RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 KCTD19Q17RG1 926 aaPredicted RBP13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 TTC39AQ5SRH9 613 aa13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 SPATA1Q5VX52 437 aa13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 NFRKBQ6P4R8 1299 aa13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 TEX9Q8N6V9 391 aa13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 SLC17A8Q8NDX2 589 aa13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 FGD4Q96M96 766 aa13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 CTAGE1Q96RT6 745 aa13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 CD163L1Q9NR16 1453 aa13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 PREX1Q8TCU6 1659 aa13.32□□□□□ -0.28
LIMCH1-213ENST00000511496 AGLP35573 1532 aa13.31□□□□□ -0.28
LIMCH1-213ENST00000511496 IGF2BP3O00425 579 aaKnown RBP eCLIP13.31□□□□□ -0.28
LIMCH1-213ENST00000511496 MYL6BP14649 208 aa13.31□□□□□ -0.28
LIMCH1-213ENST00000511496 STAT6P42226 847 aa13.31□□□□□ -0.28
LIMCH1-213ENST00000511496 RNASE9P60153 205 aaKnown RBP13.31□□□□□ -0.28
LIMCH1-213ENST00000511496 KIF23Q02241 960 aaPredicted RBP13.31□□□□□ -0.28
LIMCH1-213ENST00000511496 RESP18Q5W5W9 173 aa13.31□□□□□ -0.28
LIMCH1-213ENST00000511496 SDCCAG8Q86SQ7 713 aaPredicted RBP13.31□□□□□ -0.28
LIMCH1-213ENST00000511496 MIPOL1Q8TD10 442 aa13.31□□□□□ -0.28
LIMCH1-213ENST00000511496 ANKIB1Q9P2G1 1089 aa13.31□□□□□ -0.28
LIMCH1-213ENST00000511496 ABCC6O95255 1503 aa13.31□□□□□ -0.28
LIMCH1-213ENST00000511496 SYNRGQ9UMZ2 1314 aa13.31□□□□□ -0.28
LIMCH1-213ENST00000511496 TULP4Q9NRJ4 1543 aa13.31□□□□□ -0.28
LIMCH1-213ENST00000511496 A0A0G2JLW4 131 aa13.31□□□□□ -0.28
LIMCH1-213ENST00000511496 F8W031 263 aaPredicted RBP13.31□□□□□ -0.28
LIMCH1-213ENST00000511496 PFDN1O60925 122 aa13.31□□□□□ -0.28
LIMCH1-213ENST00000511496 NME9Q86XW9 330 aa13.31□□□□□ -0.28
LIMCH1-213ENST00000511496 KLHL29Q96CT2 875 aa13.31□□□□□ -0.28
LIMCH1-213ENST00000511496 ELAC2Q9BQ52 826 aaKnown RBP13.31□□□□□ -0.28
LIMCH1-213ENST00000511496 TMBIM4Q9HC24 238 aa13.31□□□□□ -0.28
LIMCH1-213ENST00000511496 SEC31BQ9NQW1 1179 aa13.31□□□□□ -0.28
LIMCH1-213ENST00000511496 MYH8P13535 1937 aa13.31□□□□□ -0.28
LIMCH1-213ENST00000511496 ZFYVE9O95405 1425 aa13.31□□□□□ -0.28
LIMCH1-213ENST00000511496 CFAP73A6NFT4 308 aa13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 CTNND1O60716 968 aaKnown RBP13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 ATP11AP98196 1134 aa13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 DYNC1I2Q13409 638 aaKnown RBP13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 MORC3Q14149 939 aa13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 Q4G0T1 1027 aa13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 RBM12Q9NTZ6 932 aaKnown RBP13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 DEPDC5O75140 1603 aa13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 SALL1Q9NSC2 1324 aa13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 EFCAB6Q5THR3 1501 aa13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 DRD4P21917 467 aa13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 MRPS35P82673 323 aaKnown RBP13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 EMC10Q5UCC4 262 aa13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 AFAP1Q8N556 730 aa13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 PROCA1Q8NCQ7 364 aaPredicted RBP13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 ANKRD24Q8TF21 1146 aa13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 NDNQ99608 321 aa13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 SLC12A6Q9UHW9 1150 aa13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 SNX12Q9UMY4 172 aa13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 UBN2Q6ZU65 1347 aa13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 ABCC3O15438 1527 aa13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 HIP1RO75146 1068 aa13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 NPTXRO95502 500 aa13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 CD151P48509 253 aa13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 PPP2R2AP63151 447 aa13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 KRT83P78385 493 aa13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 UBXN1Q04323 297 aa13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 ZRSR2Q15696 482 aaKnown RBP13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 CCDC38Q502W7 563 aa13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 GPIHBP1Q8IV16 184 aa13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 ASXL2Q76L83 1435 aa13.3□□□□□ -0.28
LIMCH1-213ENST00000511496 KRT16P08779 473 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 CD44P16070 742 aaKnown RBP13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 CEBPAP49715 358 aaPredicted RBP13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 MAGOHP61326 146 aaKnown RBP13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 LACTBP83111 547 aaPredicted RBP13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 MDM2Q00987 491 aaPredicted RBP13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 SEPT14Q6ZU15 432 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 MAGOHBQ96A72 148 aaKnown RBP13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 OPTNQ96CV9 577 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 MS4A14Q96JA4 679 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 JPH4Q96JJ6 628 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 SENP2Q9HC62 589 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 MED23Q9ULK4 1368 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 TTC26A0AVF1 554 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 SRRM3A6NNA2 597 aaPredicted RBP13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 DCDC2CA8MYV0 355 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 NCK2O43639 380 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 GRIN1Q05586 938 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 KIF5AQ12840 1032 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 RINLQ6ZS11 566 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 KIFAP3Q92845 792 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 CHMP6Q96FZ7 201 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 ECT2Q9H8V3 914 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 ABCF3Q9NUQ8 709 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 LNPEPQ9UIQ6 1025 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 ZMYND8Q9ULU4 1186 aaPredicted RBP13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 LUC7L2Q9Y383 392 aaKnown RBP13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 GPR75-ASB3A0A0A6YYF3 556 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 C5orf60A6NFR6 353 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 UBOX5O94941 541 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 DESP17661 470 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 KRT31Q15323 416 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 USPL1Q5W0Q7 1092 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 VPS37DQ86XT2 251 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 DTNBP1Q96EV8 351 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms