RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 MYOCDQ8IZQ8 938 aa18.1■□□□□ 0.49
CUX1-213ENST00000549414 NUP58Q9BVL2 599 aa18.1■□□□□ 0.49
CUX1-213ENST00000549414 PICK1Q9NRD5 415 aa18.1■□□□□ 0.49
CUX1-213ENST00000549414 ADGRB2O60241 1585 aa18.1■□□□□ 0.49
CUX1-213ENST00000549414 GOLGA6L10A0A0M3HER8 536 aa18.1■□□□□ 0.49
CUX1-213ENST00000549414 H7C1D1 291 aa18.1■□□□□ 0.49
CUX1-213ENST00000549414 PTPREP23469 700 aa18.1■□□□□ 0.49
CUX1-213ENST00000549414 SLC9C1Q4G0N8 1177 aa18.1■□□□□ 0.49
CUX1-213ENST00000549414 RNF187Q5TA31 235 aaPredicted RBP18.09■□□□□ 0.49
CUX1-213ENST00000549414 KIF20BQ96Q89 1820 aa18.09■□□□□ 0.49
CUX1-213ENST00000549414 FAM196BA6NMK8 535 aa18.09■□□□□ 0.49
CUX1-213ENST00000549414 B4DLN1 442 aa18.09■□□□□ 0.49
CUX1-213ENST00000549414 ANTXR2P58335 489 aa18.09■□□□□ 0.49
CUX1-213ENST00000549414 UTP14CQ5TAP6 766 aaKnown RBP18.09■□□□□ 0.49
CUX1-213ENST00000549414 IFIH1Q9BYX4 1025 aaKnown RBP18.09■□□□□ 0.49
CUX1-213ENST00000549414 CALCOCO1Q9P1Z2 691 aa18.09■□□□□ 0.49
CUX1-213ENST00000549414 TRAPPC10P48553 1259 aa18.09■□□□□ 0.49
CUX1-213ENST00000549414 UBE2SQ16763 222 aa18.09■□□□□ 0.49
CUX1-213ENST00000549414 CCDC84Q86UT8 332 aaPredicted RBP18.09■□□□□ 0.49
CUX1-213ENST00000549414 KLHL30Q0D2K2 578 aa18.08■□□□□ 0.49
CUX1-213ENST00000549414 ITPK1Q13572 414 aa18.08■□□□□ 0.49
CUX1-213ENST00000549414 ZNF772Q68DY9 489 aaPredicted RBP18.08■□□□□ 0.49
CUX1-213ENST00000549414 FBXO11Q86XK2 927 aa18.08■□□□□ 0.49
CUX1-213ENST00000549414 ZNF34Q8IZ26 560 aa18.08■□□□□ 0.49
CUX1-213ENST00000549414 PAGE5Q96GU1 130 aa18.08■□□□□ 0.49
CUX1-213ENST00000549414 ALDH8A1Q9H2A2 487 aaPredicted RBP18.08■□□□□ 0.49
CUX1-213ENST00000549414 KIAA1024Q9UPX6 916 aa18.08■□□□□ 0.49
CUX1-213ENST00000549414 ERCC5P28715 1186 aaPredicted RBP18.08■□□□□ 0.48
CUX1-213ENST00000549414 ASIC2Q16515 512 aa18.08■□□□□ 0.48
CUX1-213ENST00000549414 RESP18Q5W5W9 173 aa18.08■□□□□ 0.48
CUX1-213ENST00000549414 PLA2G12BQ9BX93 195 aa18.08■□□□□ 0.48
CUX1-213ENST00000549414 EXOC3O60645 756 aa18.08■□□□□ 0.48
CUX1-213ENST00000549414 GAS7O60861 476 aa18.08■□□□□ 0.48
CUX1-213ENST00000549414 CDC25BP30305 580 aa18.08■□□□□ 0.48
CUX1-213ENST00000549414 RBL2Q08999 1139 aa18.08■□□□□ 0.48
CUX1-213ENST00000549414 GALNT17Q6IS24 598 aa18.08■□□□□ 0.48
CUX1-213ENST00000549414 DPH6Q7L8W6 267 aa18.08■□□□□ 0.48
CUX1-213ENST00000549414 USP37Q86T82 979 aa18.08■□□□□ 0.48
CUX1-213ENST00000549414 GINS2Q9Y248 185 aa18.08■□□□□ 0.48
CUX1-213ENST00000549414 FAM205CA6NFA0 338 aa18.08■□□□□ 0.48
CUX1-213ENST00000549414 DNM2P50570 870 aa18.08■□□□□ 0.48
CUX1-213ENST00000549414 VAV2P52735 878 aa18.08■□□□□ 0.48
CUX1-213ENST00000549414 ABCB5Q2M3G0 1257 aa18.08■□□□□ 0.48
CUX1-213ENST00000549414 NT5C3AQ9H0P0 336 aa18.08■□□□□ 0.48
CUX1-213ENST00000549414 CTDNEP1O95476 244 aa18.07■□□□□ 0.48
CUX1-213ENST00000549414 FAM26FQ5R3K3 315 aa18.07■□□□□ 0.48
CUX1-213ENST00000549414 TAOK3Q9H2K8 898 aa18.07■□□□□ 0.48
CUX1-213ENST00000549414 GDAQ9Y2T3 454 aa18.07■□□□□ 0.48
CUX1-213ENST00000549414 SMIM23A6NLE4 172 aa18.07■□□□□ 0.48
CUX1-213ENST00000549414 TTLL1O95922 423 aa18.07■□□□□ 0.48
CUX1-213ENST00000549414 ALX1Q15699 326 aa18.07■□□□□ 0.48
CUX1-213ENST00000549414 SHC4Q6S5L8 630 aa18.07■□□□□ 0.48
CUX1-213ENST00000549414 CSRNP1Q96S65 589 aa18.07■□□□□ 0.48
CUX1-213ENST00000549414 TUBGCP2Q9BSJ2 902 aa18.07■□□□□ 0.48
CUX1-213ENST00000549414 AFF2P51816 1311 aa18.07■□□□□ 0.48
CUX1-213ENST00000549414 EEF2P13639 858 aaKnown RBP18.07■□□□□ 0.48
CUX1-213ENST00000549414 SNAP25P60880 206 aa18.07■□□□□ 0.48
CUX1-213ENST00000549414 TTC16Q8NEE8 873 aa18.07■□□□□ 0.48
CUX1-213ENST00000549414 TMEM47Q9BQJ4 181 aa18.07■□□□□ 0.48
CUX1-213ENST00000549414 RSPH14Q9UHP6 348 aa18.07■□□□□ 0.48
CUX1-213ENST00000549414 STX10O60499 249 aa18.06■□□□□ 0.48
CUX1-213ENST00000549414 MMP10P09238 476 aa18.06■□□□□ 0.48
CUX1-213ENST00000549414 PABPC4Q13310 644 aaKnown RBP eCLIP18.06■□□□□ 0.48
CUX1-213ENST00000549414 BIRC3Q13489 604 aa18.06■□□□□ 0.48
CUX1-213ENST00000549414 TICAM2Q86XR7 235 aa18.06■□□□□ 0.48
CUX1-213ENST00000549414 CD209Q9NNX6 404 aa18.06■□□□□ 0.48
CUX1-213ENST00000549414 SORBS3O60504 671 aa18.06■□□□□ 0.48
CUX1-213ENST00000549414 CAMTA2O94983 1202 aa18.06■□□□□ 0.48
CUX1-213ENST00000549414 ALAS1P13196 640 aa18.06■□□□□ 0.48
CUX1-213ENST00000549414 FDPSP14324 419 aaKnown RBP18.06■□□□□ 0.48
CUX1-213ENST00000549414 CYP2J2P51589 502 aa18.06■□□□□ 0.48
CUX1-213ENST00000549414 FLAD1Q8NFF5 587 aa18.06■□□□□ 0.48
CUX1-213ENST00000549414 ENOX1Q8TC92 643 aaKnown RBP18.06■□□□□ 0.48
CUX1-213ENST00000549414 LMBR1Q8WVP7 490 aa18.06■□□□□ 0.48
CUX1-213ENST00000549414 CNOT6LQ96LI5 555 aaKnown RBP18.06■□□□□ 0.48
CUX1-213ENST00000549414 LSM14BQ9BX40 385 aaKnown RBP18.06■□□□□ 0.48
CUX1-213ENST00000549414 TSGA10Q9BZW7 698 aa18.06■□□□□ 0.48
CUX1-213ENST00000549414 PANK4Q9NVE7 773 aa18.06■□□□□ 0.48
CUX1-213ENST00000549414 PRR29P0C7W0 189 aa18.06■□□□□ 0.48
CUX1-213ENST00000549414 ARHGAP44Q17R89 818 aa18.06■□□□□ 0.48
CUX1-213ENST00000549414 EPB41L4AQ9HCS5 686 aaPredicted RBP18.06■□□□□ 0.48
CUX1-213ENST00000549414 AK9Q5TCS8 1911 aa18.06■□□□□ 0.48
CUX1-213ENST00000549414 PLCG1P19174 1290 aa18.06■□□□□ 0.48
CUX1-213ENST00000549414 HDXQ7Z353 690 aa18.06■□□□□ 0.48
CUX1-213ENST00000549414 EPN1Q9Y6I3 576 aaPredicted RBP18.06■□□□□ 0.48
CUX1-213ENST00000549414 TLDC2A0PJX2 215 aa18.05■□□□□ 0.48
CUX1-213ENST00000549414 PSDA5PKW4 1024 aaPredicted RBP18.05■□□□□ 0.48
CUX1-213ENST00000549414 RAD17O75943 681 aa18.05■□□□□ 0.48
CUX1-213ENST00000549414 SGMS1Q86VZ5 419 aa18.05■□□□□ 0.48
CUX1-213ENST00000549414 DGKHQ86XP1 1220 aa18.05■□□□□ 0.48
CUX1-213ENST00000549414 NCOA3Q9Y6Q9 1424 aa18.05■□□□□ 0.48
CUX1-213ENST00000549414 CALUO43852 315 aaPredicted RBP18.05■□□□□ 0.48
CUX1-213ENST00000549414 NFIXQ14938 502 aa18.05■□□□□ 0.48
CUX1-213ENST00000549414 LARP4BQ92615 738 aaKnown RBP18.05■□□□□ 0.48
CUX1-213ENST00000549414 NOX5Q96PH1 765 aa18.05■□□□□ 0.48
CUX1-213ENST00000549414 SYNCQ9H7C4 482 aa18.05■□□□□ 0.48
CUX1-213ENST00000549414 ABCC12Q96J65 1359 aa18.05■□□□□ 0.48
CUX1-213ENST00000549414 SOWAHDA6NJG2 315 aa18.05■□□□□ 0.48
CUX1-213ENST00000549414 ENC1O14682 589 aa18.05■□□□□ 0.48
CUX1-213ENST00000549414 ATP2C2O75185 946 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms