RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 TEX2Q8IWB9 1127 aa12.23□□□□□ -0.45
VPS33A-204ENST00000540669 FAM43AQ8N2R8 423 aa12.23□□□□□ -0.45
VPS33A-204ENST00000540669 ZNF713Q8N859 430 aaPredicted RBP12.23□□□□□ -0.45
VPS33A-204ENST00000540669 PRPF38AQ8NAV1 312 aaKnown RBP12.23□□□□□ -0.45
VPS33A-204ENST00000540669 CHURC1Q8WUH1 139 aa12.23□□□□□ -0.45
VPS33A-204ENST00000540669 IPO9Q96P70 1041 aaKnown RBP12.23□□□□□ -0.45
VPS33A-204ENST00000540669 ZIC5Q96T25 663 aa12.23□□□□□ -0.45
VPS33A-204ENST00000540669 CFHR5Q9BXR6 569 aa12.23□□□□□ -0.45
VPS33A-204ENST00000540669 UBA5Q9GZZ9 404 aa12.23□□□□□ -0.45
VPS33A-204ENST00000540669 ASCC2Q9H1I8 757 aaPredicted RBP12.23□□□□□ -0.45
VPS33A-204ENST00000540669 GPCPD1Q9NPB8 672 aa12.23□□□□□ -0.45
VPS33A-204ENST00000540669 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.23□□□□□ -0.45
VPS33A-204ENST00000540669 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.23□□□□□ -0.45
VPS33A-204ENST00000540669 ESYT2A0FGR8 921 aa12.22□□□□□ -0.45
VPS33A-204ENST00000540669 VWA5AO00534 786 aa12.22□□□□□ -0.45
VPS33A-204ENST00000540669 OPLAHO14841 1288 aa12.22□□□□□ -0.45
VPS33A-204ENST00000540669 CNMDO75829 334 aa12.22□□□□□ -0.45
VPS33A-204ENST00000540669 HSPA1AP0DMV8 641 aaKnown RBP12.22□□□□□ -0.45
VPS33A-204ENST00000540669 HSPA1BP0DMV9 641 aaKnown RBP12.22□□□□□ -0.45
VPS33A-204ENST00000540669 SCG2P13521 617 aa12.22□□□□□ -0.45
VPS33A-204ENST00000540669 CDC37Q16543 378 aaPredicted RBP12.22□□□□□ -0.45
VPS33A-204ENST00000540669 QRICH1Q2TAL8 776 aa12.22□□□□□ -0.45
VPS33A-204ENST00000540669 WWC2Q6AWC2 1192 aa12.22□□□□□ -0.45
VPS33A-204ENST00000540669 OTUD7BQ6GQQ9 843 aa12.22□□□□□ -0.45
VPS33A-204ENST00000540669 CPLX2Q6PUV4 134 aaKnown RBP12.22□□□□□ -0.45
VPS33A-204ENST00000540669 ATG4CQ96DT6 458 aa12.22□□□□□ -0.45
VPS33A-204ENST00000540669 PIGSQ96S52 555 aa12.22□□□□□ -0.45
VPS33A-204ENST00000540669 MORF4L1Q9UBU8 362 aa12.22□□□□□ -0.45
VPS33A-204ENST00000540669 PLXNB2O15031 1838 aa12.22□□□□□ -0.45
VPS33A-204ENST00000540669 HTTP42858 3142 aa12.22□□□□□ -0.45
VPS33A-204ENST00000540669 MGAMO43451 1857 aa12.21□□□□□ -0.45
VPS33A-204ENST00000540669 PNMA6FA0A0J9YX94 578 aa12.21□□□□□ -0.45
VPS33A-204ENST00000540669 STXBP3O00186 592 aa12.21□□□□□ -0.45
VPS33A-204ENST00000540669 CPLX1O14810 134 aa12.21□□□□□ -0.45
VPS33A-204ENST00000540669 DTNBO60941 627 aa12.21□□□□□ -0.45
VPS33A-204ENST00000540669 FLOT1O75955 427 aa12.21□□□□□ -0.45
VPS33A-204ENST00000540669 GJB2P29033 226 aa12.21□□□□□ -0.45
VPS33A-204ENST00000540669 INHBEP58166 350 aa12.21□□□□□ -0.45
VPS33A-204ENST00000540669 HERVK_113P62684 666 aa12.21□□□□□ -0.45
VPS33A-204ENST00000540669 PABPC4Q13310 644 aaKnown RBP eCLIP12.21□□□□□ -0.45
VPS33A-204ENST00000540669 COG2Q14746 738 aa12.21□□□□□ -0.45
VPS33A-204ENST00000540669 MB21D1Q8N884 522 aa12.21□□□□□ -0.45
VPS33A-204ENST00000540669 AIFM3Q96NN9 605 aa12.21□□□□□ -0.45
VPS33A-204ENST00000540669 SLC26A6Q9BXS9 759 aa12.21□□□□□ -0.45
VPS33A-204ENST00000540669 TANGO6Q9C0B7 1094 aa12.21□□□□□ -0.45
VPS33A-204ENST00000540669 SH3GLB2Q9NR46 395 aa12.21□□□□□ -0.45
VPS33A-204ENST00000540669 BARHL2Q9NY43 387 aa12.21□□□□□ -0.45
VPS33A-204ENST00000540669 ORC3Q9UBD5 711 aaPredicted RBP12.21□□□□□ -0.45
VPS33A-204ENST00000540669 M0R2N6 131 aa12.2□□□□□ -0.46
VPS33A-204ENST00000540669 ICAM1P05362 532 aa12.2□□□□□ -0.46
VPS33A-204ENST00000540669 BCRP11274 1271 aa12.2□□□□□ -0.46
VPS33A-204ENST00000540669 CTCFP49711 727 aaPredicted RBP12.2□□□□□ -0.46
VPS33A-204ENST00000540669 GADL1Q6ZQY3 521 aa12.2□□□□□ -0.46
VPS33A-204ENST00000540669 IFNL1Q8IU54 200 aa12.2□□□□□ -0.46
VPS33A-204ENST00000540669 TRIM22Q8IYM9 498 aa12.2□□□□□ -0.46
VPS33A-204ENST00000540669 DAGLBQ8NCG7 672 aa12.2□□□□□ -0.46
VPS33A-204ENST00000540669 FBXO18Q8NFZ0 1043 aa12.2□□□□□ -0.46
VPS33A-204ENST00000540669 GTF3C2Q8WUA4 911 aaPredicted RBP12.2□□□□□ -0.46
VPS33A-204ENST00000540669 RRP36Q96EU6 259 aaKnown RBP12.2□□□□□ -0.46
VPS33A-204ENST00000540669 MAF1Q9H063 256 aa12.2□□□□□ -0.46
VPS33A-204ENST00000540669 NAP1L2Q9ULW6 460 aaPredicted RBP12.2□□□□□ -0.46
VPS33A-204ENST00000540669 MTMR7Q9Y216 660 aa12.2□□□□□ -0.46
VPS33A-204ENST00000540669 V9GY48 417 aaPredicted RBP12.2□□□□□ -0.46
VPS33A-204ENST00000540669 ZSWIM8A7E2V4 1837 aa12.19□□□□□ -0.46
VPS33A-204ENST00000540669 hCG_1642624A0A1W2PR95 340 aa12.19□□□□□ -0.46
VPS33A-204ENST00000540669 PDHXO00330 501 aa12.19□□□□□ -0.46
VPS33A-204ENST00000540669 ALDH1A1P00352 501 aa12.19□□□□□ -0.46
VPS33A-204ENST00000540669 SLC4A3P48751 1232 aa12.19□□□□□ -0.46
VPS33A-204ENST00000540669 KIF23Q02241 960 aaPredicted RBP12.19□□□□□ -0.46
VPS33A-204ENST00000540669 SSRP1Q08945 709 aaKnown RBP12.19□□□□□ -0.46
VPS33A-204ENST00000540669 TMEM132BQ14DG7 1078 aa12.19□□□□□ -0.46
VPS33A-204ENST00000540669 TNFRSF25Q93038 417 aa12.19□□□□□ -0.46
VPS33A-204ENST00000540669 P2RX7Q99572 595 aaKnown RBP12.19□□□□□ -0.46
VPS33A-204ENST00000540669 PHF20Q9BVI0 1012 aa12.19□□□□□ -0.46
VPS33A-204ENST00000540669 ZMYND12Q9H0C1 365 aa12.19□□□□□ -0.46
VPS33A-204ENST00000540669 CWC22Q9HCG8 908 aaKnown RBP12.19□□□□□ -0.46
VPS33A-204ENST00000540669 TXNRD2Q9NNW7 524 aa12.19□□□□□ -0.46
VPS33A-204ENST00000540669 BTBD7Q9P203 1132 aa12.19□□□□□ -0.46
VPS33A-204ENST00000540669 RBPJLQ9UBG7 517 aa12.19□□□□□ -0.46
VPS33A-204ENST00000540669 PNMA3Q9UL41 463 aa12.19□□□□□ -0.46
VPS33A-204ENST00000540669 PNMA2Q9UL42 364 aa12.19□□□□□ -0.46
VPS33A-204ENST00000540669 SMC3Q9UQE7 1217 aa12.19□□□□□ -0.46
VPS33A-204ENST00000540669 RABGAP1Q9Y3P9 1069 aa12.19□□□□□ -0.46
VPS33A-204ENST00000540669 FRMPD4Q14CM0 1322 aa12.18□□□□□ -0.46
VPS33A-204ENST00000540669 AOC2O75106 756 aa12.18□□□□□ -0.46
VPS33A-204ENST00000540669 PPFIA3O75145 1194 aa12.18□□□□□ -0.46
VPS33A-204ENST00000540669 SYT1P21579 422 aa12.18□□□□□ -0.46
VPS33A-204ENST00000540669 MKRN3Q13064 507 aaKnown RBP12.18□□□□□ -0.46
VPS33A-204ENST00000540669 CCDC82Q8N4S0 544 aa12.18□□□□□ -0.46
VPS33A-204ENST00000540669 CLEC4DQ8WXI8 215 aa12.18□□□□□ -0.46
VPS33A-204ENST00000540669 WASF1Q92558 559 aa12.18□□□□□ -0.46
VPS33A-204ENST00000540669 GPKOWQ92917 476 aaPredicted RBP eCLIP12.18□□□□□ -0.46
VPS33A-204ENST00000540669 KIFC2Q96AC6 838 aa12.18□□□□□ -0.46
VPS33A-204ENST00000540669 DDX11Q96FC9 970 aa12.18□□□□□ -0.46
VPS33A-204ENST00000540669 PARK7Q99497 189 aaKnown RBP12.18□□□□□ -0.46
VPS33A-204ENST00000540669 ALG1Q9BT22 464 aa12.18□□□□□ -0.46
VPS33A-204ENST00000540669 AMNQ9BXJ7 453 aa12.18□□□□□ -0.46
VPS33A-204ENST00000540669 TEX13BQ9BXU2 312 aa12.18□□□□□ -0.46
VPS33A-204ENST00000540669 GJB4Q9NTQ9 266 aa12.18□□□□□ -0.46
VPS33A-204ENST00000540669 HOXC10Q9NYD6 342 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms