RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 PAK1Q13153 545 aa19.07■□□□□ 0.64
USP28-208ENST00000540438 KCNJ12Q14500 433 aa19.07■□□□□ 0.64
USP28-208ENST00000540438 SLC30A10Q6XR72 485 aa19.07■□□□□ 0.64
USP28-208ENST00000540438 GLIS3Q8NEA6 775 aa19.07■□□□□ 0.64
USP28-208ENST00000540438 PCMTD1Q96MG8 357 aaPredicted RBP19.07■□□□□ 0.64
USP28-208ENST00000540438 DISC1Q9NRI5 854 aa19.07■□□□□ 0.64
USP28-208ENST00000540438 TBC1D7Q9P0N9 293 aa19.07■□□□□ 0.64
USP28-208ENST00000540438 CASQ1P31415 396 aa19.07■□□□□ 0.64
USP28-208ENST00000540438 LRRC41Q15345 812 aa19.07■□□□□ 0.64
USP28-208ENST00000540438 MTERF4Q7Z6M4 381 aaKnown RBP19.07■□□□□ 0.64
USP28-208ENST00000540438 GSDMAQ96QA5 445 aa19.07■□□□□ 0.64
USP28-208ENST00000540438 NUDT12Q9BQG2 462 aa19.07■□□□□ 0.64
USP28-208ENST00000540438 MTA3Q9BTC8 594 aa19.07■□□□□ 0.64
USP28-208ENST00000540438 IDEP14735 1019 aa19.06■□□□□ 0.64
USP28-208ENST00000540438 ZSCAN29Q8IWY8 852 aaPredicted RBP19.06■□□□□ 0.64
USP28-208ENST00000540438 ERO1AQ96HE7 468 aa19.06■□□□□ 0.64
USP28-208ENST00000540438 TRIM47Q96LD4 638 aa19.06■□□□□ 0.64
USP28-208ENST00000540438 BARHL2Q9NY43 387 aa19.06■□□□□ 0.64
USP28-208ENST00000540438 PARP3Q9Y6F1 533 aa19.06■□□□□ 0.64
USP28-208ENST00000540438 TXLNAP40222 546 aa19.06■□□□□ 0.64
USP28-208ENST00000540438 RCAN1P53805 252 aa19.06■□□□□ 0.64
USP28-208ENST00000540438 ASIC1P78348 528 aa19.06■□□□□ 0.64
USP28-208ENST00000540438 CCDC96Q2M329 555 aa19.06■□□□□ 0.64
USP28-208ENST00000540438 ZNF569Q5MCW4 686 aa19.06■□□□□ 0.64
USP28-208ENST00000540438 QTRT2Q9H974 415 aaKnown RBP19.06■□□□□ 0.64
USP28-208ENST00000540438 A0A1B0GUL6 1792 aa19.06■□□□□ 0.64
USP28-208ENST00000540438 CALML3P27482 149 aa19.06■□□□□ 0.64
USP28-208ENST00000540438 STK4Q13043 487 aa19.06■□□□□ 0.64
USP28-208ENST00000540438 UBXN4Q92575 508 aa19.06■□□□□ 0.64
USP28-208ENST00000540438 CCDC34Q96HJ3 373 aa19.06■□□□□ 0.64
USP28-208ENST00000540438 USP40Q9NVE5 1235 aa19.06■□□□□ 0.64
USP28-208ENST00000540438 SEC63Q9UGP8 760 aaKnown RBP19.06■□□□□ 0.64
USP28-208ENST00000540438 PALM3A6NDB9 673 aaPredicted RBP19.05■□□□□ 0.64
USP28-208ENST00000540438 B4DLN1 442 aa19.05■□□□□ 0.64
USP28-208ENST00000540438 SLC37A4O43826 429 aa19.05■□□□□ 0.64
USP28-208ENST00000540438 ERCC5P28715 1186 aaPredicted RBP19.05■□□□□ 0.64
USP28-208ENST00000540438 KCTD19Q17RG1 926 aaPredicted RBP19.05■□□□□ 0.64
USP28-208ENST00000540438 SOGA3Q5TF21 947 aa19.05■□□□□ 0.64
USP28-208ENST00000540438 LAMB2P55268 1798 aa19.05■□□□□ 0.64
USP28-208ENST00000540438 ENC1O14682 589 aa19.05■□□□□ 0.64
USP28-208ENST00000540438 LDHCP07864 332 aa19.05■□□□□ 0.64
USP28-208ENST00000540438 KRT9P35527 623 aa19.04■□□□□ 0.64
USP28-208ENST00000540438 COPB1P53618 953 aaKnown RBP19.04■□□□□ 0.64
USP28-208ENST00000540438 ERVK-24P63145 666 aa19.04■□□□□ 0.64
USP28-208ENST00000540438 GSTO1P78417 241 aa19.04■□□□□ 0.64
USP28-208ENST00000540438 FILIP1LQ4L180 1135 aa19.04■□□□□ 0.64
USP28-208ENST00000540438 CABP7Q86V35 215 aa19.04■□□□□ 0.64
USP28-208ENST00000540438 PROM2Q8N271 834 aa19.04■□□□□ 0.64
USP28-208ENST00000540438 RBM17Q96I25 401 aaKnown RBP19.04■□□□□ 0.64
USP28-208ENST00000540438 WNK3Q9BYP7 1800 aa19.04■□□□□ 0.64
USP28-208ENST00000540438 GTPBP6O43824 516 aaPredicted RBP19.04■□□□□ 0.64
USP28-208ENST00000540438 CLCN6P51797 869 aa19.04■□□□□ 0.64
USP28-208ENST00000540438 PDE4DQ08499 809 aa19.04■□□□□ 0.64
USP28-208ENST00000540438 IRF2BP1Q8IU81 584 aa19.04■□□□□ 0.64
USP28-208ENST00000540438 ZC3H12CQ9C0D7 883 aaKnown RBP19.04■□□□□ 0.64
USP28-208ENST00000540438 ZSCAN12O43309 604 aa19.03■□□□□ 0.64
USP28-208ENST00000540438 CDKAL1Q5VV42 579 aa19.03■□□□□ 0.64
USP28-208ENST00000540438 TRIML1Q8N9V2 468 aa19.03■□□□□ 0.64
USP28-208ENST00000540438 RRP36Q96EU6 259 aaKnown RBP19.03■□□□□ 0.64
USP28-208ENST00000540438 BTAF1O14981 1849 aa19.03■□□□□ 0.64
USP28-208ENST00000540438 MCM6Q14566 821 aa19.03■□□□□ 0.64
USP28-208ENST00000540438 LTBP4Q8N2S1 1624 aa19.03■□□□□ 0.64
USP28-208ENST00000540438 GPR75-ASB3A0A0A6YYF3 556 aa19.03■□□□□ 0.64
USP28-208ENST00000540438 USP17L15C9J2P7 530 aa19.03■□□□□ 0.64
USP28-208ENST00000540438 USP17L13C9JLJ4 530 aa19.03■□□□□ 0.64
USP28-208ENST00000540438 USP17L11C9JVI0 530 aa19.03■□□□□ 0.64
USP28-208ENST00000540438 USP17L18D6R9N7 530 aa19.03■□□□□ 0.64
USP28-208ENST00000540438 USP17L22D6RA61 530 aa19.03■□□□□ 0.64
USP28-208ENST00000540438 USP17L17D6RBQ6 530 aa19.03■□□□□ 0.64
USP28-208ENST00000540438 USP17L19D6RCP7 530 aa19.03■□□□□ 0.64
USP28-208ENST00000540438 USP17L20D6RJB6 530 aa19.03■□□□□ 0.64
USP28-208ENST00000540438 USP17L24Q0WX57 530 aa19.03■□□□□ 0.64
USP28-208ENST00000540438 TCP11X2Q5H9J9 407 aa19.03■□□□□ 0.64
USP28-208ENST00000540438 USP17L6PQ6QN14 398 aa19.03■□□□□ 0.64
USP28-208ENST00000540438 CGNQ9P2M7 1197 aaKnown RBP19.03■□□□□ 0.64
USP28-208ENST00000540438 GUCA1BQ9UMX6 200 aa19.03■□□□□ 0.64
USP28-208ENST00000540438 COL22A1Q8NFW1 1626 aaPredicted RBP19.03■□□□□ 0.64
USP28-208ENST00000540438 MARCH6O60337 910 aa19.02■□□□□ 0.64
USP28-208ENST00000540438 STX10O60499 249 aa19.02■□□□□ 0.64
USP28-208ENST00000540438 ZSCAN20P17040 1043 aaPredicted RBP19.02■□□□□ 0.64
USP28-208ENST00000540438 ENOX2Q16206 610 aaKnown RBP19.02■□□□□ 0.64
USP28-208ENST00000540438 CCDC155Q8N6L0 562 aa19.02■□□□□ 0.64
USP28-208ENST00000540438 AGPAT5Q9NUQ2 364 aa19.02■□□□□ 0.64
USP28-208ENST00000540438 SCN7AQ01118 1682 aa19.02■□□□□ 0.64
USP28-208ENST00000540438 USP17L10C9JJH3 530 aa19.02■□□□□ 0.63
USP28-208ENST00000540438 POLR3GO15318 223 aaPredicted RBP19.02■□□□□ 0.63
USP28-208ENST00000540438 MFAP3LO75121 409 aa19.02■□□□□ 0.63
USP28-208ENST00000540438 PCP11498 1178 aaKnown RBP19.02■□□□□ 0.63
USP28-208ENST00000540438 CCDC93Q567U6 631 aa19.02■□□□□ 0.63
USP28-208ENST00000540438 ADGRG1Q9Y653 693 aa19.02■□□□□ 0.63
USP28-208ENST00000540438 PPEF1O14829 653 aaPredicted RBP19.01■□□□□ 0.63
USP28-208ENST00000540438 GDF11O95390 407 aa19.01■□□□□ 0.63
USP28-208ENST00000540438 NONOQ15233 471 aaKnown RBP eCLIP19.01■□□□□ 0.63
USP28-208ENST00000540438 C16orf86Q6ZW13 317 aa19.01■□□□□ 0.63
USP28-208ENST00000540438 ZHX3Q9H4I2 956 aa19.01■□□□□ 0.63
USP28-208ENST00000540438 ZCCHC17Q9NP64 241 aaKnown RBP19.01■□□□□ 0.63
USP28-208ENST00000540438 COL5A3P25940 1745 aaPredicted RBP19.01■□□□□ 0.63
USP28-208ENST00000540438 TTC26A0AVF1 554 aa19.01■□□□□ 0.63
USP28-208ENST00000540438 M0R2N6 131 aa19.01■□□□□ 0.63
USP28-208ENST00000540438 PDHBP11177 359 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms