RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 SAMD1Q6SPF0 538 aaPredicted RBP12.02□□□□□ -0.49
CUX1-217ENST00000558836 PPP1R13BQ96KQ4 1090 aa12.02□□□□□ -0.49
CUX1-217ENST00000558836 DDTLA6NHG4 134 aaPredicted RBP12.01□□□□□ -0.49
CUX1-217ENST00000558836 LONP1P36776 959 aaKnown RBP12.01□□□□□ -0.49
CUX1-217ENST00000558836 AOC3Q16853 763 aa12.01□□□□□ -0.49
CUX1-217ENST00000558836 ARL6IP4Q66PJ3 421 aaKnown RBP12.01□□□□□ -0.49
CUX1-217ENST00000558836 NYAP1Q6ZVC0 841 aa12.01□□□□□ -0.49
CUX1-217ENST00000558836 TMC4Q7Z404 712 aa12.01□□□□□ -0.49
CUX1-217ENST00000558836 TMX1Q9H3N1 280 aa12.01□□□□□ -0.49
CUX1-217ENST00000558836 C6orf50Q9HD87 102 aa12.01□□□□□ -0.49
CUX1-217ENST00000558836 DISC1Q9NRI5 854 aa12.01□□□□□ -0.49
CUX1-217ENST00000558836 TRIM49BA6NDI0 452 aa12.01□□□□□ -0.49
CUX1-217ENST00000558836 TXLNAP40222 546 aa12.01□□□□□ -0.49
CUX1-217ENST00000558836 TXKP42681 527 aa12.01□□□□□ -0.49
CUX1-217ENST00000558836 UBE2SQ16763 222 aa12.01□□□□□ -0.49
CUX1-217ENST00000558836 CCDC96Q2M329 555 aa12.01□□□□□ -0.49
CUX1-217ENST00000558836 POTEDQ86YR6 584 aa12.01□□□□□ -0.49
CUX1-217ENST00000558836 LZTS2Q9BRK4 669 aa12.01□□□□□ -0.49
CUX1-217ENST00000558836 DNAJC18Q9H819 358 aa12.01□□□□□ -0.49
CUX1-217ENST00000558836 RPN1P04843 607 aaKnown RBP12□□□□□ -0.49
CUX1-217ENST00000558836 ERCC5P28715 1186 aaPredicted RBP12□□□□□ -0.49
CUX1-217ENST00000558836 SNAP25P60880 206 aa12□□□□□ -0.49
CUX1-217ENST00000558836 NONOQ15233 471 aaKnown RBP eCLIP12□□□□□ -0.491e-6■■■□□ 16.9
CUX1-217ENST00000558836 SPATA1Q5VX52 437 aa12□□□□□ -0.49
CUX1-217ENST00000558836 REXO1Q8N1G1 1221 aaKnown RBP12□□□□□ -0.49
CUX1-217ENST00000558836 CCDC112Q8NEF3 446 aa12□□□□□ -0.49
CUX1-217ENST00000558836 USP17L10C9JJH3 530 aa12□□□□□ -0.49
CUX1-217ENST00000558836 H0YIN7 160 aa12□□□□□ -0.49
CUX1-217ENST00000558836 ECE2O60344 883 aa12□□□□□ -0.49
CUX1-217ENST00000558836 TTLL1O95922 423 aa12□□□□□ -0.49
CUX1-217ENST00000558836 GNA11P29992 359 aa12□□□□□ -0.49
CUX1-217ENST00000558836 SPECC1LQ69YQ0 1117 aa12□□□□□ -0.49
CUX1-217ENST00000558836 SYT10Q6XYQ8 523 aa12□□□□□ -0.49
CUX1-217ENST00000558836 ADGRF4Q8IZF3 695 aa12□□□□□ -0.49
CUX1-217ENST00000558836 LTBP1Q14766 1721 aa12□□□□□ -0.49
CUX1-217ENST00000558836 GTPBP6O43824 516 aaPredicted RBP12□□□□□ -0.49
CUX1-217ENST00000558836 PPP1R11O60927 126 aaPredicted RBP12□□□□□ -0.49
CUX1-217ENST00000558836 TDP2O95551 362 aa12□□□□□ -0.49
CUX1-217ENST00000558836 PRCPP42785 496 aa12□□□□□ -0.49
CUX1-217ENST00000558836 NR1I3Q14994 352 aa12□□□□□ -0.49
CUX1-217ENST00000558836 APTXQ7Z2E3 356 aaKnown RBP12□□□□□ -0.49
CUX1-217ENST00000558836 NEK8Q86SG6 692 aa12□□□□□ -0.49
CUX1-217ENST00000558836 DAGLBQ8NCG7 672 aa12□□□□□ -0.49
CUX1-217ENST00000558836 HPS3Q969F9 1004 aa12□□□□□ -0.49
CUX1-217ENST00000558836 VPS16Q9H269 839 aa12□□□□□ -0.49
CUX1-217ENST00000558836 RIOX1Q9H6W3 641 aa12□□□□□ -0.49
CUX1-217ENST00000558836 JMJD4Q9H9V9 463 aa12□□□□□ -0.49
CUX1-217ENST00000558836 IGSF3O75054 1194 aa11.99□□□□□ -0.49
CUX1-217ENST00000558836 GDF11O95390 407 aa11.99□□□□□ -0.49
CUX1-217ENST00000558836 PLCG1P19174 1290 aa11.99□□□□□ -0.49
CUX1-217ENST00000558836 GTF2F1P35269 517 aaKnown RBP eCLIP11.99□□□□□ -0.492e-7■■■□□ 17.7
CUX1-217ENST00000558836 TNNI2P48788 182 aa11.99□□□□□ -0.49
CUX1-217ENST00000558836 EN1Q05925 392 aaPredicted RBP11.99□□□□□ -0.49
CUX1-217ENST00000558836 DESI2Q9BSY9 194 aa11.99□□□□□ -0.49
CUX1-217ENST00000558836 MORC2Q9Y6X9 1032 aaPredicted RBP11.99□□□□□ -0.49
CUX1-217ENST00000558836 SLC37A4O43826 429 aa11.99□□□□□ -0.49
CUX1-217ENST00000558836 OR52Z1P0C646 297 aa11.99□□□□□ -0.49
CUX1-217ENST00000558836 TAL1P17542 331 aaPredicted RBP11.99□□□□□ -0.49
CUX1-217ENST00000558836 PMS1P54277 932 aaKnown RBP11.99□□□□□ -0.49
CUX1-217ENST00000558836 MTF1Q14872 753 aa11.99□□□□□ -0.49
CUX1-217ENST00000558836 TC2NQ8N9U0 490 aa11.99□□□□□ -0.49
CUX1-217ENST00000558836 NELFBQ8WX92 580 aa11.99□□□□□ -0.49
CUX1-217ENST00000558836 TDRD3Q9H7E2 651 aaKnown RBP11.99□□□□□ -0.49
CUX1-217ENST00000558836 RRP9O43818 475 aaKnown RBP11.98□□□□□ -0.49
CUX1-217ENST00000558836 HLA-DOAP06340 250 aa11.98□□□□□ -0.49
CUX1-217ENST00000558836 EZH2Q15910 746 aaKnown RBP11.98□□□□□ -0.49
CUX1-217ENST00000558836 KMT5BQ4FZB7 885 aa11.98□□□□□ -0.49
CUX1-217ENST00000558836 GALNT17Q6IS24 598 aa11.98□□□□□ -0.49
CUX1-217ENST00000558836 HHIPL2Q6UWX4 724 aa11.98□□□□□ -0.49
CUX1-217ENST00000558836 SH3BP5LQ7L8J4 393 aa11.98□□□□□ -0.49
CUX1-217ENST00000558836 KRT25Q7Z3Z0 450 aa11.98□□□□□ -0.49
CUX1-217ENST00000558836 PODNQ7Z5L7 613 aa11.98□□□□□ -0.49
CUX1-217ENST00000558836 CABP7Q86V35 215 aa11.98□□□□□ -0.49
CUX1-217ENST00000558836 CCDC12Q8WUD4 166 aaPredicted RBP11.98□□□□□ -0.49
CUX1-217ENST00000558836 PCNTO95613 3336 aa11.98□□□□□ -0.49
CUX1-217ENST00000558836 SCN9AQ15858 1988 aa11.98□□□□□ -0.49
CUX1-217ENST00000558836 IGKV6D-41A0A0C4DH26 115 aa11.98□□□□□ -0.49
CUX1-217ENST00000558836 A0A1B0GTH6 734 aa11.98□□□□□ -0.49
CUX1-217ENST00000558836 NRDCO43847 1150 aa11.98□□□□□ -0.49
CUX1-217ENST00000558836 NOVP48745 357 aa11.98□□□□□ -0.49
CUX1-217ENST00000558836 TOGARAM2Q6ZUX3 1019 aa11.98□□□□□ -0.49
CUX1-217ENST00000558836 TMEM139Q8IV31 216 aa11.98□□□□□ -0.49
CUX1-217ENST00000558836 NUP88Q99567 741 aaPredicted RBP11.98□□□□□ -0.49
CUX1-217ENST00000558836 BAG1Q99933 345 aaPredicted RBP11.98□□□□□ -0.49
CUX1-217ENST00000558836 TAB2Q9NYJ8 693 aa11.98□□□□□ -0.49
CUX1-217ENST00000558836 FAM198AQ9UFP1 575 aa11.98□□□□□ -0.49
CUX1-217ENST00000558836 SUGT1Q9Y2Z0 365 aa11.98□□□□□ -0.49
CUX1-217ENST00000558836 LRRC37AA6NMS7 1700 aa11.98□□□□□ -0.49
CUX1-217ENST00000558836 COL11A2P13942 1736 aaPredicted RBP11.98□□□□□ -0.49
CUX1-217ENST00000558836 POTEMA6NI47 508 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 C21orf2O43822 256 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 EDIL3O43854 480 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 RBL2Q08999 1139 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 ZNF543Q08ER8 600 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 TBX2Q13207 712 aaPredicted RBP11.97□□□□□ -0.49
CUX1-217ENST00000558836 DACT2Q5SW24 774 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 IGSF22Q8N9C0 903 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 PAXBP1Q9Y5B6 917 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 SLX4Q8IY92 1834 aa11.97□□□□□ -0.49
CUX1-217ENST00000558836 PES1O00541 588 aaKnown RBP11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms