RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 AGTPBP1Q9UPW5 1226 aa12.44□□□□□ -0.42
TDP1-211ENST00000555178 WDR33Q9C0J8 1336 aaKnown RBP12.44□□□□□ -0.42
TDP1-211ENST00000555178 ZSWIM8A7E2V4 1837 aa12.44□□□□□ -0.42
TDP1-211ENST00000555178 F13A1P00488 732 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 ZBTB48P10074 688 aaPredicted RBP12.43□□□□□ -0.42
TDP1-211ENST00000555178 NPY5RQ15761 445 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 USH1GQ495M9 461 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 KRT40Q6A162 431 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 PROCA1Q8NCQ7 364 aaPredicted RBP12.43□□□□□ -0.42
TDP1-211ENST00000555178 REPS2Q8NFH8 660 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 TXNRD2Q9NNW7 524 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 CREBZFQ9NS37 354 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 BTBD7Q9P203 1132 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 RIPK3Q9Y572 518 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 ZNFX1Q9P2E3 1918 aaKnown RBP12.43□□□□□ -0.42
TDP1-211ENST00000555178 LCTP09848 1927 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 MYH15Q9Y2K3 1946 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 KIF28PB7ZC32 967 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 USP17L15C9J2P7 530 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 USP17L13C9JLJ4 530 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 USP17L11C9JVI0 530 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 USP17L18D6R9N7 530 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 USP17L22D6RA61 530 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 USP17L17D6RBQ6 530 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 USP17L19D6RCP7 530 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 USP17L20D6RJB6 530 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 OPLAHO14841 1288 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 PDCP20941 246 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 DSG3P32926 999 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 GNAQP50148 359 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 AKAP17AQ02040 695 aaKnown RBP12.43□□□□□ -0.42
TDP1-211ENST00000555178 USP17L24Q0WX57 530 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 PFKFB3Q16875 520 aaPredicted RBP12.43□□□□□ -0.42
TDP1-211ENST00000555178 CPXCR1Q8N123 301 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 FBXO18Q8NFZ0 1043 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 OXER1Q8TDS5 423 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 TBC1D5Q92609 795 aa12.43□□□□□ -0.42
TDP1-211ENST00000555178 RANBP17Q9H2T7 1088 aaKnown RBP12.43□□□□□ -0.42
TDP1-211ENST00000555178 RAVER2Q9HCJ3 691 aaKnown RBP12.43□□□□□ -0.42
TDP1-211ENST00000555178 CENPFP49454 3210 aa12.42□□□□□ -0.42
TDP1-211ENST00000555178 RASSF10A6NK89 507 aa12.42□□□□□ -0.42
TDP1-211ENST00000555178 STXBP3O00186 592 aa12.42□□□□□ -0.42
TDP1-211ENST00000555178 PDHXO00330 501 aa12.42□□□□□ -0.42
TDP1-211ENST00000555178 VWA5AO00534 786 aa12.42□□□□□ -0.42
TDP1-211ENST00000555178 CNMDO75829 334 aa12.42□□□□□ -0.42
TDP1-211ENST00000555178 SCG2P13521 617 aa12.42□□□□□ -0.42
TDP1-211ENST00000555178 HOXA7P31268 230 aaPredicted RBP12.42□□□□□ -0.42
TDP1-211ENST00000555178 GTF2A2P52657 109 aa12.42□□□□□ -0.42
TDP1-211ENST00000555178 KIF23Q02241 960 aaPredicted RBP12.42□□□□□ -0.42
TDP1-211ENST00000555178 TMEM132BQ14DG7 1078 aa12.42□□□□□ -0.42
TDP1-211ENST00000555178 DEFB115Q30KQ5 88 aa12.42□□□□□ -0.42
TDP1-211ENST00000555178 MCTP1Q6DN14 999 aa12.42□□□□□ -0.42
TDP1-211ENST00000555178 HEATR3Q7Z4Q2 680 aa12.42□□□□□ -0.42
TDP1-211ENST00000555178 PRPF38AQ8NAV1 312 aaKnown RBP12.42□□□□□ -0.42
TDP1-211ENST00000555178 ADAMTS5Q9UNA0 930 aa12.42□□□□□ -0.42
TDP1-211ENST00000555178 ZBTB5O15062 677 aa12.42□□□□□ -0.42
TDP1-211ENST00000555178 PLA2G6O60733 806 aa12.42□□□□□ -0.42
TDP1-211ENST00000555178 CETPP11597 493 aa12.42□□□□□ -0.42
TDP1-211ENST00000555178 COG2Q14746 738 aa12.42□□□□□ -0.42
TDP1-211ENST00000555178 Q3C1V9 767 aa12.42□□□□□ -0.42
TDP1-211ENST00000555178 CHURC1Q8WUH1 139 aa12.42□□□□□ -0.42
TDP1-211ENST00000555178 RRP36Q96EU6 259 aaKnown RBP12.42□□□□□ -0.42
TDP1-211ENST00000555178 CAPNS2Q96L46 248 aa12.42□□□□□ -0.42
TDP1-211ENST00000555178 LZTS2Q9BRK4 669 aa12.42□□□□□ -0.42
TDP1-211ENST00000555178 SLC38A10Q9HBR0 1119 aa12.42□□□□□ -0.42
TDP1-211ENST00000555178 KIF3AQ9Y496 699 aa12.42□□□□□ -0.42
TDP1-211ENST00000555178 PNMA6FA0A0J9YX94 578 aa12.41□□□□□ -0.42
TDP1-211ENST00000555178 TESPA1A2RU30 521 aaPredicted RBP12.41□□□□□ -0.42
TDP1-211ENST00000555178 FAM205CA6NFA0 338 aa12.41□□□□□ -0.42
TDP1-211ENST00000555178 ECM2O94769 699 aaPredicted RBP12.41□□□□□ -0.42
TDP1-211ENST00000555178 SMARCA1P28370 1054 aa12.41□□□□□ -0.42
TDP1-211ENST00000555178 VEGFBP49765 207 aa12.41□□□□□ -0.42
TDP1-211ENST00000555178 RESTQ13127 1097 aa12.41□□□□□ -0.42
TDP1-211ENST00000555178 EARS2Q5JPH6 523 aaKnown RBP12.41□□□□□ -0.42
TDP1-211ENST00000555178 FAM160B2Q86V87 743 aa12.41□□□□□ -0.42
TDP1-211ENST00000555178 RASGRP4Q8TDF6 673 aa12.41□□□□□ -0.42
TDP1-211ENST00000555178 RBPJLQ9UBG7 517 aa12.41□□□□□ -0.42
TDP1-211ENST00000555178 ZNF214Q9UL59 606 aaPredicted RBP12.41□□□□□ -0.42
TDP1-211ENST00000555178 MYH7BA7E2Y1 1941 aa12.41□□□□□ -0.42
TDP1-211ENST00000555178 HERVK_113P62684 666 aa12.41□□□□□ -0.42
TDP1-211ENST00000555178 MUM1L1Q5H9M0 696 aa12.41□□□□□ -0.42
TDP1-211ENST00000555178 FASTKD5Q7L8L6 764 aaKnown RBP12.41□□□□□ -0.42
TDP1-211ENST00000555178 MMP1P03956 469 aa12.4□□□□□ -0.42
TDP1-211ENST00000555178 NR5A1Q13285 461 aa12.4□□□□□ -0.42
TDP1-211ENST00000555178 WASF1Q92558 559 aa12.4□□□□□ -0.42
TDP1-211ENST00000555178 PAGR1Q9BTK6 254 aa12.4□□□□□ -0.42
TDP1-211ENST00000555178 HOMER2Q9NSB8 354 aa12.4□□□□□ -0.42
TDP1-211ENST00000555178 BARHL2Q9NY43 387 aa12.4□□□□□ -0.42
TDP1-211ENST00000555178 RBBP6Q7Z6E9 1792 aaKnown RBP12.4□□□□□ -0.42
TDP1-211ENST00000555178 BTBD18B2RXH4 712 aa12.39□□□□□ -0.43
TDP1-211ENST00000555178 BAG4O95429 457 aaKnown RBP12.39□□□□□ -0.43
TDP1-211ENST00000555178 IRX3P78415 501 aaPredicted RBP12.39□□□□□ -0.43
TDP1-211ENST00000555178 TRIM29Q14134 588 aa12.39□□□□□ -0.43
TDP1-211ENST00000555178 HHIPL1Q96JK4 782 aa12.39□□□□□ -0.43
TDP1-211ENST00000555178 PURBQ96QR8 312 aaKnown RBP12.39□□□□□ -0.43
TDP1-211ENST00000555178 PHF20Q9BVI0 1012 aa12.39□□□□□ -0.43
TDP1-211ENST00000555178 FTOQ9C0B1 505 aaKnown RBP eCLIP12.39□□□□□ -0.43
TDP1-211ENST00000555178 GDPD2Q9HCC8 539 aa12.39□□□□□ -0.43
TDP1-211ENST00000555178 TMEM260Q9NX78 707 aa12.39□□□□□ -0.43
TDP1-211ENST00000555178 SEC63Q9UGP8 760 aaKnown RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms