RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 MCM7P33993 719 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 STAT6P42226 847 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 BTDP43251 543 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 NR1I3Q14994 352 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 ZNF827Q17R98 1081 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 SLC27A3Q5K4L6 730 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 CDKAL1Q5VV42 579 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 PDXDC2PQ6P474 469 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 SYT10Q6XYQ8 523 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 DTHD1Q6ZMT9 781 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 KRT25Q7Z3Z0 450 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 PPFIBP1Q86W92 1011 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 TEX11Q8IYF3 940 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 TRMT44Q8IYL2 757 aaKnown RBP8.21□□□□□ -1.09
VPS13C-206ENST00000558338 ZNF397Q8NF99 534 aaPredicted RBP8.21□□□□□ -1.09
VPS13C-206ENST00000558338 TGFBRAP1Q8WUH2 860 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 TSC1Q92574 1164 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 CCDC47Q96A33 483 aaKnown RBP8.21□□□□□ -1.09
VPS13C-206ENST00000558338 GJD4Q96KN9 370 aaPredicted RBP8.21□□□□□ -1.09
VPS13C-206ENST00000558338 AK8Q96MA6 479 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 CD209Q9NNX6 404 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 IL17RBQ9NRM6 502 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 BARHL2Q9NY43 387 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 MAD2L2Q9UI95 211 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 RWDD2AQ9UIY3 292 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 SUGT1Q9Y2Z0 365 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 SNED1Q8TER0 1413 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 QSER1Q2KHR3 1735 aa8.21□□□□□ -1.09
VPS13C-206ENST00000558338 MYH1P12882 1939 aa8.21□□□□□ -1.1
VPS13C-206ENST00000558338 PLIN4Q96Q06 1357 aa8.21□□□□□ -1.1
VPS13C-206ENST00000558338 PALM3A6NDB9 673 aaPredicted RBP8.21□□□□□ -1.1
VPS13C-206ENST00000558338 RASA1P20936 1047 aa8.21□□□□□ -1.1
VPS13C-206ENST00000558338 GNA11P29992 359 aa8.21□□□□□ -1.1
VPS13C-206ENST00000558338 PPP1R2P41236 205 aa8.21□□□□□ -1.1
VPS13C-206ENST00000558338 GPSM2P81274 684 aa8.21□□□□□ -1.1
VPS13C-206ENST00000558338 KCNA1Q09470 495 aa8.21□□□□□ -1.1
VPS13C-206ENST00000558338 PAK1Q13153 545 aa8.21□□□□□ -1.1
VPS13C-206ENST00000558338 STIM1Q13586 685 aa8.21□□□□□ -1.1
VPS13C-206ENST00000558338 PPP4R3BQ5MIZ7 849 aa8.21□□□□□ -1.1
VPS13C-206ENST00000558338 ZNF658Q5TYW1 1059 aaPredicted RBP8.21□□□□□ -1.1
VPS13C-206ENST00000558338 MEX3CQ5U5Q3 659 aaKnown RBP8.21□□□□□ -1.1
VPS13C-206ENST00000558338 PTF1AQ7RTS3 328 aa8.21□□□□□ -1.1
VPS13C-206ENST00000558338 CNGA4Q8IV77 575 aa8.21□□□□□ -1.1
VPS13C-206ENST00000558338 CCDC24Q8N4L8 307 aa8.21□□□□□ -1.1
VPS13C-206ENST00000558338 NEDD1Q8NHV4 660 aa8.21□□□□□ -1.1
VPS13C-206ENST00000558338 CRAMP1Q96RY5 1269 aa8.21□□□□□ -1.1
VPS13C-206ENST00000558338 SEC63Q9UGP8 760 aaKnown RBP8.21□□□□□ -1.1
VPS13C-206ENST00000558338 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.21□□□□□ -1.1
VPS13C-206ENST00000558338 GAKO14976 1311 aa8.21□□□□□ -1.1
VPS13C-206ENST00000558338 LTBP1Q14766 1721 aa8.2□□□□□ -1.1
VPS13C-206ENST00000558338 PPP1R3GB7ZBB8 358 aa8.2□□□□□ -1.1
VPS13C-206ENST00000558338 M0R2N6 131 aa8.2□□□□□ -1.1
VPS13C-206ENST00000558338 STXBP3O00186 592 aa8.2□□□□□ -1.1
VPS13C-206ENST00000558338 PARP1P09874 1014 aaKnown RBP8.2□□□□□ -1.1
VPS13C-206ENST00000558338 HOXA7P31268 230 aaPredicted RBP8.2□□□□□ -1.1
VPS13C-206ENST00000558338 KCNB1Q14721 858 aa8.2□□□□□ -1.1
VPS13C-206ENST00000558338 DIXDC1Q155Q3 683 aa8.2□□□□□ -1.1
VPS13C-206ENST00000558338 WWC2Q6AWC2 1192 aa8.2□□□□□ -1.1
VPS13C-206ENST00000558338 KLHL10Q6JEL2 608 aa8.2□□□□□ -1.1
VPS13C-206ENST00000558338 SMIM5Q71RC9 77 aa8.2□□□□□ -1.1
VPS13C-206ENST00000558338 HEATR3Q7Z4Q2 680 aa8.2□□□□□ -1.1
VPS13C-206ENST00000558338 TMEM139Q8IV31 216 aa8.2□□□□□ -1.1
VPS13C-206ENST00000558338 SMAP1Q8IYB5 467 aaPredicted RBP8.2□□□□□ -1.1
VPS13C-206ENST00000558338 TC2NQ8N9U0 490 aa8.2□□□□□ -1.1
VPS13C-206ENST00000558338 NOC3LQ8WTT2 800 aaKnown RBP8.2□□□□□ -1.1
VPS13C-206ENST00000558338 RRP36Q96EU6 259 aaKnown RBP8.2□□□□□ -1.1
VPS13C-206ENST00000558338 DYNLL2Q96FJ2 89 aa8.2□□□□□ -1.1
VPS13C-206ENST00000558338 EYA3Q99504 573 aa8.2□□□□□ -1.1
VPS13C-206ENST00000558338 TMEM47Q9BQJ4 181 aa8.2□□□□□ -1.1
VPS13C-206ENST00000558338 CCSER1Q9C0I3 900 aa8.2□□□□□ -1.1
VPS13C-206ENST00000558338 C6orf50Q9HD87 102 aa8.2□□□□□ -1.1
VPS13C-206ENST00000558338 DISC1Q9NRI5 854 aa8.2□□□□□ -1.1
VPS13C-206ENST00000558338 SAMSN1Q9NSI8 373 aaKnown RBP8.2□□□□□ -1.1
VPS13C-206ENST00000558338 ADD3Q9UEY8 706 aaKnown RBP8.2□□□□□ -1.1
VPS13C-206ENST00000558338 LIMA1Q9UHB6 759 aaKnown RBP8.2□□□□□ -1.1
VPS13C-206ENST00000558338 DNAI1Q9UI46 699 aa8.2□□□□□ -1.1
VPS13C-206ENST00000558338 ZNF215Q9UL58 517 aaPredicted RBP8.2□□□□□ -1.1
VPS13C-206ENST00000558338 STX8Q9UNK0 236 aa8.2□□□□□ -1.1
VPS13C-206ENST00000558338 CTNND2Q9UQB3 1225 aa8.2□□□□□ -1.1
VPS13C-206ENST00000558338 JAG2Q9Y219 1238 aa8.2□□□□□ -1.1
VPS13C-206ENST00000558338 PPP2R2CQ9Y2T4 447 aa8.2□□□□□ -1.1
VPS13C-206ENST00000558338 FLT1P17948 1338 aa8.2□□□□□ -1.1
VPS13C-206ENST00000558338 FAM205AQ6ZU69 1335 aa8.2□□□□□ -1.1
VPS13C-206ENST00000558338 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.19□□□□□ -1.1
VPS13C-206ENST00000558338 ESYT2A0FGR8 921 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 USP17L3A6NCW0 530 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 USP17L4A6NCW7 530 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 WNT7AO00755 349 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 RPN1P04843 607 aaKnown RBP8.19□□□□□ -1.1
VPS13C-206ENST00000558338 SERPINB2P05120 415 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 CCDC175P0C221 793 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 HOXA10P31260 410 aaPredicted RBP8.19□□□□□ -1.1
VPS13C-206ENST00000558338 CDK8P49336 464 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 CCDC93Q567U6 631 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 SOGA3Q5TF21 947 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 RRAGBQ5VZM2 374 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 USP17L1Q7RTZ2 530 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 AMIGO3Q86WK7 504 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 MAPKAPK5Q8IW41 473 aa8.19□□□□□ -1.1
VPS13C-206ENST00000558338 REXO1L1PQ8IX06 675 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms