RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 BCAS4Q8TDM0 211 aa12.58□□□□□ -0.4
SYNE1-237ENST00000539504 DNAJC7Q99615 494 aa12.58□□□□□ -0.4
SYNE1-237ENST00000539504 LRWD1Q9UFC0 647 aa12.58□□□□□ -0.4
SYNE1-237ENST00000539504 TARSL2A2RTX5 802 aaKnown RBP12.57□□□□□ -0.4
SYNE1-237ENST00000539504 TACC1O75410 805 aa12.57□□□□□ -0.4
SYNE1-237ENST00000539504 EFCAB13Q8IY85 973 aa12.57□□□□□ -0.4
SYNE1-237ENST00000539504 NOC4LQ9BVI4 516 aaKnown RBP12.57□□□□□ -0.4
SYNE1-237ENST00000539504 CXCR5P32302 372 aa12.57□□□□□ -0.4
SYNE1-237ENST00000539504 LONP1P36776 959 aaKnown RBP12.57□□□□□ -0.4
SYNE1-237ENST00000539504 GYG1P46976 350 aa12.57□□□□□ -0.4
SYNE1-237ENST00000539504 GNGT1P63211 74 aa12.57□□□□□ -0.4
SYNE1-237ENST00000539504 EZH2Q15910 746 aaKnown RBP12.57□□□□□ -0.4
SYNE1-237ENST00000539504 DISC1Q9NRI5 854 aa12.57□□□□□ -0.4
SYNE1-237ENST00000539504 SPATA31A3Q5VYP0 1347 aa12.57□□□□□ -0.4
SYNE1-237ENST00000539504 A0A1W2PQC6 194 aa12.57□□□□□ -0.4
SYNE1-237ENST00000539504 NUTM2BA6NNL0 878 aaPredicted RBP12.57□□□□□ -0.4
SYNE1-237ENST00000539504 NUTM2EB1AL46 878 aaPredicted RBP12.57□□□□□ -0.4
SYNE1-237ENST00000539504 ERCC3P19447 782 aa12.57□□□□□ -0.4
SYNE1-237ENST00000539504 IRX3P78415 501 aaPredicted RBP12.57□□□□□ -0.4
SYNE1-237ENST00000539504 TYW1BQ6NUM6 668 aa12.57□□□□□ -0.4
SYNE1-237ENST00000539504 TADA2BQ86TJ2 420 aa12.57□□□□□ -0.4
SYNE1-237ENST00000539504 CAPS2Q9BXY5 557 aa12.57□□□□□ -0.4
SYNE1-237ENST00000539504 EHD4Q9H223 541 aa12.57□□□□□ -0.4
SYNE1-237ENST00000539504 TSPY2A6NKD2 308 aa12.56□□□□□ -0.4
SYNE1-237ENST00000539504 AKR1B10O60218 316 aa12.56□□□□□ -0.4
SYNE1-237ENST00000539504 TRAPPC10P48553 1259 aa12.56□□□□□ -0.4
SYNE1-237ENST00000539504 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.56□□□□□ -0.4
SYNE1-237ENST00000539504 ANKRD18AQ8IVF6 992 aa12.56□□□□□ -0.4
SYNE1-237ENST00000539504 TNFRSF25Q93038 417 aa12.56□□□□□ -0.4
SYNE1-237ENST00000539504 FAM107BQ9H098 131 aa12.56□□□□□ -0.4
SYNE1-237ENST00000539504 FAM184BQ9ULE4 1060 aa12.56□□□□□ -0.4
SYNE1-237ENST00000539504 ASIC1P78348 528 aa12.56□□□□□ -0.4
SYNE1-237ENST00000539504 PDE4DQ08499 809 aa12.56□□□□□ -0.4
SYNE1-237ENST00000539504 NPY5RQ15761 445 aa12.56□□□□□ -0.4
SYNE1-237ENST00000539504 BLIDQ8IZY5 108 aa12.56□□□□□ -0.4
SYNE1-237ENST00000539504 THAP9Q9H5L6 903 aa12.56□□□□□ -0.4
SYNE1-237ENST00000539504 CNTNAP5Q8WYK1 1306 aa12.56□□□□□ -0.4
SYNE1-237ENST00000539504 A0A087WUV0 522 aaPredicted RBP12.56□□□□□ -0.4
SYNE1-237ENST00000539504 ADAMTS3O15072 1205 aa12.56□□□□□ -0.4
SYNE1-237ENST00000539504 ZBED6P86452 979 aa12.56□□□□□ -0.4
SYNE1-237ENST00000539504 CCDC152Q4G0S7 254 aa12.56□□□□□ -0.4
SYNE1-237ENST00000539504 C2CD5Q86YS7 1000 aa12.56□□□□□ -0.4
SYNE1-237ENST00000539504 ANKRD13CQ8N6S4 541 aa12.56□□□□□ -0.4
SYNE1-237ENST00000539504 CNOT6LQ96LI5 555 aaKnown RBP12.56□□□□□ -0.4
SYNE1-237ENST00000539504 LRRC1Q9BTT6 524 aa12.56□□□□□ -0.4
SYNE1-237ENST00000539504 NUP58Q9BVL2 599 aa12.56□□□□□ -0.4
SYNE1-237ENST00000539504 IFIH1Q9BYX4 1025 aaKnown RBP12.56□□□□□ -0.4
SYNE1-237ENST00000539504 MLXIPQ9HAP2 919 aa12.56□□□□□ -0.4
SYNE1-237ENST00000539504 SMARCAL1Q9NZC9 954 aa12.56□□□□□ -0.4
SYNE1-237ENST00000539504 SAMM50Q9Y512 469 aa12.56□□□□□ -0.4
SYNE1-237ENST00000539504 KCPQ6ZWJ8 1503 aa12.56□□□□□ -0.4
SYNE1-237ENST00000539504 DDAH1O94760 285 aa12.55□□□□□ -0.4
SYNE1-237ENST00000539504 ERLIN2O94905 339 aa12.55□□□□□ -0.4
SYNE1-237ENST00000539504 CALML3P27482 149 aa12.55□□□□□ -0.4
SYNE1-237ENST00000539504 PAFAH1B1P43034 410 aa12.55□□□□□ -0.4
SYNE1-237ENST00000539504 IRAK1P51617 712 aa12.55□□□□□ -0.4
SYNE1-237ENST00000539504 CHRNDQ07001 517 aa12.55□□□□□ -0.4
SYNE1-237ENST00000539504 CADPS2Q86UW7 1296 aa12.55□□□□□ -0.4
SYNE1-237ENST00000539504 HDAC7Q8WUI4 952 aa12.55□□□□□ -0.4
SYNE1-237ENST00000539504 RRP36Q96EU6 259 aaKnown RBP12.55□□□□□ -0.4
SYNE1-237ENST00000539504 MMRN2Q9H8L6 949 aa12.55□□□□□ -0.4
SYNE1-237ENST00000539504 FAM207AQ9NSI2 230 aaPredicted RBP12.55□□□□□ -0.4
SYNE1-237ENST00000539504 MYH8P13535 1937 aa12.55□□□□□ -0.4
SYNE1-237ENST00000539504 PDS5AQ29RF7 1337 aaKnown RBP12.55□□□□□ -0.4
SYNE1-237ENST00000539504 MOCS3O95396 460 aa12.55□□□□□ -0.4
SYNE1-237ENST00000539504 PPFIA1Q13136 1202 aa12.55□□□□□ -0.4
SYNE1-237ENST00000539504 SUSD4Q5VX71 490 aa12.55□□□□□ -0.4
SYNE1-237ENST00000539504 CARD10Q9BWT7 1032 aa12.55□□□□□ -0.4
SYNE1-237ENST00000539504 DMGDHQ9UI17 866 aaKnown RBP12.55□□□□□ -0.4
SYNE1-237ENST00000539504 HSF2BPO75031 334 aa12.55□□□□□ -0.4
SYNE1-237ENST00000539504 PLEKP08567 350 aaPredicted RBP12.55□□□□□ -0.4
SYNE1-237ENST00000539504 SRGNP10124 158 aa12.55□□□□□ -0.4
SYNE1-237ENST00000539504 VAV2P52735 878 aa12.55□□□□□ -0.4
SYNE1-237ENST00000539504 INF2Q27J81 1249 aa12.55□□□□□ -0.4
SYNE1-237ENST00000539504 AMOTL1Q8IY63 956 aa12.55□□□□□ -0.4
SYNE1-237ENST00000539504 CCDC170Q8IYT3 715 aa12.55□□□□□ -0.4
SYNE1-237ENST00000539504 ZNF507Q8TCN5 953 aa12.55□□□□□ -0.4
SYNE1-237ENST00000539504 AKAP11Q9UKA4 1901 aa12.55□□□□□ -0.4
SYNE1-237ENST00000539504 ANO9A1A5B4 782 aa12.54□□□□□ -0.4
SYNE1-237ENST00000539504 H0YHG0 523 aa12.54□□□□□ -0.4
SYNE1-237ENST00000539504 AGPSO00116 658 aa12.54□□□□□ -0.4
SYNE1-237ENST00000539504 OPA1O60313 960 aa12.54□□□□□ -0.4
SYNE1-237ENST00000539504 ZEB2O60315 1214 aa12.54□□□□□ -0.4
SYNE1-237ENST00000539504 KIF5BP33176 963 aa12.54□□□□□ -0.4
SYNE1-237ENST00000539504 ARL6IP4Q66PJ3 421 aaKnown RBP12.54□□□□□ -0.4
SYNE1-237ENST00000539504 FAM114A1Q8IWE2 563 aa12.54□□□□□ -0.4
SYNE1-237ENST00000539504 TRIM58Q8NG06 486 aa12.54□□□□□ -0.4
SYNE1-237ENST00000539504 ALS2CR12Q96Q35 445 aa12.54□□□□□ -0.4
SYNE1-237ENST00000539504 FAM169AQ9Y6X4 670 aa12.54□□□□□ -0.4
SYNE1-237ENST00000539504 MYH7P12883 1935 aa12.54□□□□□ -0.4
SYNE1-237ENST00000539504 CYP19A1P11511 503 aaPredicted RBP12.54□□□□□ -0.4
SYNE1-237ENST00000539504 EVX2Q03828 476 aa12.54□□□□□ -0.4
SYNE1-237ENST00000539504 KCTD16Q68DU8 428 aa12.54□□□□□ -0.4
SYNE1-237ENST00000539504 HEATR3Q7Z4Q2 680 aa12.54□□□□□ -0.4
SYNE1-237ENST00000539504 TSGA10Q9BZW7 698 aa12.54□□□□□ -0.4
SYNE1-237ENST00000539504 POLD4Q9HCU8 107 aa12.54□□□□□ -0.4
SYNE1-237ENST00000539504 EHD2Q9NZN4 543 aa12.54□□□□□ -0.4
SYNE1-237ENST00000539504 LAMB4A4D0S4 1761 aa12.54□□□□□ -0.4
SYNE1-237ENST00000539504 EXOC5O00471 708 aa12.54□□□□□ -0.4
SYNE1-237ENST00000539504 ATP1A2P50993 1020 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms