RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 ZCCHC17Q9NP64 241 aaKnown RBP15.91■□□□□ 0.14
CD44-224ENST00000526669 FOXD4L1Q9NU39 408 aa15.91■□□□□ 0.14
CD44-224ENST00000526669 RNF186Q9NXI6 227 aa15.91■□□□□ 0.14
CD44-224ENST00000526669 HOXC10Q9NYD6 342 aa15.91■□□□□ 0.14
CD44-224ENST00000526669 MYPNQ86TC9 1320 aa15.91■□□□□ 0.14
CD44-224ENST00000526669 ADGRA2Q96PE1 1338 aa15.91■□□□□ 0.14
CD44-224ENST00000526669 TBC1D8O95759 1140 aa15.9■□□□□ 0.14
CD44-224ENST00000526669 IFNAR1P17181 557 aa15.9■□□□□ 0.14
CD44-224ENST00000526669 SSRP1Q08945 709 aaKnown RBP15.9■□□□□ 0.14
CD44-224ENST00000526669 FUT2Q10981 343 aa15.9■□□□□ 0.14
CD44-224ENST00000526669 PPP2R5BQ15173 497 aa15.9■□□□□ 0.14
CD44-224ENST00000526669 CPLX2Q6PUV4 134 aaKnown RBP15.9■□□□□ 0.14
CD44-224ENST00000526669 ANKRD13CQ8N6S4 541 aa15.9■□□□□ 0.14
CD44-224ENST00000526669 NSUN7Q8NE18 718 aaKnown RBP15.9■□□□□ 0.14
CD44-224ENST00000526669 IL27Q8NEV9 243 aa15.9■□□□□ 0.14
CD44-224ENST00000526669 REPS2Q8NFH8 660 aa15.9■□□□□ 0.14
CD44-224ENST00000526669 RRP36Q96EU6 259 aaKnown RBP15.9■□□□□ 0.14
CD44-224ENST00000526669 DDX11Q96FC9 970 aa15.9■□□□□ 0.14
CD44-224ENST00000526669 SLC38A10Q9HBR0 1119 aa15.9■□□□□ 0.14
CD44-224ENST00000526669 TXNRD2Q9NNW7 524 aa15.9■□□□□ 0.14
CD44-224ENST00000526669 MYH7BA7E2Y1 1941 aa15.9■□□□□ 0.14
CD44-224ENST00000526669 PTPDC1A2A3K4 754 aa15.89■□□□□ 0.13
CD44-224ENST00000526669 CA12O43570 354 aa15.89■□□□□ 0.13
CD44-224ENST00000526669 ALDH1A1P00352 501 aa15.89■□□□□ 0.13
CD44-224ENST00000526669 FOSBP53539 338 aa15.89■□□□□ 0.13
CD44-224ENST00000526669 TMEM132BQ14DG7 1078 aa15.89■□□□□ 0.13
CD44-224ENST00000526669 USH1GQ495M9 461 aa15.89■□□□□ 0.13
CD44-224ENST00000526669 LBX2Q6XYB7 198 aa15.89■□□□□ 0.13
CD44-224ENST00000526669 SPRYD3Q8NCJ5 442 aa15.89■□□□□ 0.13
CD44-224ENST00000526669 AGBL1Q96MI9 1066 aa15.89■□□□□ 0.13
CD44-224ENST00000526669 RBPJLQ9UBG7 517 aa15.89■□□□□ 0.13
CD44-224ENST00000526669 TSKSQ9UJT2 592 aa15.89■□□□□ 0.13
CD44-224ENST00000526669 ADAMTS5Q9UNA0 930 aa15.89■□□□□ 0.13
CD44-224ENST00000526669 V9GY48 417 aaPredicted RBP15.89■□□□□ 0.13
CD44-224ENST00000526669 PPP1R11O60927 126 aaPredicted RBP15.88■□□□□ 0.13
CD44-224ENST00000526669 ERVK-9P63128 1117 aa15.88■□□□□ 0.13
CD44-224ENST00000526669 ERVK-24P63145 666 aa15.88■□□□□ 0.13
CD44-224ENST00000526669 AKAP17AQ02040 695 aaKnown RBP15.88■□□□□ 0.13
CD44-224ENST00000526669 Q3C1V9 767 aa15.88■□□□□ 0.13
CD44-224ENST00000526669 SNRNP48Q6IEG0 339 aaKnown RBP15.88■□□□□ 0.13
CD44-224ENST00000526669 GPKOWQ92917 476 aaPredicted RBP eCLIP15.88■□□□□ 0.13
CD44-224ENST00000526669 COA7Q96BR5 231 aa15.88■□□□□ 0.13
CD44-224ENST00000526669 MTMR8Q96EF0 704 aa15.88■□□□□ 0.13
CD44-224ENST00000526669 HOMER2Q9NSB8 354 aa15.88■□□□□ 0.13
CD44-224ENST00000526669 SEC63Q9UGP8 760 aaKnown RBP15.88■□□□□ 0.13
CD44-224ENST00000526669 CCPG1Q9ULG6 757 aa15.88■□□□□ 0.13
CD44-224ENST00000526669 RABGAP1Q9Y3P9 1069 aa15.88■□□□□ 0.13
CD44-224ENST00000526669 RBM19Q9Y4C8 960 aaKnown RBP15.88■□□□□ 0.13
CD44-224ENST00000526669 ZNF536O15090 1300 aa15.88■□□□□ 0.13
CD44-224ENST00000526669 MYH15Q9Y2K3 1946 aa15.88■□□□□ 0.13
CD44-224ENST00000526669 ZBTB5O15062 677 aa15.87■□□□□ 0.13
CD44-224ENST00000526669 PRPF3O43395 683 aaKnown RBP15.87■□□□□ 0.13
CD44-224ENST00000526669 TLR2O60603 784 aa15.87■□□□□ 0.13
CD44-224ENST00000526669 CDKL5O76039 1030 aa15.87■□□□□ 0.13
CD44-224ENST00000526669 FMNL1O95466 1100 aaPredicted RBP15.87■□□□□ 0.13
CD44-224ENST00000526669 ALAS1P13196 640 aa15.87■□□□□ 0.13
CD44-224ENST00000526669 SMARCA1P28370 1054 aa15.87■□□□□ 0.13
CD44-224ENST00000526669 GCLCP48506 637 aaPredicted RBP15.87■□□□□ 0.13
CD44-224ENST00000526669 FBXO11Q86XK2 927 aa15.87■□□□□ 0.13
CD44-224ENST00000526669 TRIM22Q8IYM9 498 aa15.87■□□□□ 0.13
CD44-224ENST00000526669 MB21D1Q8N884 522 aa15.87■□□□□ 0.13
CD44-224ENST00000526669 GTF3C2Q8WUA4 911 aaPredicted RBP15.87■□□□□ 0.13
CD44-224ENST00000526669 AIFM3Q96NN9 605 aa15.87■□□□□ 0.13
CD44-224ENST00000526669 SPATC1LQ9H0A9 340 aa15.87■□□□□ 0.13
CD44-224ENST00000526669 ORC3Q9UBD5 711 aaPredicted RBP15.87■□□□□ 0.13
CD44-224ENST00000526669 ZNF214Q9UL59 606 aaPredicted RBP15.87■□□□□ 0.13
CD44-224ENST00000526669 KIAA1217Q5T5P2 1943 aa15.87■□□□□ 0.13
CD44-224ENST00000526669 PNMA6FA0A0J9YX94 578 aa15.86■□□□□ 0.13
CD44-224ENST00000526669 FDX1P10109 184 aa15.86■□□□□ 0.13
CD44-224ENST00000526669 BCRP11274 1271 aa15.86■□□□□ 0.13
CD44-224ENST00000526669 ANP32AP39687 249 aaKnown RBP15.86■□□□□ 0.13
CD44-224ENST00000526669 MAP2K1Q02750 393 aaPredicted RBP15.86■□□□□ 0.13
CD44-224ENST00000526669 CUL4AQ13619 759 aa15.86■□□□□ 0.13
CD44-224ENST00000526669 PKN1Q16512 942 aa15.86■□□□□ 0.13
CD44-224ENST00000526669 WDR78Q5VTH9 848 aa15.86■□□□□ 0.13
CD44-224ENST00000526669 C17orf99Q6UX52 265 aa15.86■□□□□ 0.13
CD44-224ENST00000526669 HEATR3Q7Z4Q2 680 aa15.86■□□□□ 0.13
CD44-224ENST00000526669 RNF26Q9BY78 433 aaPredicted RBP15.86■□□□□ 0.13
CD44-224ENST00000526669 RIPK3Q9Y572 518 aa15.86■□□□□ 0.13
CD44-224ENST00000526669 ICAM1P05362 532 aa15.85■□□□□ 0.13
CD44-224ENST00000526669 FDPSP14324 419 aaKnown RBP15.85■□□□□ 0.13
CD44-224ENST00000526669 STAT3P40763 770 aa15.85■□□□□ 0.13
CD44-224ENST00000526669 BECN1Q14457 450 aa15.85■□□□□ 0.13
CD44-224ENST00000526669 FAM110CQ1W6H9 321 aa15.85■□□□□ 0.13
CD44-224ENST00000526669 WWC2Q6AWC2 1192 aa15.85■□□□□ 0.13
CD44-224ENST00000526669 NCAPG2Q86XI2 1143 aa15.85■□□□□ 0.13
CD44-224ENST00000526669 GPRC5AQ8NFJ5 357 aa15.85■□□□□ 0.13
CD44-224ENST00000526669 SMARCC2Q8TAQ2 1214 aa15.85■□□□□ 0.13
CD44-224ENST00000526669 BEGAINQ9BUH8 593 aa15.85■□□□□ 0.13
CD44-224ENST00000526669 MOV10L1Q9BXT6 1211 aaKnown RBP15.85■□□□□ 0.13
CD44-224ENST00000526669 PORCNQ9H237 461 aa15.85■□□□□ 0.13
CD44-224ENST00000526669 MORF4L1Q9UBU8 362 aa15.85■□□□□ 0.13
CD44-224ENST00000526669 STK36Q9NRP7 1315 aa15.85■□□□□ 0.13
CD44-224ENST00000526669 DEXIO95424 95 aa15.84■□□□□ 0.13
CD44-224ENST00000526669 SCG2P13521 617 aa15.84■□□□□ 0.13
CD44-224ENST00000526669 GJB2P29033 226 aa15.84■□□□□ 0.13
CD44-224ENST00000526669 PFKFB3Q16875 520 aaPredicted RBP15.84■□□□□ 0.13
CD44-224ENST00000526669 MUM1L1Q5H9M0 696 aa15.84■□□□□ 0.13
CD44-224ENST00000526669 TRERF1Q96PN7 1200 aa15.84■□□□□ 0.13
CD44-224ENST00000526669 LLPHQ9BRT6 129 aaKnown RBP15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms