RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 NMIQ13287 307 aaPredicted RBP10.17□□□□□ -0.78
LSM1-202ENST00000520286 PRSS53Q2L4Q9 553 aa10.17□□□□□ -0.78
LSM1-202ENST00000520286 DPY19L1Q2PZI1 675 aa10.17□□□□□ -0.78
LSM1-202ENST00000520286 DDX46Q7L014 1031 aaKnown RBP10.17□□□□□ -0.78
LSM1-202ENST00000520286 MAMDC2Q7Z304 686 aaPredicted RBP10.17□□□□□ -0.78
LSM1-202ENST00000520286 AFAP1L2Q8N4X5 818 aa10.17□□□□□ -0.78
LSM1-202ENST00000520286 MINPP1Q9UNW1 487 aa10.17□□□□□ -0.78
LSM1-202ENST00000520286 FAM83GA6ND36 823 aa10.16□□□□□ -0.78
LSM1-202ENST00000520286 OPA1O60313 960 aa10.16□□□□□ -0.78
LSM1-202ENST00000520286 ASLP04424 464 aa10.16□□□□□ -0.78
LSM1-202ENST00000520286 KIR3DL1P43629 444 aa10.16□□□□□ -0.78
LSM1-202ENST00000520286 SLC35F1Q5T1Q4 408 aa10.16□□□□□ -0.78
LSM1-202ENST00000520286 WWC2Q6AWC2 1192 aa10.16□□□□□ -0.78
LSM1-202ENST00000520286 BEND4Q6ZU67 534 aa10.16□□□□□ -0.78
LSM1-202ENST00000520286 USP53Q70EK8 1073 aa10.16□□□□□ -0.78
LSM1-202ENST00000520286 ATL2Q8NHH9 583 aa10.16□□□□□ -0.78
LSM1-202ENST00000520286 LEO1Q8WVC0 666 aaPredicted RBP10.16□□□□□ -0.78
LSM1-202ENST00000520286 C1orf159Q96HA4 380 aa10.16□□□□□ -0.78
LSM1-202ENST00000520286 ALG1L2C9J202 215 aa10.15□□□□□ -0.78
LSM1-202ENST00000520286 NEK4P51957 841 aa10.15□□□□□ -0.78
LSM1-202ENST00000520286 EXOSC10Q01780 885 aaKnown RBP10.15□□□□□ -0.78
LSM1-202ENST00000520286 POU4F1Q01851 419 aa10.15□□□□□ -0.78
LSM1-202ENST00000520286 BRDTQ58F21 947 aaPredicted RBP10.15□□□□□ -0.78
LSM1-202ENST00000520286 TXNRD3Q86VQ6 643 aa10.15□□□□□ -0.78
LSM1-202ENST00000520286 SCLYQ96I15 445 aa10.15□□□□□ -0.78
LSM1-202ENST00000520286 MAGEB10Q96LZ2 347 aaPredicted RBP10.15□□□□□ -0.78
LSM1-202ENST00000520286 ADAMTS8Q9UP79 889 aa10.15□□□□□ -0.78
LSM1-202ENST00000520286 DHX15O43143 795 aaKnown RBP10.14□□□□□ -0.79
LSM1-202ENST00000520286 GSNP06396 782 aa10.14□□□□□ -0.79
LSM1-202ENST00000520286 CPEP16870 476 aa10.14□□□□□ -0.79
LSM1-202ENST00000520286 POU3F2P20265 443 aaPredicted RBP10.14□□□□□ -0.79
LSM1-202ENST00000520286 PMLP29590 882 aa10.14□□□□□ -0.79
LSM1-202ENST00000520286 IGFALSP35858 605 aa10.14□□□□□ -0.79
LSM1-202ENST00000520286 CYP4F3Q08477 520 aa10.14□□□□□ -0.79
LSM1-202ENST00000520286 SCRN1Q12765 414 aa10.14□□□□□ -0.79
LSM1-202ENST00000520286 FAM50AQ14320 339 aaKnown RBP10.14□□□□□ -0.79
LSM1-202ENST00000520286 ZNF460Q14592 562 aa10.14□□□□□ -0.79
LSM1-202ENST00000520286 ODR4Q5SWX8 454 aa10.14□□□□□ -0.79
LSM1-202ENST00000520286 CWF19L1Q69YN2 538 aaKnown RBP10.14□□□□□ -0.79
LSM1-202ENST00000520286 FAM214BQ7L5A3 538 aa10.14□□□□□ -0.79
LSM1-202ENST00000520286 STRA8Q7Z7C7 330 aa10.14□□□□□ -0.79
LSM1-202ENST00000520286 GTF2IRD1Q9UHL9 959 aa10.14□□□□□ -0.79
LSM1-202ENST00000520286 TRAF6Q9Y4K3 522 aa10.14□□□□□ -0.79
LSM1-202ENST00000520286 PCBP1Q15365 356 aaKnown RBP eCLIP10.13□□□□□ -0.79
LSM1-202ENST00000520286 CLEC10AQ8IUN9 316 aa10.13□□□□□ -0.79
LSM1-202ENST00000520286 DCAF4Q8WV16 495 aa10.13□□□□□ -0.79
LSM1-202ENST00000520286 JDP2Q8WYK2 163 aa10.13□□□□□ -0.79
LSM1-202ENST00000520286 MCMBPQ9BTE3 642 aa10.13□□□□□ -0.79
LSM1-202ENST00000520286 CHPF2Q9P2E5 772 aa10.13□□□□□ -0.79
LSM1-202ENST00000520286 CCDC180Q9P1Z9 1646 aa10.13□□□□□ -0.79
LSM1-202ENST00000520286 SHISA3A0PJX4 238 aa10.12□□□□□ -0.79
LSM1-202ENST00000520286 STXBP3O00186 592 aa10.12□□□□□ -0.79
LSM1-202ENST00000520286 WIPF1O43516 503 aa10.12□□□□□ -0.79
LSM1-202ENST00000520286 NPTXRO95502 500 aa10.12□□□□□ -0.79
LSM1-202ENST00000520286 FLT3P36888 993 aa10.12□□□□□ -0.79
LSM1-202ENST00000520286 CTSKP43235 329 aa10.12□□□□□ -0.79
LSM1-202ENST00000520286 STRN3Q13033 797 aa10.12□□□□□ -0.79
LSM1-202ENST00000520286 CLEC16AQ2KHT3 1053 aa10.12□□□□□ -0.79
LSM1-202ENST00000520286 DENND5AQ6IQ26 1287 aa10.12□□□□□ -0.79
LSM1-202ENST00000520286 STYK1Q6J9G0 422 aa10.12□□□□□ -0.79
LSM1-202ENST00000520286 PKN3Q6P5Z2 889 aa10.12□□□□□ -0.79
LSM1-202ENST00000520286 CRTC3Q6UUV7 619 aa10.12□□□□□ -0.79
LSM1-202ENST00000520286 KREMEN2Q8NCW0 462 aa10.12□□□□□ -0.79
LSM1-202ENST00000520286 ENOX1Q8TC92 643 aaKnown RBP10.12□□□□□ -0.79
LSM1-202ENST00000520286 SCARF2Q96GP6 870 aaPredicted RBP10.12□□□□□ -0.79
LSM1-202ENST00000520286 HEXIM2Q96MH2 286 aaKnown RBP10.12□□□□□ -0.79
LSM1-202ENST00000520286 FAM83CQ9BQN1 747 aa10.12□□□□□ -0.79
LSM1-202ENST00000520286 ASXL2Q76L83 1435 aa10.12□□□□□ -0.79
LSM1-202ENST00000520286 TCRBV16S1A1N1A0A5B0 115 aa10.11□□□□□ -0.79
LSM1-202ENST00000520286 PRR33A8MZF0 331 aa10.11□□□□□ -0.79
LSM1-202ENST00000520286 AQP7O14520 342 aa10.11□□□□□ -0.79
LSM1-202ENST00000520286 KPNA6O60684 536 aa10.11□□□□□ -0.79
LSM1-202ENST00000520286 RASGRP1O95267 797 aa10.11□□□□□ -0.79
LSM1-202ENST00000520286 EYA4O95677 639 aa10.11□□□□□ -0.79
LSM1-202ENST00000520286 CRTAMO95727 393 aa10.11□□□□□ -0.79
LSM1-202ENST00000520286 CD3EP07766 207 aa10.11□□□□□ -0.79
LSM1-202ENST00000520286 JMJD7P0C870 316 aa10.11□□□□□ -0.79
LSM1-202ENST00000520286 LORP23490 312 aaPredicted RBP10.11□□□□□ -0.79
LSM1-202ENST00000520286 TNK2Q07912 1038 aa10.11□□□□□ -0.79
LSM1-202ENST00000520286 OGFOD3Q6PK18 319 aa10.11□□□□□ -0.79
LSM1-202ENST00000520286 C22orf34Q6ZV56 151 aa10.11□□□□□ -0.79
LSM1-202ENST00000520286 PIWIL2Q8TC59 973 aaKnown RBP10.11□□□□□ -0.79
LSM1-202ENST00000520286 COPS5Q92905 334 aa10.11□□□□□ -0.79
LSM1-202ENST00000520286 TBC1D32Q96NH3 1257 aa10.11□□□□□ -0.79
LSM1-202ENST00000520286 HDAC8Q9BY41 377 aa10.11□□□□□ -0.79
LSM1-202ENST00000520286 MTFR1LQ9H019 292 aa10.11□□□□□ -0.79
LSM1-202ENST00000520286 RNF112Q9ULX5 631 aa10.11□□□□□ -0.79
LSM1-202ENST00000520286 ST14Q9Y5Y6 855 aa10.11□□□□□ -0.79
LSM1-202ENST00000520286 AURKAO14965 403 aa10.1□□□□□ -0.79
LSM1-202ENST00000520286 APPP05067 770 aa10.1□□□□□ -0.79
LSM1-202ENST00000520286 THBDP07204 575 aa10.1□□□□□ -0.79
LSM1-202ENST00000520286 ZNF865P0CJ78 1059 aaPredicted RBP10.1□□□□□ -0.79
LSM1-202ENST00000520286 KCNT2Q6UVM3 1135 aa10.1□□□□□ -0.79
LSM1-202ENST00000520286 UBE2R2Q712K3 238 aaPredicted RBP10.1□□□□□ -0.79
LSM1-202ENST00000520286 PPIL6Q8IXY8 311 aa10.1□□□□□ -0.79
LSM1-202ENST00000520286 DAGLBQ8NCG7 672 aa10.1□□□□□ -0.79
LSM1-202ENST00000520286 GATA6Q92908 595 aa10.1□□□□□ -0.79
LSM1-202ENST00000520286 GPRC5CQ9NQ84 441 aa10.1□□□□□ -0.79
LSM1-202ENST00000520286 BACE2Q9Y5Z0 518 aa10.1□□□□□ -0.79
LSM1-202ENST00000520286 CAPN6Q9Y6Q1 641 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms