX1-218ENST00000560541 LRRC15Q8TF66 581 aa12.66□□□□□ -0.38
CUX1-218ENST00000560541 EXOC4Q96A65 974 aa12.66□□□□□ -0.38
CUX1-218ENST00000560541 DYNLL2Q96FJ2 89 aa12.66□□□□□ -0.38
CUX1-218ENST00000560541 IRAK4Q9NWZ3 460 aa12.66□□□□□ -0.38
CUX1-218ENST00000560541 CCDC194A0A1B0GVG4 234 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms