RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 KRIT1O00522 736 aa12.68□□□□□ -0.38
SYNE2-208ENST00000553289 ATP8B1O43520 1251 aa12.68□□□□□ -0.38
SYNE2-208ENST00000553289 FMNL1O95466 1100 aaPredicted RBP12.68□□□□□ -0.38
SYNE2-208ENST00000553289 H2AFZP0C0S5 128 aa12.68□□□□□ -0.38
SYNE2-208ENST00000553289 TROVE2P10155 538 aaKnown RBP eCLIP12.68□□□□□ -0.38
SYNE2-208ENST00000553289 EEF1GP26641 437 aaKnown RBP12.68□□□□□ -0.38
SYNE2-208ENST00000553289 CHRNDQ07001 517 aa12.68□□□□□ -0.38
SYNE2-208ENST00000553289 NAA25Q14CX7 972 aa12.68□□□□□ -0.38
SYNE2-208ENST00000553289 LRRC24Q50LG9 513 aa12.68□□□□□ -0.38
SYNE2-208ENST00000553289 H2AFVQ71UI9 128 aa12.68□□□□□ -0.38
SYNE2-208ENST00000553289 C1orf112Q9NSG2 853 aa12.68□□□□□ -0.38
SYNE2-208ENST00000553289 M0QZ92 97 aa12.68□□□□□ -0.38
SYNE2-208ENST00000553289 BUB1BO60566 1050 aaPredicted RBP12.68□□□□□ -0.38
SYNE2-208ENST00000553289 FAM98CQ17RN3 349 aaKnown RBP12.68□□□□□ -0.38
SYNE2-208ENST00000553289 ANKRD20A3Q5VUR7 823 aa12.68□□□□□ -0.38
SYNE2-208ENST00000553289 TARBP1Q13395 1621 aaKnown RBP12.68□□□□□ -0.38
SYNE2-208ENST00000553289 KCNK3O14649 394 aa12.68□□□□□ -0.38
SYNE2-208ENST00000553289 KRT19P08727 400 aa12.68□□□□□ -0.38
SYNE2-208ENST00000553289 GYG1P46976 350 aa12.68□□□□□ -0.38
SYNE2-208ENST00000553289 BCAMP50895 628 aa12.68□□□□□ -0.38
SYNE2-208ENST00000553289 PRR16Q569H4 304 aa12.68□□□□□ -0.38
SYNE2-208ENST00000553289 PHLDB2Q86SQ0 1253 aa12.68□□□□□ -0.38
SYNE2-208ENST00000553289 FAM178BQ8IXR5 827 aa12.68□□□□□ -0.38
SYNE2-208ENST00000553289 SYMPKQ92797 1274 aaKnown RBP12.68□□□□□ -0.38
SYNE2-208ENST00000553289 HAUS1Q96CS2 278 aa12.68□□□□□ -0.38
SYNE2-208ENST00000553289 DHTKD1Q96HY7 919 aaPredicted RBP12.68□□□□□ -0.38
SYNE2-208ENST00000553289 EPN1Q9Y6I3 576 aaPredicted RBP12.68□□□□□ -0.38
SYNE2-208ENST00000553289 COPB1P53618 953 aaKnown RBP12.68□□□□□ -0.38
SYNE2-208ENST00000553289 PTGDRQ13258 359 aa12.68□□□□□ -0.38
SYNE2-208ENST00000553289 GPATCH4Q5T3I0 446 aaKnown RBP12.68□□□□□ -0.38
SYNE2-208ENST00000553289 SDR42E1Q8WUS8 393 aa12.68□□□□□ -0.38
SYNE2-208ENST00000553289 VPS37BQ9H9H4 285 aa12.68□□□□□ -0.38
SYNE2-208ENST00000553289 PDE6CP51160 858 aa12.68□□□□□ -0.38
SYNE2-208ENST00000553289 IRX3P78415 501 aaPredicted RBP12.68□□□□□ -0.38
SYNE2-208ENST00000553289 ASPRV1Q53RT3 343 aa12.68□□□□□ -0.38
SYNE2-208ENST00000553289 TMC4Q7Z404 712 aa12.68□□□□□ -0.38
SYNE2-208ENST00000553289 CARMIL3Q8ND23 1372 aa12.67□□□□□ -0.38
SYNE2-208ENST00000553289 ZNF521Q96K83 1311 aa12.67□□□□□ -0.38
SYNE2-208ENST00000553289 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.67□□□□□ -0.38
SYNE2-208ENST00000553289 TBC1D8O95759 1140 aa12.67□□□□□ -0.38
SYNE2-208ENST00000553289 STX2P32856 288 aa12.67□□□□□ -0.38
SYNE2-208ENST00000553289 CYP2J2P51589 502 aa12.67□□□□□ -0.38
SYNE2-208ENST00000553289 ARHGEF2Q92974 986 aaKnown RBP12.67□□□□□ -0.38
SYNE2-208ENST00000553289 MRRFQ96E11 262 aaKnown RBP12.67□□□□□ -0.38
SYNE2-208ENST00000553289 PPANQ9NQ55 473 aaKnown RBP12.67□□□□□ -0.38
SYNE2-208ENST00000553289 DBNLQ9UJU6 430 aaKnown RBP12.67□□□□□ -0.38
SYNE2-208ENST00000553289 LEMD3Q9Y2U8 911 aa12.67□□□□□ -0.38
SYNE2-208ENST00000553289 CLIC4Q9Y696 253 aa12.67□□□□□ -0.38
SYNE2-208ENST00000553289 EFCAB6Q5THR3 1501 aa12.67□□□□□ -0.38
SYNE2-208ENST00000553289 PPIP5K2O43314 1243 aa12.67□□□□□ -0.38
SYNE2-208ENST00000553289 IL6STP40189 918 aaPredicted RBP12.67□□□□□ -0.38
SYNE2-208ENST00000553289 BTDP43251 543 aa12.67□□□□□ -0.38
SYNE2-208ENST00000553289 CERKLQ49MI3 558 aaPredicted RBP12.67□□□□□ -0.38
SYNE2-208ENST00000553289 DCAF15Q66K64 600 aa12.67□□□□□ -0.38
SYNE2-208ENST00000553289 RSAD2Q8WXG1 361 aa12.67□□□□□ -0.38
SYNE2-208ENST00000553289 RABGGTAQ92696 567 aa12.67□□□□□ -0.38
SYNE2-208ENST00000553289 USH1CQ9Y6N9 552 aa12.67□□□□□ -0.38
SYNE2-208ENST00000553289 FAM71BQ8TC56 605 aa12.67□□□□□ -0.38
SYNE2-208ENST00000553289 ABCC12Q96J65 1359 aa12.67□□□□□ -0.38
SYNE2-208ENST00000553289 GCFC2P16383 781 aaKnown RBP12.67□□□□□ -0.38
SYNE2-208ENST00000553289 LIG4P49917 911 aa12.67□□□□□ -0.38
SYNE2-208ENST00000553289 KIF11P52732 1056 aa12.67□□□□□ -0.38
SYNE2-208ENST00000553289 ADAM9Q13443 819 aa12.67□□□□□ -0.38
SYNE2-208ENST00000553289 APOA5Q6Q788 366 aa12.67□□□□□ -0.38
SYNE2-208ENST00000553289 SLC5A4Q9NY91 659 aa12.67□□□□□ -0.38
SYNE2-208ENST00000553289 K7ENM7 598 aa12.66□□□□□ -0.38
SYNE2-208ENST00000553289 MAN1A1P33908 653 aa12.66□□□□□ -0.38
SYNE2-208ENST00000553289 BPIFB4P59827 614 aa12.66□□□□□ -0.38
SYNE2-208ENST00000553289 ARHGEF16Q5VV41 709 aa12.66□□□□□ -0.38
SYNE2-208ENST00000553289 SH3BP5O60239 455 aa12.66□□□□□ -0.38
SYNE2-208ENST00000553289 TNNC2P02585 160 aa12.66□□□□□ -0.38
SYNE2-208ENST00000553289 POLR2BP30876 1174 aaKnown RBP12.66□□□□□ -0.38
SYNE2-208ENST00000553289 ICA1Q05084 483 aa12.66□□□□□ -0.38
SYNE2-208ENST00000553289 FAM102BQ5T8I3 360 aa12.66□□□□□ -0.38
SYNE2-208ENST00000553289 MAP3K21Q5TCX8 1036 aa12.66□□□□□ -0.38
SYNE2-208ENST00000553289 DESI2Q9BSY9 194 aa12.66□□□□□ -0.38
SYNE2-208ENST00000553289 PCDHA4Q9UN74 947 aa12.66□□□□□ -0.38
SYNE2-208ENST00000553289 SEPT6Q14141 434 aa12.66□□□□□ -0.38
SYNE2-208ENST00000553289 PPP1R2P3Q6NXS1 205 aa12.66□□□□□ -0.38
SYNE2-208ENST00000553289 NSUN7Q8NE18 718 aaKnown RBP12.66□□□□□ -0.38
SYNE2-208ENST00000553289 GAP43P17677 238 aa12.66□□□□□ -0.38
SYNE2-208ENST00000553289 POLR2FP61218 127 aaKnown RBP12.66□□□□□ -0.38
SYNE2-208ENST00000553289 CASC4Q6P4E1 433 aa12.66□□□□□ -0.38
SYNE2-208ENST00000553289 PDZD4Q76G19 769 aaPredicted RBP12.66□□□□□ -0.38
SYNE2-208ENST00000553289 GLG1Q92896 1179 aa12.66□□□□□ -0.38
SYNE2-208ENST00000553289 FAM81BQ96LP2 452 aa12.66□□□□□ -0.38
SYNE2-208ENST00000553289 CDC23Q9UJX2 597 aa12.66□□□□□ -0.38
SYNE2-208ENST00000553289 ZNF215Q9UL58 517 aaPredicted RBP12.66□□□□□ -0.38
SYNE2-208ENST00000553289 ZNF804BA4D1E1 1349 aa12.66□□□□□ -0.38
SYNE2-208ENST00000553289 ZWINTO95229 277 aa12.65□□□□□ -0.38
SYNE2-208ENST00000553289 ATF7P17544 494 aaPredicted RBP12.65□□□□□ -0.38
SYNE2-208ENST00000553289 ERCC3P19447 782 aa12.65□□□□□ -0.38
SYNE2-208ENST00000553289 IRX4P78413 519 aa12.65□□□□□ -0.38
SYNE2-208ENST00000553289 PALM2Q8IXS6 379 aa12.65□□□□□ -0.38
SYNE2-208ENST00000553289 ZBTB9Q96C00 473 aa12.65□□□□□ -0.38
SYNE2-208ENST00000553289 CLIC6Q96NY7 704 aa12.65□□□□□ -0.38
SYNE2-208ENST00000553289 RAB3IPQ96QF0 476 aaPredicted RBP12.65□□□□□ -0.38
SYNE2-208ENST00000553289 KLHL14Q9P2G3 628 aa12.65□□□□□ -0.38
SYNE2-208ENST00000553289 MBD5Q9P267 1494 aa12.65□□□□□ -0.38
SYNE2-208ENST00000553289 ZNF853P0CG23 659 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms