RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 RIOX2Q8IUF8 465 aa20.32■□□□□ 0.84
CLSTN3-210ENST00000540931 ZNF713Q8N859 430 aaPredicted RBP20.32■□□□□ 0.84
CLSTN3-210ENST00000540931 RRP36Q96EU6 259 aaKnown RBP20.32■□□□□ 0.84
CLSTN3-210ENST00000540931 PAGR1Q9BTK6 254 aa20.32■□□□□ 0.84
CLSTN3-210ENST00000540931 SLKQ9H2G2 1235 aaPredicted RBP20.32■□□□□ 0.84
CLSTN3-210ENST00000540931 CWC22Q9HCG8 908 aaKnown RBP20.32■□□□□ 0.84
CLSTN3-210ENST00000540931 GPHNQ9NQX3 736 aaPredicted RBP20.32■□□□□ 0.84
CLSTN3-210ENST00000540931 FBXO28Q9NVF7 368 aa20.32■□□□□ 0.84
CLSTN3-210ENST00000540931 CPA4Q9UI42 421 aa20.32■□□□□ 0.84
CLSTN3-210ENST00000540931 BRPF3Q9ULD4 1205 aa20.32■□□□□ 0.84
CLSTN3-210ENST00000540931 ZBTB5O15062 677 aa20.31■□□□□ 0.84
CLSTN3-210ENST00000540931 ICAM1P05362 532 aa20.31■□□□□ 0.84
CLSTN3-210ENST00000540931 GOLGA8HP0CJ92 632 aa20.31■□□□□ 0.84
CLSTN3-210ENST00000540931 AKAP17AQ02040 695 aaKnown RBP20.31■□□□□ 0.84
CLSTN3-210ENST00000540931 SAMD1Q6SPF0 538 aaPredicted RBP20.31■□□□□ 0.84
CLSTN3-210ENST00000540931 ADGRF4Q8IZF3 695 aa20.31■□□□□ 0.84
CLSTN3-210ENST00000540931 SAMD3Q8N6K7 520 aa20.31■□□□□ 0.84
CLSTN3-210ENST00000540931 CHST13Q8NET6 341 aa20.31■□□□□ 0.84
CLSTN3-210ENST00000540931 COA7Q96BR5 231 aa20.31■□□□□ 0.84
CLSTN3-210ENST00000540931 IVNS1ABPQ9Y6Y0 642 aa20.31■□□□□ 0.84
CLSTN3-210ENST00000540931 LACTBP83111 547 aaPredicted RBP20.3■□□□□ 0.84
CLSTN3-210ENST00000540931 PLS1Q14651 629 aa20.3■□□□□ 0.84
CLSTN3-210ENST00000540931 TTBK2Q6IQ55 1244 aa20.3■□□□□ 0.84
CLSTN3-210ENST00000540931 TMTC3Q6ZXV5 915 aa20.3■□□□□ 0.84
CLSTN3-210ENST00000540931 TRIM22Q8IYM9 498 aa20.3■□□□□ 0.84
CLSTN3-210ENST00000540931 ABRAQ8N0Z2 381 aa20.3■□□□□ 0.84
CLSTN3-210ENST00000540931 FAM177A1Q8N128 213 aaPredicted RBP20.3■□□□□ 0.84
CLSTN3-210ENST00000540931 SLC5A4Q9NY91 659 aa20.3■□□□□ 0.84
CLSTN3-210ENST00000540931 ZNF214Q9UL59 606 aaPredicted RBP20.3■□□□□ 0.84
CLSTN3-210ENST00000540931 PNMA6FA0A0J9YX94 578 aa20.29■□□□□ 0.84
CLSTN3-210ENST00000540931 PFKFB2O60825 505 aa20.29■□□□□ 0.84
CLSTN3-210ENST00000540931 SLC16A2P36021 539 aa20.29■□□□□ 0.84
CLSTN3-210ENST00000540931 TMEM132BQ14DG7 1078 aa20.29■□□□□ 0.84
CLSTN3-210ENST00000540931 STAG2Q8N3U4 1231 aa20.29■□□□□ 0.84
CLSTN3-210ENST00000540931 REPS2Q8NFH8 660 aa20.29■□□□□ 0.84
CLSTN3-210ENST00000540931 MTMR8Q96EF0 704 aa20.29■□□□□ 0.84
CLSTN3-210ENST00000540931 MYL10Q9BUA6 226 aa20.29■□□□□ 0.84
CLSTN3-210ENST00000540931 AMNQ9BXJ7 453 aa20.29■□□□□ 0.84
CLSTN3-210ENST00000540931 UBA5Q9GZZ9 404 aa20.29■□□□□ 0.84
CLSTN3-210ENST00000540931 JMJD4Q9H9V9 463 aa20.29■□□□□ 0.84
CLSTN3-210ENST00000540931 PARP14Q460N5 1801 aa20.29■□□□□ 0.84
CLSTN3-210ENST00000540931 RLFQ13129 1914 aa20.29■□□□□ 0.84
CLSTN3-210ENST00000540931 A0A0G2JMZ2 1700 aa20.28■□□□□ 0.84
CLSTN3-210ENST00000540931 IFNAR1P17181 557 aa20.28■□□□□ 0.84
CLSTN3-210ENST00000540931 COL9A3Q14050 684 aaPredicted RBP20.28■□□□□ 0.84
CLSTN3-210ENST00000540931 CDC37Q16543 378 aaPredicted RBP20.28■□□□□ 0.84
CLSTN3-210ENST00000540931 SNRNP48Q6IEG0 339 aaKnown RBP20.28■□□□□ 0.84
CLSTN3-210ENST00000540931 FBXO46Q6PJ61 603 aaPredicted RBP20.28■□□□□ 0.84
CLSTN3-210ENST00000540931 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.28■□□□□ 0.84
CLSTN3-210ENST00000540931 FBXO11Q86XK2 927 aa20.28■□□□□ 0.84
CLSTN3-210ENST00000540931 SOCS4Q8WXH5 440 aa20.28■□□□□ 0.84
CLSTN3-210ENST00000540931 MAP3K20Q9NYL2 800 aaKnown RBP20.28■□□□□ 0.84
CLSTN3-210ENST00000540931 BTBD7Q9P203 1132 aa20.28■□□□□ 0.84
CLSTN3-210ENST00000540931 ABCB11O95342 1321 aa20.27■□□□□ 0.84
CLSTN3-210ENST00000540931 MCF2L2Q86YR7 1114 aa20.27■□□□□ 0.84
CLSTN3-210ENST00000540931 CPXCR1Q8N123 301 aa20.27■□□□□ 0.84
CLSTN3-210ENST00000540931 MOV10L1Q9BXT6 1211 aaKnown RBP20.27■□□□□ 0.84
CLSTN3-210ENST00000540931 RNF26Q9BY78 433 aaPredicted RBP20.27■□□□□ 0.84
CLSTN3-210ENST00000540931 GLT8D2Q9H1C3 349 aa20.27■□□□□ 0.84
CLSTN3-210ENST00000540931 R3HDMLQ9H3Y0 253 aa20.27■□□□□ 0.84
CLSTN3-210ENST00000540931 TXNRD2Q9NNW7 524 aa20.27■□□□□ 0.84
CLSTN3-210ENST00000540931 CCPG1Q9ULG6 757 aa20.27■□□□□ 0.84
CLSTN3-210ENST00000540931 MRPL11Q9Y3B7 192 aaKnown RBP20.27■□□□□ 0.84
CLSTN3-210ENST00000540931 TNPO2O14787 897 aaKnown RBP20.26■□□□□ 0.83
CLSTN3-210ENST00000540931 CNMDO75829 334 aa20.26■□□□□ 0.83
CLSTN3-210ENST00000540931 FMNL1O95466 1100 aaPredicted RBP20.26■□□□□ 0.83
CLSTN3-210ENST00000540931 PSMC4P43686 418 aa20.26■□□□□ 0.83
CLSTN3-210ENST00000540931 PLEKHH3Q7Z736 793 aa20.26■□□□□ 0.83
CLSTN3-210ENST00000540931 NCAPG2Q86XI2 1143 aa20.26■□□□□ 0.83
CLSTN3-210ENST00000540931 CCDC144CPQ8IYA2 1237 aa20.26■□□□□ 0.83
CLSTN3-210ENST00000540931 RGS22Q8NE09 1264 aa20.26■□□□□ 0.83
CLSTN3-210ENST00000540931 CCDC12Q8WUD4 166 aaPredicted RBP20.26■□□□□ 0.83
CLSTN3-210ENST00000540931 WASF1Q92558 559 aa20.26■□□□□ 0.83
CLSTN3-210ENST00000540931 ACAD9Q9H845 621 aa20.26■□□□□ 0.83
CLSTN3-210ENST00000540931 VAT1LQ9HCJ6 419 aa20.26■□□□□ 0.83
CLSTN3-210ENST00000540931 TPCN1Q9ULQ1 816 aa20.26■□□□□ 0.83
CLSTN3-210ENST00000540931 PFASO15067 1338 aa20.26■□□□□ 0.83
CLSTN3-210ENST00000540931 PRPF3O43395 683 aaKnown RBP20.25■□□□□ 0.83
CLSTN3-210ENST00000540931 FCER1AP12319 257 aa20.25■□□□□ 0.83
CLSTN3-210ENST00000540931 RXRAP19793 462 aa20.25■□□□□ 0.83
CLSTN3-210ENST00000540931 KCTD2Q14681 263 aa20.25■□□□□ 0.83
CLSTN3-210ENST00000540931 Q3C1V9 767 aa20.25■□□□□ 0.83
CLSTN3-210ENST00000540931 TRMT44Q8IYL2 757 aaKnown RBP20.25■□□□□ 0.83
CLSTN3-210ENST00000540931 SRBD1Q8N5C6 995 aaKnown RBP20.25■□□□□ 0.83
CLSTN3-210ENST00000540931 LLPHQ9BRT6 129 aaKnown RBP20.25■□□□□ 0.83
CLSTN3-210ENST00000540931 EFCC1Q9HA90 598 aa20.25■□□□□ 0.83
CLSTN3-210ENST00000540931 RAVER2Q9HCJ3 691 aaKnown RBP20.25■□□□□ 0.83
CLSTN3-210ENST00000540931 KIF3AQ9Y496 699 aa20.25■□□□□ 0.83
CLSTN3-210ENST00000540931 SLC15A5A6NIM6 579 aa20.24■□□□□ 0.83
CLSTN3-210ENST00000540931 XBP1P17861 261 aa20.24■□□□□ 0.83
CLSTN3-210ENST00000540931 ERCC3P19447 782 aa20.24■□□□□ 0.83
CLSTN3-210ENST00000540931 ADD1P35611 737 aaKnown RBP20.24■□□□□ 0.83
CLSTN3-210ENST00000540931 SSRP1Q08945 709 aaKnown RBP20.24■□□□□ 0.83
CLSTN3-210ENST00000540931 QRICH1Q2TAL8 776 aa20.24■□□□□ 0.83
CLSTN3-210ENST00000540931 CCDC174Q6PII3 467 aa20.24■□□□□ 0.83
CLSTN3-210ENST00000540931 RASGRP2Q7LDG7 609 aa20.24■□□□□ 0.83
CLSTN3-210ENST00000540931 GTF3C6Q969F1 213 aa20.24■□□□□ 0.83
CLSTN3-210ENST00000540931 TRERF1Q96PN7 1200 aa20.24■□□□□ 0.83
CLSTN3-210ENST00000540931 NUDT12Q9BQG2 462 aa20.24■□□□□ 0.83
CLSTN3-210ENST00000540931 PCDHA1Q9Y5I3 950 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms