RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 ZBED4O75132 1171 aa17.8■□□□□ 0.44
LSM1-203ENST00000520755 ANP32AP39687 249 aaKnown RBP17.8■□□□□ 0.44
LSM1-203ENST00000520755 SNAP25P60880 206 aa17.8■□□□□ 0.44
LSM1-203ENST00000520755 SYDE2Q5VT97 1194 aa17.8■□□□□ 0.44
LSM1-203ENST00000520755 BTNL9Q6UXG8 535 aa17.8■□□□□ 0.44
LSM1-203ENST00000520755 CMTR1Q8N1G2 835 aaKnown RBP17.8■□□□□ 0.44
LSM1-203ENST00000520755 SRBD1Q8N5C6 995 aaKnown RBP17.8■□□□□ 0.44
LSM1-203ENST00000520755 MB21D1Q8N884 522 aa17.8■□□□□ 0.44
LSM1-203ENST00000520755 CTCFLQ8NI51 663 aaPredicted RBP17.8■□□□□ 0.44
LSM1-203ENST00000520755 CD99L2Q8TCZ2 262 aa17.8■□□□□ 0.44
LSM1-203ENST00000520755 UBA5Q9GZZ9 404 aa17.8■□□□□ 0.44
LSM1-203ENST00000520755 ADAMTS5Q9UNA0 930 aa17.8■□□□□ 0.44
LSM1-203ENST00000520755 CYTH3O43739 400 aa17.79■□□□□ 0.44
LSM1-203ENST00000520755 DHX16O60231 1041 aaKnown RBP17.79■□□□□ 0.44
LSM1-203ENST00000520755 LACTBP83111 547 aaPredicted RBP17.79■□□□□ 0.44
LSM1-203ENST00000520755 KIF22Q14807 665 aa17.79■□□□□ 0.44
LSM1-203ENST00000520755 TMEM132BQ14DG7 1078 aa17.79■□□□□ 0.44
LSM1-203ENST00000520755 Q3C1V9 767 aa17.79■□□□□ 0.44
LSM1-203ENST00000520755 ERO1AQ96HE7 468 aa17.79■□□□□ 0.44
LSM1-203ENST00000520755 ARHGAP39Q9C0H5 1083 aa17.79■□□□□ 0.44
LSM1-203ENST00000520755 RBM28Q9NW13 759 aaKnown RBP17.79■□□□□ 0.44
LSM1-203ENST00000520755 PLXNB2O15031 1838 aa17.79■□□□□ 0.44
LSM1-203ENST00000520755 KLRF2D3W0D1 207 aa17.78■□□□□ 0.44
LSM1-203ENST00000520755 KIF5BP33176 963 aa17.78■□□□□ 0.44
LSM1-203ENST00000520755 SLC4A3P48751 1232 aa17.78■□□□□ 0.44
LSM1-203ENST00000520755 CCDC174Q6PII3 467 aa17.78■□□□□ 0.44
LSM1-203ENST00000520755 CCAR1Q8IX12 1150 aaKnown RBP17.78■□□□□ 0.44
LSM1-203ENST00000520755 CPXCR1Q8N123 301 aa17.78■□□□□ 0.44
LSM1-203ENST00000520755 NSUN7Q8NE18 718 aaKnown RBP17.78■□□□□ 0.44
LSM1-203ENST00000520755 REPS2Q8NFH8 660 aa17.78■□□□□ 0.44
LSM1-203ENST00000520755 SPATC1LQ9H0A9 340 aa17.78■□□□□ 0.44
LSM1-203ENST00000520755 SLC38A10Q9HBR0 1119 aa17.78■□□□□ 0.44
LSM1-203ENST00000520755 MYH15Q9Y2K3 1946 aa17.77■□□□□ 0.44
LSM1-203ENST00000520755 JAK2O60674 1132 aa17.77■□□□□ 0.44
LSM1-203ENST00000520755 PPFIA3O75145 1194 aa17.77■□□□□ 0.44
LSM1-203ENST00000520755 CCNA1P78396 465 aa17.77■□□□□ 0.44
LSM1-203ENST00000520755 PPP2R5BQ15173 497 aa17.77■□□□□ 0.44
LSM1-203ENST00000520755 SPZ1Q9BXG8 430 aa17.77■□□□□ 0.44
LSM1-203ENST00000520755 PORCNQ9H237 461 aa17.77■□□□□ 0.44
LSM1-203ENST00000520755 CWC22Q9HCG8 908 aaKnown RBP17.77■□□□□ 0.44
LSM1-203ENST00000520755 RAVER2Q9HCJ3 691 aaKnown RBP17.77■□□□□ 0.44
LSM1-203ENST00000520755 VAT1LQ9HCJ6 419 aa17.77■□□□□ 0.44
LSM1-203ENST00000520755 ZNF214Q9UL59 606 aaPredicted RBP17.77■□□□□ 0.44
LSM1-203ENST00000520755 DOCK3Q8IZD9 2030 aa17.77■□□□□ 0.43
LSM1-203ENST00000520755 FMNL1O95466 1100 aaPredicted RBP17.76■□□□□ 0.43
LSM1-203ENST00000520755 FDX1P10109 184 aa17.76■□□□□ 0.43
LSM1-203ENST00000520755 IFNAR1P17181 557 aa17.76■□□□□ 0.43
LSM1-203ENST00000520755 CTGFP29279 349 aa17.76■□□□□ 0.43
LSM1-203ENST00000520755 STAT3P40763 770 aa17.76■□□□□ 0.43
LSM1-203ENST00000520755 PSMC4P43686 418 aa17.76■□□□□ 0.43
LSM1-203ENST00000520755 FCGRTP55899 365 aa17.76■□□□□ 0.43
LSM1-203ENST00000520755 CAP1Q01518 475 aa17.76■□□□□ 0.43
LSM1-203ENST00000520755 WDR78Q5VTH9 848 aa17.76■□□□□ 0.43
LSM1-203ENST00000520755 SNRNP48Q6IEG0 339 aaKnown RBP17.76■□□□□ 0.43
LSM1-203ENST00000520755 ADGRF4Q8IZF3 695 aa17.76■□□□□ 0.43
LSM1-203ENST00000520755 SMARCC2Q8TAQ2 1214 aa17.76■□□□□ 0.43
LSM1-203ENST00000520755 PHKBQ93100 1093 aa17.76■□□□□ 0.43
LSM1-203ENST00000520755 MOV10L1Q9BXT6 1211 aaKnown RBP17.76■□□□□ 0.43
LSM1-203ENST00000520755 RANBP17Q9H2T7 1088 aaKnown RBP17.76■□□□□ 0.43
LSM1-203ENST00000520755 EFCC1Q9HA90 598 aa17.76■□□□□ 0.43
LSM1-203ENST00000520755 LCTP09848 1927 aa17.75■□□□□ 0.43
LSM1-203ENST00000520755 CCDC196A0A1B0GTZ2 297 aa17.75■□□□□ 0.43
LSM1-203ENST00000520755 PTPDC1A2A3K4 754 aa17.75■□□□□ 0.43
LSM1-203ENST00000520755 BECN1Q14457 450 aa17.75■□□□□ 0.43
LSM1-203ENST00000520755 CDC37Q16543 378 aaPredicted RBP17.75■□□□□ 0.43
LSM1-203ENST00000520755 NCAPG2Q86XI2 1143 aa17.75■□□□□ 0.43
LSM1-203ENST00000520755 CCDC82Q8N4S0 544 aa17.75■□□□□ 0.43
LSM1-203ENST00000520755 TRIM47Q96LD4 638 aa17.75■□□□□ 0.43
LSM1-203ENST00000520755 TEX13BQ9BXU2 312 aa17.75■□□□□ 0.43
LSM1-203ENST00000520755 RIOX1Q9H6W3 641 aa17.75■□□□□ 0.43
LSM1-203ENST00000520755 PRDM10Q9NQV6 1147 aa17.75■□□□□ 0.43
LSM1-203ENST00000520755 ZNF536O15090 1300 aa17.74■□□□□ 0.43
LSM1-203ENST00000520755 STK36Q9NRP7 1315 aa17.74■□□□□ 0.43
LSM1-203ENST00000520755 ZNFX1Q9P2E3 1918 aaKnown RBP17.74■□□□□ 0.43
LSM1-203ENST00000520755 TNPO2O14787 897 aaKnown RBP17.74■□□□□ 0.43
LSM1-203ENST00000520755 FDPSP14324 419 aaKnown RBP17.74■□□□□ 0.43
LSM1-203ENST00000520755 ERCC3P19447 782 aa17.74■□□□□ 0.43
LSM1-203ENST00000520755 MAPK4P31152 587 aa17.74■□□□□ 0.43
LSM1-203ENST00000520755 GNAQP50148 359 aa17.74■□□□□ 0.43
LSM1-203ENST00000520755 OAZ1P54368 228 aa17.74■□□□□ 0.43
LSM1-203ENST00000520755 RIOX2Q8IUF8 465 aa17.74■□□□□ 0.43
LSM1-203ENST00000520755 MTMR8Q96EF0 704 aa17.74■□□□□ 0.43
LSM1-203ENST00000520755 AGBL1Q96MI9 1066 aa17.74■□□□□ 0.43
LSM1-203ENST00000520755 LLPHQ9BRT6 129 aaKnown RBP17.74■□□□□ 0.43
LSM1-203ENST00000520755 JMJD4Q9H9V9 463 aa17.74■□□□□ 0.43
LSM1-203ENST00000520755 FOXD4L1Q9NU39 408 aa17.74■□□□□ 0.43
LSM1-203ENST00000520755 TRIM17Q9Y577 477 aa17.74■□□□□ 0.43
LSM1-203ENST00000520755 hCG_1642624A0A1W2PR95 340 aa17.73■□□□□ 0.43
LSM1-203ENST00000520755 CPLX1O14810 134 aa17.73■□□□□ 0.43
LSM1-203ENST00000520755 ATP2A1O14983 1001 aa17.73■□□□□ 0.43
LSM1-203ENST00000520755 SLC25A27O95847 323 aa17.73■□□□□ 0.43
LSM1-203ENST00000520755 TAL1P17542 331 aaPredicted RBP17.73■□□□□ 0.43
LSM1-203ENST00000520755 SMARCA1P28370 1054 aa17.73■□□□□ 0.43
LSM1-203ENST00000520755 ARHGEF6Q15052 776 aa17.73■□□□□ 0.43
LSM1-203ENST00000520755 HOMER1Q86YM7 354 aa17.73■□□□□ 0.43
LSM1-203ENST00000520755 PIBF1Q8WXW3 757 aa17.73■□□□□ 0.43
LSM1-203ENST00000520755 INTS4Q96HW7 963 aaKnown RBP17.73■□□□□ 0.43
LSM1-203ENST00000520755 LZTS2Q9BRK4 669 aa17.73■□□□□ 0.43
LSM1-203ENST00000520755 RNF26Q9BY78 433 aaPredicted RBP17.73■□□□□ 0.43
LSM1-203ENST00000520755 HOMER2Q9NSB8 354 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms