RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 FAM207AQ9NSI2 230 aaPredicted RBP12.41□□□□□ -0.42
TCOF1-211ENST00000513346 ASAP1Q9ULH1 1129 aa12.41□□□□□ -0.42
TCOF1-211ENST00000513346 RASSF2P50749 326 aa12.41□□□□□ -0.42
TCOF1-211ENST00000513346 C2orf54Q08AI8 447 aa12.41□□□□□ -0.42
TCOF1-211ENST00000513346 TOB2Q14106 344 aaPredicted RBP12.41□□□□□ -0.42
TCOF1-211ENST00000513346 ASIC2Q16515 512 aa12.41□□□□□ -0.42
TCOF1-211ENST00000513346 SLC24A3Q9HC58 644 aa12.41□□□□□ -0.42
TCOF1-211ENST00000513346 ZMYM6O95789 1325 aa12.41□□□□□ -0.42
TCOF1-211ENST00000513346 ATP2A1O14983 1001 aa12.41□□□□□ -0.42
TCOF1-211ENST00000513346 CTNNA2P26232 953 aa12.41□□□□□ -0.42
TCOF1-211ENST00000513346 LARGE2Q8N3Y3 721 aa12.41□□□□□ -0.42
TCOF1-211ENST00000513346 SPATA5Q8NB90 893 aa12.41□□□□□ -0.42
TCOF1-211ENST00000513346 HAUS7Q99871 368 aa12.41□□□□□ -0.42
TCOF1-211ENST00000513346 IQCGQ9H095 443 aaKnown RBP12.41□□□□□ -0.42
TCOF1-211ENST00000513346 AATFQ9NY61 560 aaKnown RBP eCLIP12.41□□□□□ -0.42
TCOF1-211ENST00000513346 TLR7Q9NYK1 1049 aaKnown RBP12.41□□□□□ -0.42
TCOF1-211ENST00000513346 V9GY48 417 aaPredicted RBP12.41□□□□□ -0.42
TCOF1-211ENST00000513346 MAST3O60307 1309 aa12.4□□□□□ -0.42
TCOF1-211ENST00000513346 ZNF532Q9HCE3 1301 aa12.4□□□□□ -0.42
TCOF1-211ENST00000513346 NDUFA10O95299 355 aa12.4□□□□□ -0.42
TCOF1-211ENST00000513346 PPP2R5BQ15173 497 aa12.4□□□□□ -0.42
TCOF1-211ENST00000513346 PIK3AP1Q6ZUJ8 805 aa12.4□□□□□ -0.42
TCOF1-211ENST00000513346 ARHGEF2Q92974 986 aaKnown RBP12.4□□□□□ -0.42
TCOF1-211ENST00000513346 EPB41L5Q9HCM4 733 aa12.4□□□□□ -0.42
TCOF1-211ENST00000513346 BTBD18B2RXH4 712 aa12.4□□□□□ -0.42
TCOF1-211ENST00000513346 MFAP3LO75121 409 aa12.4□□□□□ -0.42
TCOF1-211ENST00000513346 MUM1Q2TAK8 710 aa12.4□□□□□ -0.42
TCOF1-211ENST00000513346 SFMBT2Q5VUG0 894 aa12.4□□□□□ -0.42
TCOF1-211ENST00000513346 STAG1Q8WVM7 1258 aa12.4□□□□□ -0.42
TCOF1-211ENST00000513346 CNKSR1Q969H4 720 aa12.4□□□□□ -0.42
TCOF1-211ENST00000513346 SAAL1Q96ER3 474 aa12.4□□□□□ -0.42
TCOF1-211ENST00000513346 KLHL14Q9P2G3 628 aa12.4□□□□□ -0.42
TCOF1-211ENST00000513346 DBNLQ9UJU6 430 aaKnown RBP12.4□□□□□ -0.42
TCOF1-211ENST00000513346 HEXIM1O94992 359 aaKnown RBP12.4□□□□□ -0.42
TCOF1-211ENST00000513346 KLHL30Q0D2K2 578 aa12.4□□□□□ -0.42
TCOF1-211ENST00000513346 SLMAPQ14BN4 828 aa12.4□□□□□ -0.42
TCOF1-211ENST00000513346 NBPF9Q3BBW0 867 aa12.4□□□□□ -0.42
TCOF1-211ENST00000513346 TMEM110-MUSTN1A8MSY1 372 aa12.39□□□□□ -0.43
TCOF1-211ENST00000513346 B4DLN1 442 aa12.39□□□□□ -0.43
TCOF1-211ENST00000513346 STAMBPO95630 424 aa12.39□□□□□ -0.43
TCOF1-211ENST00000513346 MRPL12P52815 198 aaKnown RBP12.39□□□□□ -0.43
TCOF1-211ENST00000513346 CTSWP56202 376 aa12.39□□□□□ -0.43
TCOF1-211ENST00000513346 SEL1L2Q5TEA6 688 aa12.39□□□□□ -0.43
TCOF1-211ENST00000513346 PEX26Q7Z412 305 aa12.39□□□□□ -0.43
TCOF1-211ENST00000513346 HOOK2Q96ED9 719 aa12.39□□□□□ -0.43
TCOF1-211ENST00000513346 FUCA2Q9BTY2 467 aa12.39□□□□□ -0.43
TCOF1-211ENST00000513346 TRIM4Q9C037 500 aa12.39□□□□□ -0.43
TCOF1-211ENST00000513346 SH2D4AQ9H788 454 aa12.39□□□□□ -0.43
TCOF1-211ENST00000513346 ADGRG1Q9Y653 693 aa12.39□□□□□ -0.43
TCOF1-211ENST00000513346 CPSF1Q10570 1443 aaKnown RBP12.39□□□□□ -0.43
TCOF1-211ENST00000513346 GTPBP6O43824 516 aaPredicted RBP12.39□□□□□ -0.43
TCOF1-211ENST00000513346 TBC1D8O95759 1140 aa12.39□□□□□ -0.43
TCOF1-211ENST00000513346 VSNL1P62760 191 aa12.39□□□□□ -0.43
TCOF1-211ENST00000513346 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.39□□□□□ -0.433e-8■□□□□ 10.1
TCOF1-211ENST00000513346 MCUR1Q96AQ8 359 aa12.39□□□□□ -0.43
TCOF1-211ENST00000513346 VIPAS39Q9H9C1 493 aa12.39□□□□□ -0.43
TCOF1-211ENST00000513346 DIP2BQ9P265 1576 aa12.39□□□□□ -0.43
TCOF1-211ENST00000513346 HMGB1P1B2RPK0 211 aaPredicted RBP12.39□□□□□ -0.43
TCOF1-211ENST00000513346 SH3BGRP55822 239 aaPredicted RBP12.39□□□□□ -0.43
TCOF1-211ENST00000513346 POLA2Q14181 598 aa12.39□□□□□ -0.43
TCOF1-211ENST00000513346 DPY19L2Q6NUT2 758 aa12.39□□□□□ -0.43
TCOF1-211ENST00000513346 GPIHBP1Q8IV16 184 aa12.39□□□□□ -0.43
TCOF1-211ENST00000513346 PPP1R14CQ8TAE6 165 aa12.39□□□□□ -0.43
TCOF1-211ENST00000513346 COG1Q8WTW3 980 aa12.39□□□□□ -0.43
TCOF1-211ENST00000513346 CIB2O75838 187 aa12.39□□□□□ -0.43
TCOF1-211ENST00000513346 FYB2Q5VWT5 728 aa12.39□□□□□ -0.43
TCOF1-211ENST00000513346 SYCE1Q8N0S2 351 aa12.39□□□□□ -0.43
TCOF1-211ENST00000513346 PUS3Q9BZE2 481 aaKnown RBP12.39□□□□□ -0.43
TCOF1-211ENST00000513346 RNF14Q9UBS8 474 aa12.39□□□□□ -0.43
TCOF1-211ENST00000513346 ATF5Q9Y2D1 282 aaPredicted RBP12.39□□□□□ -0.43
TCOF1-211ENST00000513346 KCNK3O14649 394 aa12.38□□□□□ -0.43
TCOF1-211ENST00000513346 BUB1O43683 1085 aa12.38□□□□□ -0.43
TCOF1-211ENST00000513346 ACTN3Q08043 901 aaPredicted RBP12.38□□□□□ -0.43
TCOF1-211ENST00000513346 ZBTB38Q8NAP3 1195 aaPredicted RBP12.38□□□□□ -0.43
TCOF1-211ENST00000513346 CCHCR1Q8TD31 782 aa12.38□□□□□ -0.43
TCOF1-211ENST00000513346 CEP152O94986 1710 aa12.38□□□□□ -0.43
TCOF1-211ENST00000513346 CCDC169A6NNP5 214 aa12.38□□□□□ -0.43
TCOF1-211ENST00000513346 CETN3O15182 167 aa12.38□□□□□ -0.43
TCOF1-211ENST00000513346 AP5Z1O43299 807 aa12.38□□□□□ -0.43
TCOF1-211ENST00000513346 PCCAP05165 728 aaPredicted RBP12.38□□□□□ -0.43
TCOF1-211ENST00000513346 USP14P54578 494 aa12.38□□□□□ -0.43
TCOF1-211ENST00000513346 MIPOL1Q8TD10 442 aa12.38□□□□□ -0.43
TCOF1-211ENST00000513346 KRT12Q99456 494 aa12.38□□□□□ -0.43
TCOF1-211ENST00000513346 GPCPD1Q9NPB8 672 aa12.38□□□□□ -0.43
TCOF1-211ENST00000513346 MED14O60244 1454 aa12.38□□□□□ -0.43
TCOF1-211ENST00000513346 ARHGEF40Q8TER5 1519 aa12.38□□□□□ -0.43
TCOF1-211ENST00000513346 ECM2O94769 699 aaPredicted RBP12.38□□□□□ -0.43
TCOF1-211ENST00000513346 ZNF131P52739 623 aa12.38□□□□□ -0.43
TCOF1-211ENST00000513346 CTDSPL2Q05D32 466 aa12.38□□□□□ -0.43
TCOF1-211ENST00000513346 CLUL1Q15846 466 aa12.38□□□□□ -0.43
TCOF1-211ENST00000513346 FBXW10Q5XX13 1052 aa12.38□□□□□ -0.43
TCOF1-211ENST00000513346 KLC4Q9NSK0 619 aa12.38□□□□□ -0.43
TCOF1-211ENST00000513346 PNPLA6Q8IY17 1366 aa12.38□□□□□ -0.43
TCOF1-211ENST00000513346 USP37Q86T82 979 aa12.38□□□□□ -0.43
TCOF1-211ENST00000513346 NIM1KQ8IY84 436 aa12.38□□□□□ -0.43
TCOF1-211ENST00000513346 ARHGAP24Q8N264 748 aa12.38□□□□□ -0.43
TCOF1-211ENST00000513346 RETREG2Q8NC44 543 aa12.38□□□□□ -0.43
TCOF1-211ENST00000513346 ARMC2Q8NEN0 867 aa12.38□□□□□ -0.43
TCOF1-211ENST00000513346 KRIT1O00522 736 aa12.37□□□□□ -0.43
TCOF1-211ENST00000513346 SUN1O94901 812 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms