RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 SPATS1Q496A3 300 aa6.81□□□□□ -1.32
SCFD1-216ENST00000555550 CDCP2Q5VXM1 449 aa6.81□□□□□ -1.32
SCFD1-216ENST00000555550 ATG4CQ96DT6 458 aa6.81□□□□□ -1.32
SCFD1-216ENST00000555550 COPRSQ9NQ92 184 aa6.81□□□□□ -1.32
SCFD1-216ENST00000555550 KBTBD4Q9NVX7 518 aa6.81□□□□□ -1.32
SCFD1-216ENST00000555550 HCFC2Q9Y5Z7 792 aa6.81□□□□□ -1.32
SCFD1-216ENST00000555550 IRS2Q9Y4H2 1338 aa6.8□□□□□ -1.32
SCFD1-216ENST00000555550 MSL3P1P0C860 447 aa6.8□□□□□ -1.32
SCFD1-216ENST00000555550 VAV1P15498 845 aa6.8□□□□□ -1.32
SCFD1-216ENST00000555550 IGFBP6P24592 240 aaPredicted RBP6.8□□□□□ -1.32
SCFD1-216ENST00000555550 TAGLNQ01995 201 aaKnown RBP6.8□□□□□ -1.32
SCFD1-216ENST00000555550 RAD51AP2Q09MP3 1159 aa6.8□□□□□ -1.32
SCFD1-216ENST00000555550 PUM1Q14671 1186 aaKnown RBP eCLIP6.8□□□□□ -1.32
SCFD1-216ENST00000555550 KRTAP5-3Q6L8H2 238 aa6.8□□□□□ -1.32
SCFD1-216ENST00000555550 FERMT3Q86UX7 667 aa6.8□□□□□ -1.32
SCFD1-216ENST00000555550 LSRQ86X29 649 aaPredicted RBP6.8□□□□□ -1.32
SCFD1-216ENST00000555550 TMEM192Q8IY95 271 aa6.8□□□□□ -1.32
SCFD1-216ENST00000555550 BORCS6Q96GS4 357 aa6.8□□□□□ -1.32
SCFD1-216ENST00000555550 CRELD1Q96HD1 420 aa6.8□□□□□ -1.32
SCFD1-216ENST00000555550 CNNM2Q9H8M5 875 aa6.8□□□□□ -1.32
SCFD1-216ENST00000555550 PLA2G2DQ9UNK4 145 aa6.8□□□□□ -1.32
SCFD1-216ENST00000555550 SORBS3O60504 671 aa6.79□□□□□ -1.32
SCFD1-216ENST00000555550 ZNF205O95201 554 aa6.79□□□□□ -1.32
SCFD1-216ENST00000555550 ATE1O95260 518 aa6.79□□□□□ -1.32
SCFD1-216ENST00000555550 MVKQ03426 396 aa6.79□□□□□ -1.32
SCFD1-216ENST00000555550 PLEKHN1Q494U1 663 aaPredicted RBP6.79□□□□□ -1.32
SCFD1-216ENST00000555550 ZC3H14Q6PJT7 736 aaKnown RBP6.79□□□□□ -1.32
SCFD1-216ENST00000555550 CRTC3Q6UUV7 619 aa6.79□□□□□ -1.32
SCFD1-216ENST00000555550 MKRN2Q9H000 416 aaKnown RBP6.79□□□□□ -1.32
SCFD1-216ENST00000555550 ANTXR1Q9H6X2 564 aa6.79□□□□□ -1.32
SCFD1-216ENST00000555550 MRS2Q9HD23 443 aa6.79□□□□□ -1.32
SCFD1-216ENST00000555550 A0A1W2PQ27 194 aa6.78□□□□□ -1.32
SCFD1-216ENST00000555550 A0A1W2PQ64 194 aa6.78□□□□□ -1.32
SCFD1-216ENST00000555550 A0A1W2PQC6 194 aa6.78□□□□□ -1.32
SCFD1-216ENST00000555550 A0A1W2PQD8 194 aa6.78□□□□□ -1.32
SCFD1-216ENST00000555550 ZBTB7CA1YPR0 619 aa6.78□□□□□ -1.32
SCFD1-216ENST00000555550 PFKLP17858 780 aa6.78□□□□□ -1.32
SCFD1-216ENST00000555550 ERCC3P19447 782 aa6.78□□□□□ -1.32
SCFD1-216ENST00000555550 BMP8BP34820 402 aa6.78□□□□□ -1.32
SCFD1-216ENST00000555550 MAPKAPK2P49137 400 aa6.78□□□□□ -1.32
SCFD1-216ENST00000555550 CLCQ05315 142 aa6.78□□□□□ -1.32
SCFD1-216ENST00000555550 HHIPL2Q6UWX4 724 aa6.78□□□□□ -1.32
SCFD1-216ENST00000555550 NLRC3Q7RTR2 1065 aa6.78□□□□□ -1.32
SCFD1-216ENST00000555550 VTI1BQ9UEU0 232 aa6.78□□□□□ -1.32
SCFD1-216ENST00000555550 SUSD2Q9UGT4 822 aa6.78□□□□□ -1.32
SCFD1-216ENST00000555550 EIF4A3P38919 411 aaKnown RBP6.77□□□□□ -1.33
SCFD1-216ENST00000555550 CRKP46108 304 aa6.77□□□□□ -1.33
SCFD1-216ENST00000555550 NR1I3Q14994 352 aa6.77□□□□□ -1.33
SCFD1-216ENST00000555550 RTP2Q5QGT7 225 aa6.77□□□□□ -1.33
SCFD1-216ENST00000555550 UBXN11Q5T124 520 aa6.77□□□□□ -1.33
SCFD1-216ENST00000555550 GK5Q6ZS86 529 aa6.77□□□□□ -1.33
SCFD1-216ENST00000555550 NLGN1Q8N2Q7 840 aa6.77□□□□□ -1.33
SCFD1-216ENST00000555550 SPATA25Q9BR10 227 aa6.77□□□□□ -1.33
SCFD1-216ENST00000555550 PCDHB12Q9Y5F1 795 aa6.77□□□□□ -1.33
SCFD1-216ENST00000555550 ROBO2Q9HCK4 1378 aa6.77□□□□□ -1.33
SCFD1-216ENST00000555550 GREM1O60565 184 aa6.76□□□□□ -1.33
SCFD1-216ENST00000555550 PLA2G1BP04054 148 aaKnown RBP6.76□□□□□ -1.33
SCFD1-216ENST00000555550 GSTM1P09488 218 aa6.76□□□□□ -1.33
SCFD1-216ENST00000555550 ATF2P15336 505 aa6.76□□□□□ -1.33
SCFD1-216ENST00000555550 FOXO4P98177 505 aa6.76□□□□□ -1.33
SCFD1-216ENST00000555550 AUHQ13825 339 aaKnown RBP6.76□□□□□ -1.33
SCFD1-216ENST00000555550 VWA3BQ502W6 1294 aa6.76□□□□□ -1.33
SCFD1-216ENST00000555550 SEZ6Q53EL9 994 aa6.76□□□□□ -1.33
SCFD1-216ENST00000555550 NT5DC1Q5TFE4 455 aa6.76□□□□□ -1.33
SCFD1-216ENST00000555550 FBXO33Q7Z6M2 555 aa6.76□□□□□ -1.33
SCFD1-216ENST00000555550 FNIP1Q8TF40 1166 aa6.76□□□□□ -1.33
SCFD1-216ENST00000555550 ZNF526Q8TF50 670 aaPredicted RBP6.76□□□□□ -1.33
SCFD1-216ENST00000555550 SLC6A18Q96N87 628 aa6.76□□□□□ -1.33
SCFD1-216ENST00000555550 GPR20Q99678 358 aa6.76□□□□□ -1.33
SCFD1-216ENST00000555550 EHMT1Q9H9B1 1298 aa6.76□□□□□ -1.33
SCFD1-216ENST00000555550 SUPT16HQ9Y5B9 1047 aaKnown RBP6.76□□□□□ -1.33
SCFD1-216ENST00000555550 FAM86C2PA6NEL3 165 aa6.75□□□□□ -1.33
SCFD1-216ENST00000555550 ENDOUP21128 410 aaKnown RBP6.75□□□□□ -1.33
SCFD1-216ENST00000555550 ITGAEP38570 1179 aa6.75□□□□□ -1.33
SCFD1-216ENST00000555550 ZFYVE27Q5T4F4 411 aa6.75□□□□□ -1.33
SCFD1-216ENST00000555550 ZNF296Q8WUU4 475 aaPredicted RBP6.75□□□□□ -1.33
SCFD1-216ENST00000555550 EAF1Q96JC9 268 aaPredicted RBP6.75□□□□□ -1.33
SCFD1-216ENST00000555550 LRRC3Q9BY71 257 aa6.75□□□□□ -1.33
SCFD1-216ENST00000555550 NME1P15531 152 aaKnown RBP6.74□□□□□ -1.33
SCFD1-216ENST00000555550 MCM4P33991 863 aa6.74□□□□□ -1.33
SCFD1-216ENST00000555550 CCNFP41002 786 aa6.74□□□□□ -1.33
SCFD1-216ENST00000555550 TARBP2Q15633 366 aaKnown RBP6.74□□□□□ -1.33
SCFD1-216ENST00000555550 LIPIQ6XZB0 460 aa6.74□□□□□ -1.33
SCFD1-216ENST00000555550 ERMP1Q7Z2K6 904 aa6.74□□□□□ -1.33
SCFD1-216ENST00000555550 JAMLQ86YT9 394 aa6.74□□□□□ -1.33
SCFD1-216ENST00000555550 HOMEZQ8IX15 550 aa6.74□□□□□ -1.33
SCFD1-216ENST00000555550 NAT16Q8N8M0 369 aa6.74□□□□□ -1.33
SCFD1-216ENST00000555550 DDX1Q92499 740 aaKnown RBP6.74□□□□□ -1.33
SCFD1-216ENST00000555550 DSCC1Q9BVC3 393 aa6.74□□□□□ -1.33
SCFD1-216ENST00000555550 SLC12A9Q9BXP2 914 aa6.74□□□□□ -1.33
SCFD1-216ENST00000555550 KCNQ5Q9NR82 932 aa6.74□□□□□ -1.33
SCFD1-216ENST00000555550 USP40Q9NVE5 1235 aa6.74□□□□□ -1.33
SCFD1-216ENST00000555550 UBP1Q9NZI7 540 aa6.74□□□□□ -1.33
SCFD1-216ENST00000555550 A0A1W2PQJ5 194 aa6.73□□□□□ -1.33
SCFD1-216ENST00000555550 K7ESM1 405 aa6.73□□□□□ -1.33
SCFD1-216ENST00000555550 DBHP09172 617 aa6.73□□□□□ -1.33
SCFD1-216ENST00000555550 CAP1Q01518 475 aa6.73□□□□□ -1.33
SCFD1-216ENST00000555550 TMCO4Q5TGY1 634 aa6.73□□□□□ -1.33
SCFD1-216ENST00000555550 HLA-DQA1Q5Y7H0 255 aa6.73□□□□□ -1.33
SCFD1-216ENST00000555550 BICRALQ6AI39 1079 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms