RNA–Protein interactions for RNA: ENST00000526877.1

SSSCA1-203, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

TSL 3 BASIC

Gene SSSCA1, Length 713 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-203ENST00000526877 SOCS4Q8WXH5 440 aa14.76□□□□□ -0.05
SSSCA1-203ENST00000526877 DEFB118Q96PH6 123 aa14.76□□□□□ -0.05
SSSCA1-203ENST00000526877 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.76□□□□□ -0.05
SSSCA1-203ENST00000526877 SH2D4AQ9H788 454 aa14.76□□□□□ -0.05
SSSCA1-203ENST00000526877 KAT14Q9H8E8 782 aa14.76□□□□□ -0.05
SSSCA1-203ENST00000526877 SENP2Q9HC62 589 aa14.76□□□□□ -0.05
SSSCA1-203ENST00000526877 IL17RBQ9NRM6 502 aa14.76□□□□□ -0.05
SSSCA1-203ENST00000526877 IGKV6D-41A0A0C4DH26 115 aa14.75□□□□□ -0.05
SSSCA1-203ENST00000526877 CAPN2P17655 700 aa14.75□□□□□ -0.05
SSSCA1-203ENST00000526877 PTPREP23469 700 aa14.75□□□□□ -0.05
SSSCA1-203ENST00000526877 METAP2P50579 478 aaKnown RBP eCLIP14.75□□□□□ -0.05
SSSCA1-203ENST00000526877 CCT2P78371 535 aaKnown RBP14.75□□□□□ -0.05
SSSCA1-203ENST00000526877 SCRN1Q12765 414 aa14.75□□□□□ -0.05
SSSCA1-203ENST00000526877 MAP2K5Q13163 448 aa14.75□□□□□ -0.05
SSSCA1-203ENST00000526877 CCL14Q16627 93 aa14.75□□□□□ -0.05
SSSCA1-203ENST00000526877 CPLX2Q6PUV4 134 aaKnown RBP14.75□□□□□ -0.05
SSSCA1-203ENST00000526877 CCAR1Q8IX12 1150 aaKnown RBP14.75□□□□□ -0.05
SSSCA1-203ENST00000526877 ZNF654Q8IZM8 581 aa14.75□□□□□ -0.05
SSSCA1-203ENST00000526877 LLPHQ9BRT6 129 aaKnown RBP14.75□□□□□ -0.05
SSSCA1-203ENST00000526877 TANGO6Q9C0B7 1094 aa14.75□□□□□ -0.05
SSSCA1-203ENST00000526877 ADAMTS5Q9UNA0 930 aa14.75□□□□□ -0.05
SSSCA1-203ENST00000526877 STX8Q9UNK0 236 aa14.75□□□□□ -0.05
SSSCA1-203ENST00000526877 SMC3Q9UQE7 1217 aa14.75□□□□□ -0.05
SSSCA1-203ENST00000526877 MYH4Q9Y623 1939 aa14.74□□□□□ -0.05
SSSCA1-203ENST00000526877 CCDC196A0A1B0GTZ2 297 aa14.74□□□□□ -0.05
SSSCA1-203ENST00000526877 SLC15A5A6NIM6 579 aa14.74□□□□□ -0.05
SSSCA1-203ENST00000526877 GOLGA8AA7E2F4 631 aa14.74□□□□□ -0.05
SSSCA1-203ENST00000526877 CPLX1O14810 134 aa14.74□□□□□ -0.05
SSSCA1-203ENST00000526877 WDR46O15213 610 aaKnown RBP14.74□□□□□ -0.05
SSSCA1-203ENST00000526877 DDAH1O94760 285 aa14.74□□□□□ -0.05
SSSCA1-203ENST00000526877 IGHA2P01877 340 aa14.74□□□□□ -0.05
SSSCA1-203ENST00000526877 TOP1P11387 765 aaKnown RBP14.74□□□□□ -0.05
SSSCA1-203ENST00000526877 RGS2P41220 211 aa14.74□□□□□ -0.05
SSSCA1-203ENST00000526877 PPP2R5BQ15173 497 aa14.74□□□□□ -0.05
SSSCA1-203ENST00000526877 RCSD1Q6JBY9 416 aa14.74□□□□□ -0.05
SSSCA1-203ENST00000526877 MICU3Q86XE3 530 aa14.74□□□□□ -0.05
SSSCA1-203ENST00000526877 CEP95Q96GE4 821 aa14.74□□□□□ -0.05
SSSCA1-203ENST00000526877 MOV10L1Q9BXT6 1211 aaKnown RBP14.74□□□□□ -0.05
SSSCA1-203ENST00000526877 NYAP2Q9P242 653 aa14.74□□□□□ -0.05
SSSCA1-203ENST00000526877 COL11A1P12107 1806 aaPredicted RBP14.73□□□□□ -0.05
SSSCA1-203ENST00000526877 ZNFX1Q9P2E3 1918 aaKnown RBP14.73□□□□□ -0.05
SSSCA1-203ENST00000526877 FLOT1O75955 427 aa14.73□□□□□ -0.05
SSSCA1-203ENST00000526877 TTLL1O95922 423 aa14.73□□□□□ -0.05
SSSCA1-203ENST00000526877 TFRCP02786 760 aaKnown RBP14.73□□□□□ -0.05
SSSCA1-203ENST00000526877 HOXC6P09630 235 aa14.73□□□□□ -0.05
SSSCA1-203ENST00000526877 ATP2B2Q01814 1243 aa14.73□□□□□ -0.05
SSSCA1-203ENST00000526877 CACNB2Q08289 660 aaPredicted RBP14.73□□□□□ -0.05
SSSCA1-203ENST00000526877 GRB14Q14449 540 aa14.73□□□□□ -0.05
SSSCA1-203ENST00000526877 RTN1Q16799 776 aa14.73□□□□□ -0.05
SSSCA1-203ENST00000526877 TRMT44Q8IYL2 757 aaKnown RBP14.73□□□□□ -0.05
SSSCA1-203ENST00000526877 MB21D1Q8N884 522 aa14.73□□□□□ -0.05
SSSCA1-203ENST00000526877 NUP133Q8WUM0 1156 aa14.73□□□□□ -0.05
SSSCA1-203ENST00000526877 ATG4CQ96DT6 458 aa14.73□□□□□ -0.05
SSSCA1-203ENST00000526877 APBA2Q99767 749 aa14.73□□□□□ -0.05
SSSCA1-203ENST00000526877 SPATC1LQ9H0A9 340 aa14.73□□□□□ -0.05
SSSCA1-203ENST00000526877 HMX1Q9NP08 348 aaPredicted RBP14.73□□□□□ -0.05
SSSCA1-203ENST00000526877 FBXO28Q9NVF7 368 aa14.73□□□□□ -0.05
SSSCA1-203ENST00000526877 MTMR4Q9NYA4 1195 aa14.73□□□□□ -0.05
SSSCA1-203ENST00000526877 FLRT1Q9NZU1 646 aa14.73□□□□□ -0.05
SSSCA1-203ENST00000526877 CDKL5O76039 1030 aa14.72□□□□□ -0.05
SSSCA1-203ENST00000526877 FARP2O94887 1054 aaPredicted RBP14.72□□□□□ -0.05
SSSCA1-203ENST00000526877 PRKAR2AP13861 404 aaKnown RBP14.72□□□□□ -0.05
SSSCA1-203ENST00000526877 NOVP48745 357 aa14.72□□□□□ -0.05
SSSCA1-203ENST00000526877 MNX1P50219 401 aaPredicted RBP14.72□□□□□ -0.05
SSSCA1-203ENST00000526877 ST3GAL1Q11201 340 aa14.72□□□□□ -0.05
SSSCA1-203ENST00000526877 RAB11FIP4Q86YS3 637 aa14.72□□□□□ -0.05
SSSCA1-203ENST00000526877 FANCBQ8NB91 859 aa14.72□□□□□ -0.05
SSSCA1-203ENST00000526877 PNMA1Q8ND90 353 aa14.72□□□□□ -0.05
SSSCA1-203ENST00000526877 SHCBP1Q8NEM2 672 aa14.72□□□□□ -0.05
SSSCA1-203ENST00000526877 CTCFLQ8NI51 663 aaPredicted RBP14.72□□□□□ -0.05
SSSCA1-203ENST00000526877 NPLOC4Q8TAT6 608 aa14.72□□□□□ -0.05
SSSCA1-203ENST00000526877 MKL1Q969V6 931 aa14.72□□□□□ -0.05
SSSCA1-203ENST00000526877 TMEM47Q9BQJ4 181 aa14.72□□□□□ -0.05
SSSCA1-203ENST00000526877 NCOA5Q9HCD5 579 aaKnown RBP14.72□□□□□ -0.05
SSSCA1-203ENST00000526877 RBM28Q9NW13 759 aaKnown RBP14.72□□□□□ -0.05
SSSCA1-203ENST00000526877 CLIP2Q9UDT6 1046 aa14.72□□□□□ -0.05
SSSCA1-203ENST00000526877 CIZ1Q9ULV3 898 aaPredicted RBP14.72□□□□□ -0.05
SSSCA1-203ENST00000526877 KIF3AQ9Y496 699 aa14.72□□□□□ -0.05
SSSCA1-203ENST00000526877 NID2Q14112 1375 aa14.72□□□□□ -0.05
SSSCA1-203ENST00000526877 F5H6K3 240 aa14.71□□□□□ -0.05
SSSCA1-203ENST00000526877 STRNO43815 780 aa14.71□□□□□ -0.05
SSSCA1-203ENST00000526877 ERCC3P19447 782 aa14.71□□□□□ -0.05
SSSCA1-203ENST00000526877 RXRAP19793 462 aa14.71□□□□□ -0.05
SSSCA1-203ENST00000526877 KIF5BP33176 963 aa14.71□□□□□ -0.05
SSSCA1-203ENST00000526877 HMGN5P82970 282 aaKnown RBP14.71□□□□□ -0.05
SSSCA1-203ENST00000526877 KLRC3Q07444 240 aa14.71□□□□□ -0.05
SSSCA1-203ENST00000526877 TMEM132BQ14DG7 1078 aa14.71□□□□□ -0.05
SSSCA1-203ENST00000526877 FAM83BQ5T0W9 1011 aa14.71□□□□□ -0.05
SSSCA1-203ENST00000526877 WDR78Q5VTH9 848 aa14.71□□□□□ -0.05
SSSCA1-203ENST00000526877 CCDC144CPQ8IYA2 1237 aa14.71□□□□□ -0.05
SSSCA1-203ENST00000526877 MAP3K14Q99558 947 aa14.71□□□□□ -0.05
SSSCA1-203ENST00000526877 MYL10Q9BUA6 226 aa14.71□□□□□ -0.05
SSSCA1-203ENST00000526877 GOPCQ9HD26 462 aa14.71□□□□□ -0.05
SSSCA1-203ENST00000526877 CHMP5Q9NZZ3 219 aa14.71□□□□□ -0.05
SSSCA1-203ENST00000526877 H0YGN5 161 aa14.7□□□□□ -0.06
SSSCA1-203ENST00000526877 VWA5AO00534 786 aa14.7□□□□□ -0.06
SSSCA1-203ENST00000526877 GJB2P29033 226 aa14.7□□□□□ -0.06
SSSCA1-203ENST00000526877 CCND3P30281 292 aaPredicted RBP14.7□□□□□ -0.06
SSSCA1-203ENST00000526877 TROAPQ12815 778 aa14.7□□□□□ -0.06
SSSCA1-203ENST00000526877 LHX8Q68G74 356 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms