RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 RC3H2Q9HBD1 1191 aaKnown RBP5.84□□□□□ -1.47
CD44-233ENST00000531141 PRDM7Q9NQW5 492 aa5.84□□□□□ -1.47
CD44-233ENST00000531141 LRP2BPQ9P2M1 347 aa5.84□□□□□ -1.47
CD44-233ENST00000531141 ZNF281Q9Y2X9 895 aa5.84□□□□□ -1.47
CD44-233ENST00000531141 OAS3Q9Y6K5 1087 aaKnown RBP5.84□□□□□ -1.47
CD44-233ENST00000531141 ITGAVP06756 1048 aa5.83□□□□□ -1.48
CD44-233ENST00000531141 RNASE1P07998 156 aaKnown RBP5.83□□□□□ -1.48
CD44-233ENST00000531141 ZGLP1P0C6A0 271 aa5.83□□□□□ -1.48
CD44-233ENST00000531141 RPL10P27635 214 aaKnown RBP5.83□□□□□ -1.48
CD44-233ENST00000531141 NOP2P46087 812 aaKnown RBP5.83□□□□□ -1.48
CD44-233ENST00000531141 MTERF2Q49AM1 385 aa5.83□□□□□ -1.48
CD44-233ENST00000531141 RTP2Q5QGT7 225 aa5.83□□□□□ -1.48
CD44-233ENST00000531141 RCSD1Q6JBY9 416 aa5.83□□□□□ -1.48
CD44-233ENST00000531141 CYP2R1Q6VVX0 501 aa5.83□□□□□ -1.48
CD44-233ENST00000531141 WAPLQ7Z5K2 1190 aa5.83□□□□□ -1.48
CD44-233ENST00000531141 LRRC47Q8N1G4 583 aaKnown RBP5.83□□□□□ -1.48
CD44-233ENST00000531141 LRRN4CLQ8ND94 238 aa5.83□□□□□ -1.48
CD44-233ENST00000531141 FLAD1Q8NFF5 587 aa5.83□□□□□ -1.48
CD44-233ENST00000531141 CDADC1Q9BWV3 514 aa5.83□□□□□ -1.48
CD44-233ENST00000531141 SLC12A9Q9BXP2 914 aa5.83□□□□□ -1.48
CD44-233ENST00000531141 BACE2Q9Y5Z0 518 aa5.83□□□□□ -1.48
CD44-233ENST00000531141 DNAJC25-GNG10A0A024R161 153 aa5.82□□□□□ -1.48
CD44-233ENST00000531141 STXBP3O00186 592 aa5.82□□□□□ -1.48
CD44-233ENST00000531141 AURKAO14965 403 aa5.82□□□□□ -1.48
CD44-233ENST00000531141 KCNH1O95259 989 aa5.82□□□□□ -1.48
CD44-233ENST00000531141 GDNFP39905 211 aa5.82□□□□□ -1.48
CD44-233ENST00000531141 RBM10P98175 930 aaKnown RBP5.82□□□□□ -1.48
CD44-233ENST00000531141 CHRNEQ04844 493 aa5.82□□□□□ -1.48
CD44-233ENST00000531141 BMS1Q14692 1282 aaKnown RBP5.82□□□□□ -1.48
CD44-233ENST00000531141 RALGPS1Q5JS13 557 aa5.82□□□□□ -1.48
CD44-233ENST00000531141 GTF2IRD2BQ6EKJ0 949 aa5.82□□□□□ -1.48
CD44-233ENST00000531141 CBLL1Q75N03 491 aa5.82□□□□□ -1.48
CD44-233ENST00000531141 GTF2IRD2Q86UP8 949 aa5.82□□□□□ -1.48
CD44-233ENST00000531141 KSR1Q8IVT5 923 aa5.82□□□□□ -1.48
CD44-233ENST00000531141 ANKS4BQ8N8V4 417 aa5.82□□□□□ -1.48
CD44-233ENST00000531141 MAP6Q96JE9 813 aa5.82□□□□□ -1.48
CD44-233ENST00000531141 G6PC3Q9BUM1 346 aa5.82□□□□□ -1.48
CD44-233ENST00000531141 GOLGA2P5Q9HBQ8 144 aa5.82□□□□□ -1.48
CD44-233ENST00000531141 ERVK13-1Q9NX77 482 aa5.82□□□□□ -1.48
CD44-233ENST00000531141 GSTM1P09488 218 aa5.81□□□□□ -1.48
CD44-233ENST00000531141 RAC2P15153 192 aa5.81□□□□□ -1.48
CD44-233ENST00000531141 IFNGR1P15260 489 aa5.81□□□□□ -1.48
CD44-233ENST00000531141 SSRP1Q08945 709 aaKnown RBP5.81□□□□□ -1.48
CD44-233ENST00000531141 EEF1DP3Q658K8 133 aa5.81□□□□□ -1.48
CD44-233ENST00000531141 NAT16Q8N8M0 369 aa5.81□□□□□ -1.48
CD44-233ENST00000531141 PDZD8Q8NEN9 1154 aa5.81□□□□□ -1.48
CD44-233ENST00000531141 BTN2A2Q8WVV5 523 aa5.81□□□□□ -1.48
CD44-233ENST00000531141 MRFAP1L1Q96HT8 127 aa5.81□□□□□ -1.48
CD44-233ENST00000531141 NKX2-4Q9H2Z4 354 aa5.81□□□□□ -1.48
CD44-233ENST00000531141 ZSWIM4Q9H7M6 989 aa5.81□□□□□ -1.48
CD44-233ENST00000531141 AP5S1Q9NUS5 200 aa5.81□□□□□ -1.48
CD44-233ENST00000531141 C19orf73Q9NVV2 129 aa5.81□□□□□ -1.48
CD44-233ENST00000531141 TNFRSF10DQ9UBN6 386 aa5.81□□□□□ -1.48
CD44-233ENST00000531141 ADGRE2Q9UHX3 823 aa5.81□□□□□ -1.48
CD44-233ENST00000531141 ZMYM5Q9UJ78 669 aa5.81□□□□□ -1.48
CD44-233ENST00000531141 CDK11AQ9UQ88 783 aaPredicted RBP5.81□□□□□ -1.48
CD44-233ENST00000531141 CTNND2Q9UQB3 1225 aa5.81□□□□□ -1.48
CD44-233ENST00000531141 GPR55Q9Y2T6 319 aaPredicted RBP5.81□□□□□ -1.48
CD44-233ENST00000531141 FITM1A5D6W6 292 aa5.8□□□□□ -1.48
CD44-233ENST00000531141 FAM221BA6H8Z2 402 aa5.8□□□□□ -1.48
CD44-233ENST00000531141 FGF10O15520 208 aaPredicted RBP5.8□□□□□ -1.48
CD44-233ENST00000531141 KIR2DL1P43626 348 aaPredicted RBP5.8□□□□□ -1.48
CD44-233ENST00000531141 KIR2DL2P43627 348 aaPredicted RBP5.8□□□□□ -1.48
CD44-233ENST00000531141 PPP2R2AP63151 447 aa5.8□□□□□ -1.48
CD44-233ENST00000531141 DPY19L1Q2PZI1 675 aa5.8□□□□□ -1.48
CD44-233ENST00000531141 CCDC144BQ3MJ40 725 aa5.8□□□□□ -1.48
CD44-233ENST00000531141 DPH6Q7L8W6 267 aa5.8□□□□□ -1.48
CD44-233ENST00000531141 OXR1Q8N573 874 aa5.8□□□□□ -1.48
CD44-233ENST00000531141 LINC01599Q8WXQ3 324 aa5.8□□□□□ -1.48
CD44-233ENST00000531141 FCRL3Q96P31 734 aaPredicted RBP5.8□□□□□ -1.48
CD44-233ENST00000531141 AARSD1Q9BTE6 412 aaKnown RBP5.8□□□□□ -1.48
CD44-233ENST00000531141 ADAMTS10Q9H324 1103 aa5.8□□□□□ -1.48
CD44-233ENST00000531141 TRBV23OR9-2A0A075B6M9 112 aa5.79□□□□□ -1.48
CD44-233ENST00000531141 A0A1W2PQU0 124 aa5.79□□□□□ -1.48
CD44-233ENST00000531141 TBX1O43435 398 aa5.79□□□□□ -1.48
CD44-233ENST00000531141 VAMP4O75379 141 aa5.79□□□□□ -1.48
CD44-233ENST00000531141 HPXP02790 462 aa5.79□□□□□ -1.48
CD44-233ENST00000531141 SEPHS1P49903 392 aa5.79□□□□□ -1.48
CD44-233ENST00000531141 HK2P52789 917 aa5.79□□□□□ -1.48
CD44-233ENST00000531141 SCRN1Q12765 414 aa5.79□□□□□ -1.48
CD44-233ENST00000531141 HSP90AA2PQ14568 343 aaPredicted RBP5.79□□□□□ -1.48
CD44-233ENST00000531141 NR0B2Q15466 257 aa5.79□□□□□ -1.48
CD44-233ENST00000531141 ZPBP2Q6X784 338 aa5.79□□□□□ -1.48
CD44-233ENST00000531141 SPATC1Q76KD6 591 aa5.79□□□□□ -1.48
CD44-233ENST00000531141 ATG4DQ86TL0 474 aaPredicted RBP5.79□□□□□ -1.48
CD44-233ENST00000531141 HHIPL1Q96JK4 782 aa5.79□□□□□ -1.48
CD44-233ENST00000531141 MCMBPQ9BTE3 642 aa5.79□□□□□ -1.48
CD44-233ENST00000531141 SPATA9Q9BWV2 254 aa5.79□□□□□ -1.48
CD44-233ENST00000531141 LGR4Q9BXB1 951 aa5.79□□□□□ -1.48
CD44-233ENST00000531141 ARHGEF4Q9NR80 690 aa5.79□□□□□ -1.48
CD44-233ENST00000531141 C2orf71A6NGG8 1288 aa5.78□□□□□ -1.48
CD44-233ENST00000531141 BIN1O00499 593 aa5.78□□□□□ -1.48
CD44-233ENST00000531141 USP2O75604 605 aaPredicted RBP5.78□□□□□ -1.48
CD44-233ENST00000531141 CPP00450 1065 aa5.78□□□□□ -1.48
CD44-233ENST00000531141 SCG5P05408 212 aa5.78□□□□□ -1.48
CD44-233ENST00000531141 HOXC12P31275 282 aa5.78□□□□□ -1.48
CD44-233ENST00000531141 AFMP43652 599 aa5.78□□□□□ -1.48
CD44-233ENST00000531141 IRAK1P51617 712 aa5.78□□□□□ -1.48
CD44-233ENST00000531141 GFRA1P56159 465 aa5.78□□□□□ -1.48
CD44-233ENST00000531141 SPPL2CQ8IUH8 684 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms