RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 ITIH2P19823 946 aa8.41□□□□□ -1.06
LIMA1-210ENST00000552045 ECI1P42126 302 aa8.41□□□□□ -1.06
LIMA1-210ENST00000552045 CYP4F3Q08477 520 aa8.41□□□□□ -1.06
LIMA1-210ENST00000552045 STRN3Q13033 797 aa8.41□□□□□ -1.06
LIMA1-210ENST00000552045 DHCR24Q15392 516 aa8.41□□□□□ -1.06
LIMA1-210ENST00000552045 TMC3Q7Z5M5 1100 aa8.41□□□□□ -1.06
LIMA1-210ENST00000552045 TOP6BLQ8N6T0 577 aa8.41□□□□□ -1.06
LIMA1-210ENST00000552045 COX4I2Q96KJ9 171 aa8.41□□□□□ -1.06
LIMA1-210ENST00000552045 C1GALT1Q9NS00 363 aa8.41□□□□□ -1.06
LIMA1-210ENST00000552045 PHLDB1Q86UU1 1377 aa8.4□□□□□ -1.06
LIMA1-210ENST00000552045 TCRBV16S1A1N1A0A5B0 115 aa8.4□□□□□ -1.06
LIMA1-210ENST00000552045 RBAK-RBAKDNI3L0D1 243 aa8.4□□□□□ -1.06
LIMA1-210ENST00000552045 ALDH1L1O75891 902 aa8.4□□□□□ -1.06
LIMA1-210ENST00000552045 JMJD7P0C870 316 aa8.4□□□□□ -1.06
LIMA1-210ENST00000552045 SPATA31C1P0DKV0 1188 aa8.4□□□□□ -1.06
LIMA1-210ENST00000552045 NOS3P29474 1203 aa8.4□□□□□ -1.06
LIMA1-210ENST00000552045 FLT3P36888 993 aa8.4□□□□□ -1.06
LIMA1-210ENST00000552045 UVSSAQ2YD98 709 aa8.4□□□□□ -1.06
LIMA1-210ENST00000552045 STYK1Q6J9G0 422 aa8.4□□□□□ -1.06
LIMA1-210ENST00000552045 USP53Q70EK8 1073 aa8.4□□□□□ -1.06
LIMA1-210ENST00000552045 WFDC12Q8WWY7 111 aa8.4□□□□□ -1.06
LIMA1-210ENST00000552045 DUSP23Q9BVJ7 150 aa8.4□□□□□ -1.06
LIMA1-210ENST00000552045 CHST7Q9NS84 486 aa8.4□□□□□ -1.06
LIMA1-210ENST00000552045 TCEAL9Q9UHQ7 104 aa8.4□□□□□ -1.06
LIMA1-210ENST00000552045 KCNH3Q9ULD8 1083 aa8.4□□□□□ -1.06
LIMA1-210ENST00000552045 TRAF6Q9Y4K3 522 aa8.4□□□□□ -1.06
LIMA1-210ENST00000552045 ASXL2Q76L83 1435 aa8.39□□□□□ -1.07
LIMA1-210ENST00000552045 C9orf172C9J069 976 aa8.39□□□□□ -1.07
LIMA1-210ENST00000552045 H0Y8X5 98 aa8.39□□□□□ -1.07
LIMA1-210ENST00000552045 KPNA6O60684 536 aa8.39□□□□□ -1.07
LIMA1-210ENST00000552045 RASGRP1O95267 797 aa8.39□□□□□ -1.07
LIMA1-210ENST00000552045 PRAMEF1O95521 474 aa8.39□□□□□ -1.07
LIMA1-210ENST00000552045 BMP3P12645 472 aa8.39□□□□□ -1.07
LIMA1-210ENST00000552045 MAP4P27816 1152 aaKnown RBP8.39□□□□□ -1.07
LIMA1-210ENST00000552045 RXRBP28702 533 aa8.39□□□□□ -1.07
LIMA1-210ENST00000552045 IREB2P48200 963 aaKnown RBP8.39□□□□□ -1.07
LIMA1-210ENST00000552045 NRG1Q02297 640 aaPredicted RBP8.39□□□□□ -1.07
LIMA1-210ENST00000552045 SEPT7Q16181 437 aaKnown RBP8.39□□□□□ -1.07
LIMA1-210ENST00000552045 DPY19L1Q2PZI1 675 aa8.39□□□□□ -1.07
LIMA1-210ENST00000552045 DENND5AQ6IQ26 1287 aa8.39□□□□□ -1.07
LIMA1-210ENST00000552045 NECAB2Q7Z6G3 386 aa8.39□□□□□ -1.07
LIMA1-210ENST00000552045 RAVER1Q8IY67 606 aaKnown RBP8.39□□□□□ -1.07
LIMA1-210ENST00000552045 DTWD2Q8NBA8 298 aa8.39□□□□□ -1.07
LIMA1-210ENST00000552045 KREMEN2Q8NCW0 462 aa8.39□□□□□ -1.07
LIMA1-210ENST00000552045 WDR66Q8TBY9 1149 aa8.39□□□□□ -1.07
LIMA1-210ENST00000552045 DCAF4Q8WV16 495 aa8.39□□□□□ -1.07
LIMA1-210ENST00000552045 MYRFLQ96LU7 910 aa8.39□□□□□ -1.07
LIMA1-210ENST00000552045 Q96M66 194 aa8.39□□□□□ -1.07
LIMA1-210ENST00000552045 MINPP1Q9UNW1 487 aa8.39□□□□□ -1.07
LIMA1-210ENST00000552045 FAM95CA0A1B0GW59 222 aa8.38□□□□□ -1.07
LIMA1-210ENST00000552045 AQP7O14520 342 aa8.38□□□□□ -1.07
LIMA1-210ENST00000552045 LEFTY1O75610 366 aa8.38□□□□□ -1.07
LIMA1-210ENST00000552045 CRTAMO95727 393 aa8.38□□□□□ -1.07
LIMA1-210ENST00000552045 POU4F1Q01851 419 aa8.38□□□□□ -1.07
LIMA1-210ENST00000552045 SCRN1Q12765 414 aa8.38□□□□□ -1.07
LIMA1-210ENST00000552045 TTF1Q15361 905 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-210ENST00000552045 CFAP100Q494V2 611 aa8.38□□□□□ -1.07
LIMA1-210ENST00000552045 RNF219Q5W0B1 726 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-210ENST00000552045 LHFPL2Q6ZUX7 228 aa8.38□□□□□ -1.07
LIMA1-210ENST00000552045 UBE2R2Q712K3 238 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-210ENST00000552045 B4E1Z4 1266 aa8.37□□□□□ -1.07
LIMA1-210ENST00000552045 RNF225M0QZC1 329 aaPredicted RBP8.37□□□□□ -1.07
LIMA1-210ENST00000552045 MEIS1O00470 390 aa8.37□□□□□ -1.07
LIMA1-210ENST00000552045 GPR39O43194 453 aa8.37□□□□□ -1.07
LIMA1-210ENST00000552045 BRINP1O60477 761 aa8.37□□□□□ -1.07
LIMA1-210ENST00000552045 KATNA1O75449 491 aa8.37□□□□□ -1.07
LIMA1-210ENST00000552045 GSNP06396 782 aa8.37□□□□□ -1.07
LIMA1-210ENST00000552045 KIR3DL1P43629 444 aa8.37□□□□□ -1.07
LIMA1-210ENST00000552045 EPHB1P54762 984 aa8.37□□□□□ -1.07
LIMA1-210ENST00000552045 NMIQ13287 307 aaPredicted RBP8.37□□□□□ -1.07
LIMA1-210ENST00000552045 STAT4Q14765 748 aa8.37□□□□□ -1.07
LIMA1-210ENST00000552045 SFRP5Q5T4F7 317 aa8.37□□□□□ -1.07
LIMA1-210ENST00000552045 CDCA2Q69YH5 1023 aaPredicted RBP8.37□□□□□ -1.07
LIMA1-210ENST00000552045 COPS5Q92905 334 aa8.37□□□□□ -1.07
LIMA1-210ENST00000552045 UTP4Q969X6 686 aaKnown RBP8.37□□□□□ -1.07
LIMA1-210ENST00000552045 NACC1Q96RE7 527 aa8.37□□□□□ -1.07
LIMA1-210ENST00000552045 MCMBPQ9BTE3 642 aa8.37□□□□□ -1.07
LIMA1-210ENST00000552045 ASPSCR1Q9BZE9 553 aa8.37□□□□□ -1.07
LIMA1-210ENST00000552045 ASCC2Q9H1I8 757 aaPredicted RBP8.37□□□□□ -1.07
LIMA1-210ENST00000552045 PRDM5Q9NQX1 630 aaPredicted RBP8.37□□□□□ -1.07
LIMA1-210ENST00000552045 SLC52A1Q9NWF4 448 aa8.37□□□□□ -1.07
LIMA1-210ENST00000552045 SLC5A4Q9NY91 659 aa8.37□□□□□ -1.07
LIMA1-210ENST00000552045 PCDHA9Q9Y5H5 950 aa8.37□□□□□ -1.07
LIMA1-210ENST00000552045 ST14Q9Y5Y6 855 aa8.37□□□□□ -1.07
LIMA1-210ENST00000552045 CBX7O95931 251 aa8.36□□□□□ -1.07
LIMA1-210ENST00000552045 CTSKP43235 329 aa8.36□□□□□ -1.07
LIMA1-210ENST00000552045 NFKBIBQ15653 356 aa8.36□□□□□ -1.07
LIMA1-210ENST00000552045 CWF19L1Q69YN2 538 aaKnown RBP8.36□□□□□ -1.07
LIMA1-210ENST00000552045 ZCCHC8Q6NZY4 707 aaKnown RBP8.36□□□□□ -1.07
LIMA1-210ENST00000552045 KCNT2Q6UVM3 1135 aa8.36□□□□□ -1.07
LIMA1-210ENST00000552045 FAM20CQ8IXL6 584 aa8.36□□□□□ -1.07
LIMA1-210ENST00000552045 DZIP1LQ8IYY4 767 aaKnown RBP8.36□□□□□ -1.07
LIMA1-210ENST00000552045 ARMC10Q8N2F6 343 aa8.36□□□□□ -1.07
LIMA1-210ENST00000552045 GIMAP7Q8NHV1 300 aa8.36□□□□□ -1.07
LIMA1-210ENST00000552045 RNF112Q9ULX5 631 aa8.36□□□□□ -1.07
LIMA1-210ENST00000552045 STXBP3O00186 592 aa8.35□□□□□ -1.07
LIMA1-210ENST00000552045 APPP05067 770 aa8.35□□□□□ -1.07
LIMA1-210ENST00000552045 THBDP07204 575 aa8.35□□□□□ -1.07
LIMA1-210ENST00000552045 NAT1P18440 290 aa8.35□□□□□ -1.07
LIMA1-210ENST00000552045 GUCY1A3Q02108 690 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms