RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 JMJD4Q9H9V9 463 aa14.13□□□□□ -0.15
DDX55-210ENST00000543016 FAM217BQ9NTX9 383 aaPredicted RBP14.13□□□□□ -0.15
DDX55-210ENST00000543016 CPA4Q9UI42 421 aa14.13□□□□□ -0.15
DDX55-210ENST00000543016 ZNF214Q9UL59 606 aaPredicted RBP14.13□□□□□ -0.15
DDX55-210ENST00000543016 PNMA6FA0A0J9YX94 578 aa14.12□□□□□ -0.15
DDX55-210ENST00000543016 ZBTB5O15062 677 aa14.12□□□□□ -0.15
DDX55-210ENST00000543016 CNMDO75829 334 aa14.12□□□□□ -0.15
DDX55-210ENST00000543016 IFNAR1P17181 557 aa14.12□□□□□ -0.15
DDX55-210ENST00000543016 RXRAP19793 462 aa14.12□□□□□ -0.15
DDX55-210ENST00000543016 MAPK4P31152 587 aa14.12□□□□□ -0.15
DDX55-210ENST00000543016 TMEM132BQ14DG7 1078 aa14.12□□□□□ -0.15
DDX55-210ENST00000543016 TEX2Q8IWB9 1127 aa14.12□□□□□ -0.15
DDX55-210ENST00000543016 CCAR1Q8IX12 1150 aaKnown RBP14.12□□□□□ -0.15
DDX55-210ENST00000543016 CCDC144CPQ8IYA2 1237 aa14.12□□□□□ -0.15
DDX55-210ENST00000543016 SRBD1Q8N5C6 995 aaKnown RBP14.12□□□□□ -0.15
DDX55-210ENST00000543016 CHST13Q8NET6 341 aa14.12□□□□□ -0.15
DDX55-210ENST00000543016 TXNRD2Q9NNW7 524 aa14.12□□□□□ -0.15
DDX55-210ENST00000543016 BTBD7Q9P203 1132 aa14.12□□□□□ -0.15
DDX55-210ENST00000543016 SEC63Q9UGP8 760 aaKnown RBP14.12□□□□□ -0.15
DDX55-210ENST00000543016 FBXO40Q9UH90 709 aa14.12□□□□□ -0.15
DDX55-210ENST00000543016 RLFQ13129 1914 aa14.11□□□□□ -0.15
DDX55-210ENST00000543016 hCG_1984214I3L0E3 225 aa14.11□□□□□ -0.15
DDX55-210ENST00000543016 CYTH3O43739 400 aa14.11□□□□□ -0.15
DDX55-210ENST00000543016 STRNO43815 780 aa14.11□□□□□ -0.15
DDX55-210ENST00000543016 HSPA1AP0DMV8 641 aaKnown RBP14.11□□□□□ -0.15
DDX55-210ENST00000543016 HSPA1BP0DMV9 641 aaKnown RBP14.11□□□□□ -0.15
DDX55-210ENST00000543016 CDC27P30260 824 aa14.11□□□□□ -0.15
DDX55-210ENST00000543016 ADD1P35611 737 aaKnown RBP14.11□□□□□ -0.15
DDX55-210ENST00000543016 AKAP17AQ02040 695 aaKnown RBP14.11□□□□□ -0.15
DDX55-210ENST00000543016 CDC37Q16543 378 aaPredicted RBP14.11□□□□□ -0.15
DDX55-210ENST00000543016 ME3Q16798 604 aa14.11□□□□□ -0.15
DDX55-210ENST00000543016 POTEEQ6S8J3 1075 aa14.11□□□□□ -0.15
DDX55-210ENST00000543016 TRIM22Q8IYM9 498 aa14.11□□□□□ -0.15
DDX55-210ENST00000543016 ZNF713Q8N859 430 aaPredicted RBP14.11□□□□□ -0.15
DDX55-210ENST00000543016 AMNQ9BXJ7 453 aa14.11□□□□□ -0.15
DDX55-210ENST00000543016 RNF26Q9BY78 433 aaPredicted RBP14.11□□□□□ -0.15
DDX55-210ENST00000543016 R3HDMLQ9H3Y0 253 aa14.11□□□□□ -0.15
DDX55-210ENST00000543016 VAT1LQ9HCJ6 419 aa14.11□□□□□ -0.15
DDX55-210ENST00000543016 PRPF3O43395 683 aaKnown RBP14.1□□□□□ -0.15
DDX55-210ENST00000543016 PLEKHA8P1O95397 391 aa14.1□□□□□ -0.15
DDX55-210ENST00000543016 HOXD10P28358 340 aa14.1□□□□□ -0.15
DDX55-210ENST00000543016 FCGRTP55899 365 aa14.1□□□□□ -0.15
DDX55-210ENST00000543016 CCT2P78371 535 aaKnown RBP14.1□□□□□ -0.15
DDX55-210ENST00000543016 LACTBP83111 547 aaPredicted RBP14.1□□□□□ -0.15
DDX55-210ENST00000543016 FUT2Q10981 343 aa14.1□□□□□ -0.15
DDX55-210ENST00000543016 PLS1Q14651 629 aa14.1□□□□□ -0.15
DDX55-210ENST00000543016 NTRK3Q16288 839 aa14.1□□□□□ -0.15
DDX55-210ENST00000543016 QRICH1Q2TAL8 776 aa14.1□□□□□ -0.15
DDX55-210ENST00000543016 Q3C1V9 767 aa14.1□□□□□ -0.15
DDX55-210ENST00000543016 SNRNP48Q6IEG0 339 aaKnown RBP14.1□□□□□ -0.15
DDX55-210ENST00000543016 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.1□□□□□ -0.15
DDX55-210ENST00000543016 FBXO11Q86XK2 927 aa14.1□□□□□ -0.15
DDX55-210ENST00000543016 RAB11FIP4Q86YS3 637 aa14.1□□□□□ -0.15
DDX55-210ENST00000543016 ABRAQ8N0Z2 381 aa14.1□□□□□ -0.15
DDX55-210ENST00000543016 CPXCR1Q8N123 301 aa14.1□□□□□ -0.15
DDX55-210ENST00000543016 FAM177A1Q8N128 213 aaPredicted RBP14.1□□□□□ -0.15
DDX55-210ENST00000543016 SAMD3Q8N6K7 520 aa14.1□□□□□ -0.15
DDX55-210ENST00000543016 GTF3C6Q969F1 213 aa14.1□□□□□ -0.15
DDX55-210ENST00000543016 SNX21Q969T3 373 aa14.1□□□□□ -0.15
DDX55-210ENST00000543016 LLPHQ9BRT6 129 aaKnown RBP14.1□□□□□ -0.15
DDX55-210ENST00000543016 MOV10L1Q9BXT6 1211 aaKnown RBP14.1□□□□□ -0.15
DDX55-210ENST00000543016 CCPG1Q9ULG6 757 aa14.1□□□□□ -0.15
DDX55-210ENST00000543016 ZNF536O15090 1300 aa14.1□□□□□ -0.15
DDX55-210ENST00000543016 ABCB11O95342 1321 aa14.1□□□□□ -0.15
DDX55-210ENST00000543016 PARP14Q460N5 1801 aa14.09□□□□□ -0.15
DDX55-210ENST00000543016 PRMT2P55345 433 aa14.09□□□□□ -0.15
DDX55-210ENST00000543016 SCRN1Q12765 414 aa14.09□□□□□ -0.15
DDX55-210ENST00000543016 CCDC174Q6PII3 467 aa14.09□□□□□ -0.15
DDX55-210ENST00000543016 NBPF11Q86T75 865 aa14.09□□□□□ -0.15
DDX55-210ENST00000543016 RGS22Q8NE09 1264 aa14.09□□□□□ -0.15
DDX55-210ENST00000543016 ZNF296Q8WUU4 475 aaPredicted RBP14.09□□□□□ -0.15
DDX55-210ENST00000543016 COA7Q96BR5 231 aa14.09□□□□□ -0.15
DDX55-210ENST00000543016 PIGSQ96S52 555 aa14.09□□□□□ -0.15
DDX55-210ENST00000543016 LARP6Q9BRS8 491 aaKnown RBP14.09□□□□□ -0.15
DDX55-210ENST00000543016 CPVLQ9H3G5 476 aa14.09□□□□□ -0.15
DDX55-210ENST00000543016 CWC22Q9HCG8 908 aaKnown RBP14.09□□□□□ -0.15
DDX55-210ENST00000543016 RAVER2Q9HCJ3 691 aaKnown RBP14.09□□□□□ -0.15
DDX55-210ENST00000543016 MRPL11Q9Y3B7 192 aaKnown RBP14.09□□□□□ -0.15
DDX55-210ENST00000543016 A0A0G2JMZ2 1700 aa14.09□□□□□ -0.15
DDX55-210ENST00000543016 CNTNAP5Q8WYK1 1306 aa14.09□□□□□ -0.15
DDX55-210ENST00000543016 FOXN1O15353 648 aa14.08□□□□□ -0.16
DDX55-210ENST00000543016 HSPA8P11142 646 aaKnown RBP14.08□□□□□ -0.16
DDX55-210ENST00000543016 ERCC3P19447 782 aa14.08□□□□□ -0.16
DDX55-210ENST00000543016 SSRP1Q08945 709 aaKnown RBP14.08□□□□□ -0.16
DDX55-210ENST00000543016 STK3Q13188 491 aa14.08□□□□□ -0.16
DDX55-210ENST00000543016 SLC35G1Q2M3R5 365 aa14.08□□□□□ -0.16
DDX55-210ENST00000543016 PLEKHH3Q7Z736 793 aa14.08□□□□□ -0.16
DDX55-210ENST00000543016 NCAPG2Q86XI2 1143 aa14.08□□□□□ -0.16
DDX55-210ENST00000543016 MCF2L2Q86YR7 1114 aa14.08□□□□□ -0.16
DDX55-210ENST00000543016 WASF1Q92558 559 aa14.08□□□□□ -0.16
DDX55-210ENST00000543016 ACAD9Q9H845 621 aa14.08□□□□□ -0.16
DDX55-210ENST00000543016 MAP3K20Q9NYL2 800 aaKnown RBP14.08□□□□□ -0.16
DDX55-210ENST00000543016 IVNS1ABPQ9Y6Y0 642 aa14.08□□□□□ -0.16
DDX55-210ENST00000543016 V9GY48 417 aaPredicted RBP14.08□□□□□ -0.16
DDX55-210ENST00000543016 STK36Q9NRP7 1315 aa14.08□□□□□ -0.16
DDX55-210ENST00000543016 SLC15A5A6NIM6 579 aa14.07□□□□□ -0.16
DDX55-210ENST00000543016 TNPO2O14787 897 aaKnown RBP14.07□□□□□ -0.16
DDX55-210ENST00000543016 DEXIO95424 95 aa14.07□□□□□ -0.16
DDX55-210ENST00000543016 FMNL1O95466 1100 aaPredicted RBP14.07□□□□□ -0.16
DDX55-210ENST00000543016 FCER1AP12319 257 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms