RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 SALL1Q9NSC2 1324 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 CYP2D6P10635 497 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 RPL13P26373 211 aaKnown RBP6.43□□□□□ -1.38
VPS50-220ENST00000544910 UTP14CQ5TAP6 766 aaKnown RBP6.43□□□□□ -1.38
VPS50-220ENST00000544910 NCAPH2Q6IBW4 605 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 LRRC47Q8N1G4 583 aaKnown RBP6.43□□□□□ -1.38
VPS50-220ENST00000544910 SH3RF3Q8TEJ3 882 aaPredicted RBP6.43□□□□□ -1.38
VPS50-220ENST00000544910 CNOT6LQ96LI5 555 aaKnown RBP6.43□□□□□ -1.38
VPS50-220ENST00000544910 NOX5Q96PH1 765 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 PHF20Q9BVI0 1012 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 SENP2Q9HC62 589 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 GOPCQ9HD26 462 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 USP40Q9NVE5 1235 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 DDX25Q9UHL0 483 aaKnown RBP6.43□□□□□ -1.38
VPS50-220ENST00000544910 MRC1P22897 1456 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 ORC4O43929 436 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 POTEJP0CG39 1038 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 KRT13P13646 458 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 GRM4Q14833 912 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 ASPRV1Q53RT3 343 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 GBP6Q6ZN66 633 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 MICALL1Q8N3F8 863 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 SWAP70Q9UH65 585 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 TUBE1Q9UJT0 475 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 KAT6BQ8WYB5 2073 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 A0A1B0GUA9 196 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 B4DLN1 442 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 ATP8B1O43520 1251 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 NMT2O60551 498 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 MFAP3LO75121 409 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 NTSR2O95665 410 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 GTF2IP78347 998 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 IFFO1Q0D2I5 559 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 CUL4BQ13620 913 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 DCAF17Q5H9S7 520 aaPredicted RBP6.43□□□□□ -1.38
VPS50-220ENST00000544910 TYW1BQ6NUM6 668 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 SRGAP1Q7Z6B7 1085 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 RABGGTAQ92696 567 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 RPGRIP1Q96KN7 1286 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 MAP3K14Q99558 947 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 NUCKS1Q9H1E3 243 aaKnown RBP6.43□□□□□ -1.38
VPS50-220ENST00000544910 DISC1Q9NRI5 854 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 TSKSQ9UJT2 592 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 USP17L3A6NCW0 530 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 USP17L4A6NCW7 530 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 A6NNZ2 444 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 PPEF1O14829 653 aaPredicted RBP6.43□□□□□ -1.38
VPS50-220ENST00000544910 FOXN1O15353 648 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 TUBB8Q3ZCM7 444 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 KMT5BQ4FZB7 885 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 SFMBT2Q5VUG0 894 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 USP17L1Q7RTZ2 530 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 SPATA24Q86W54 205 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 P2RX5Q93086 422 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 DCP1AQ9NPI6 582 aaPredicted RBP6.43□□□□□ -1.38
VPS50-220ENST00000544910 SAMM50Q9Y512 469 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 SAR1BQ9Y6B6 198 aa6.43□□□□□ -1.38
VPS50-220ENST00000544910 ARFGEF2Q9Y6D5 1785 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 KCNJ6P48051 423 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 RAPGEF1Q13905 1077 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 SLC9C1Q4G0N8 1177 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 DGKHQ86XP1 1220 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 LSM14BQ9BX40 385 aaKnown RBP6.42□□□□□ -1.38
VPS50-220ENST00000544910 HAUS4Q9H6D7 363 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 PANK4Q9NVE7 773 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 TBC1D7Q9P0N9 293 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 CPSF2Q9P2I0 782 aaKnown RBP6.42□□□□□ -1.38
VPS50-220ENST00000544910 NARFQ9UHQ1 456 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.42□□□□□ -1.38
VPS50-220ENST00000544910 RPS6KA4O75676 772 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 ALDH1B1P30837 517 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 TNNC1P63316 161 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 KRT31Q15323 416 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 RBM26Q5T8P6 1007 aaKnown RBP6.42□□□□□ -1.38
VPS50-220ENST00000544910 CCDC84Q86UT8 332 aaPredicted RBP6.42□□□□□ -1.38
VPS50-220ENST00000544910 SLFN12Q8IYM2 578 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 MYOCDQ8IZQ8 938 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 AFAP1L1Q8TED9 768 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 PPM1EQ8WY54 764 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 CELF1Q92879 486 aaKnown RBP6.42□□□□□ -1.38
VPS50-220ENST00000544910 PIGSQ96S52 555 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 IFIH1Q9BYX4 1025 aaKnown RBP6.42□□□□□ -1.38
VPS50-220ENST00000544910 CDC23Q9UJX2 597 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 SPATA31A1Q5TZJ5 1347 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 PRPHP41219 470 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 SLC1A4P43007 532 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 VAV2P52735 878 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 SF3B2Q13435 895 aaKnown RBP6.42□□□□□ -1.38
VPS50-220ENST00000544910 PRPF4BQ13523 1007 aaKnown RBP6.42□□□□□ -1.38
VPS50-220ENST00000544910 SLC35F6Q8N357 371 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 RSRC1Q96IZ7 334 aaKnown RBP6.42□□□□□ -1.38
VPS50-220ENST00000544910 FAM84BQ96KN1 310 aaPredicted RBP6.42□□□□□ -1.38
VPS50-220ENST00000544910 BCCIPQ9P287 314 aaKnown RBP eCLIP6.42□□□□□ -1.38
VPS50-220ENST00000544910 EPN1Q9Y6I3 576 aaPredicted RBP6.42□□□□□ -1.38
VPS50-220ENST00000544910 RIC1Q4ADV7 1423 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 TCRBV5S4A2TA0A5A2 114 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 SEC31AO94979 1220 aaKnown RBP6.42□□□□□ -1.38
VPS50-220ENST00000544910 KCNQ4P56696 695 aa6.42□□□□□ -1.38
VPS50-220ENST00000544910 ATP2C1P98194 919 aaPredicted RBP6.42□□□□□ -1.38
VPS50-220ENST00000544910 FBXO38Q6PIJ6 1188 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms