RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 PPP1R9AQ9ULJ8 1098 aa8.33□□□□□ -1.08
NUP54-204ENST00000506098 CIZ1Q9ULV3 898 aaPredicted RBP8.33□□□□□ -1.08
NUP54-204ENST00000506098 ZNF236Q9UL36 1845 aa8.33□□□□□ -1.08
NUP54-204ENST00000506098 LRRC37A2A6NM11 1700 aa8.32□□□□□ -1.08
NUP54-204ENST00000506098 MANSC4A6NHS7 340 aaPredicted RBP8.32□□□□□ -1.08
NUP54-204ENST00000506098 DTNBO60941 627 aa8.32□□□□□ -1.08
NUP54-204ENST00000506098 SYT1P21579 422 aa8.32□□□□□ -1.08
NUP54-204ENST00000506098 INHBEP58166 350 aa8.32□□□□□ -1.08
NUP54-204ENST00000506098 PABPC4Q13310 644 aaKnown RBP eCLIP8.32□□□□□ -1.08
NUP54-204ENST00000506098 TREML2Q5T2D2 321 aa8.32□□□□□ -1.08
NUP54-204ENST00000506098 LARP1BQ659C4 914 aaKnown RBP8.32□□□□□ -1.08
NUP54-204ENST00000506098 ANKRD23Q86SG2 305 aa8.32□□□□□ -1.08
NUP54-204ENST00000506098 FAM184AQ8NB25 1140 aa8.32□□□□□ -1.08
NUP54-204ENST00000506098 REPS2Q8NFH8 660 aa8.32□□□□□ -1.08
NUP54-204ENST00000506098 BRI3BPQ8WY22 251 aa8.32□□□□□ -1.08
NUP54-204ENST00000506098 DDX11Q96FC9 970 aa8.32□□□□□ -1.08
NUP54-204ENST00000506098 ALG1Q9BT22 464 aa8.32□□□□□ -1.08
NUP54-204ENST00000506098 TANGO6Q9C0B7 1094 aa8.32□□□□□ -1.08
NUP54-204ENST00000506098 SLC38A10Q9HBR0 1119 aa8.32□□□□□ -1.08
NUP54-204ENST00000506098 VAT1LQ9HCJ6 419 aa8.32□□□□□ -1.08
NUP54-204ENST00000506098 ZCCHC17Q9NP64 241 aaKnown RBP8.32□□□□□ -1.08
NUP54-204ENST00000506098 FBXO28Q9NVF7 368 aa8.32□□□□□ -1.08
NUP54-204ENST00000506098 BARHL2Q9NY43 387 aa8.32□□□□□ -1.08
NUP54-204ENST00000506098 ZNF536O15090 1300 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 LOXHD1Q8IVV2 1947 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 CCL15-CCL14A0A0B4J2E2 113 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 hCG_1642624A0A1W2PR95 340 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 ESYT2A0FGR8 921 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 SPDYE16A6NNV3 312 aaPredicted RBP8.31□□□□□ -1.08
NUP54-204ENST00000506098 BTBD19C9JJ37 291 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 STXBP3O00186 592 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 VWA5AO00534 786 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 ATP2A1O14983 1001 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 STX6O43752 255 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 PPP1R11O60927 126 aaPredicted RBP8.31□□□□□ -1.08
NUP54-204ENST00000506098 PPFIA3O75145 1194 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 FLOT1O75955 427 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 XBP1P17861 261 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 DEKP35659 375 aaKnown RBP8.31□□□□□ -1.08
NUP54-204ENST00000506098 TM4SF4P48230 202 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 OAZ1P54368 228 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 TRAF1Q13077 416 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 IKQ13123 557 aaPredicted RBP8.31□□□□□ -1.08
NUP54-204ENST00000506098 CDC37Q16543 378 aaPredicted RBP8.31□□□□□ -1.08
NUP54-204ENST00000506098 CCL15Q16663 113 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 QRICH1Q2TAL8 776 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 DEFB115Q30KQ5 88 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 WWC2Q6AWC2 1192 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 TEX2Q8IWB9 1127 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 FBXO18Q8NFZ0 1043 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 KIFC2Q96AC6 838 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 SHISA4Q96DD7 197 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 C8orf76Q96K31 380 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 AIFM3Q96NN9 605 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 PHF20Q9BVI0 1012 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 ASCC2Q9H1I8 757 aaPredicted RBP8.31□□□□□ -1.08
NUP54-204ENST00000506098 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.31□□□□□ -1.08
NUP54-204ENST00000506098 SEC63Q9UGP8 760 aaKnown RBP8.31□□□□□ -1.08
NUP54-204ENST00000506098 PNMA2Q9UL42 364 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 ABT1Q9ULW3 272 aaKnown RBP8.31□□□□□ -1.08
NUP54-204ENST00000506098 ZSWIM8A7E2V4 1837 aa8.31□□□□□ -1.08
NUP54-204ENST00000506098 ZBED4O75132 1171 aa8.3□□□□□ -1.08
NUP54-204ENST00000506098 BRD1O95696 1058 aa8.3□□□□□ -1.08
NUP54-204ENST00000506098 ICAM1P05362 532 aa8.3□□□□□ -1.08
NUP54-204ENST00000506098 OSBPP22059 807 aa8.3□□□□□ -1.08
NUP54-204ENST00000506098 NUCB2P80303 420 aa8.3□□□□□ -1.08
NUP54-204ENST00000506098 C1QBPQ07021 282 aaKnown RBP8.3□□□□□ -1.08
NUP54-204ENST00000506098 NPY5RQ15761 445 aa8.3□□□□□ -1.08
NUP54-204ENST00000506098 KRT40Q6A162 431 aa8.3□□□□□ -1.08
NUP54-204ENST00000506098 GALNT17Q6IS24 598 aa8.3□□□□□ -1.08
NUP54-204ENST00000506098 TYW1BQ6NUM6 668 aa8.3□□□□□ -1.08
NUP54-204ENST00000506098 PPP1R18Q6NYC8 613 aa8.3□□□□□ -1.08
NUP54-204ENST00000506098 POTEEQ6S8J3 1075 aa8.3□□□□□ -1.08
NUP54-204ENST00000506098 FBXO11Q86XK2 927 aa8.3□□□□□ -1.08
NUP54-204ENST00000506098 HOMER1Q86YM7 354 aa8.3□□□□□ -1.08
NUP54-204ENST00000506098 REM2Q8IYK8 340 aaPredicted RBP8.3□□□□□ -1.08
NUP54-204ENST00000506098 MB21D1Q8N884 522 aa8.3□□□□□ -1.08
NUP54-204ENST00000506098 GTF3C2Q8WUA4 911 aaPredicted RBP8.3□□□□□ -1.08
NUP54-204ENST00000506098 CCDC12Q8WUD4 166 aaPredicted RBP8.3□□□□□ -1.08
NUP54-204ENST00000506098 ATG4CQ96DT6 458 aa8.3□□□□□ -1.08
NUP54-204ENST00000506098 P2RX7Q99572 595 aaKnown RBP8.3□□□□□ -1.08
NUP54-204ENST00000506098 PTPN18Q99952 460 aa8.3□□□□□ -1.08
NUP54-204ENST00000506098 AMNQ9BXJ7 453 aa8.3□□□□□ -1.08
NUP54-204ENST00000506098 MAF1Q9H063 256 aa8.3□□□□□ -1.08
NUP54-204ENST00000506098 ZMYND12Q9H0C1 365 aa8.3□□□□□ -1.08
NUP54-204ENST00000506098 CHMP5Q9NZZ3 219 aa8.3□□□□□ -1.08
NUP54-204ENST00000506098 PNMA3Q9UL41 463 aa8.3□□□□□ -1.08
NUP54-204ENST00000506098 ZNF214Q9UL59 606 aaPredicted RBP8.3□□□□□ -1.08
NUP54-204ENST00000506098 ISY1Q9ULR0 285 aaKnown RBP8.3□□□□□ -1.08
NUP54-204ENST00000506098 MTMR6Q9Y217 621 aa8.3□□□□□ -1.08
NUP54-204ENST00000506098 KAT6AQ92794 2004 aa8.29□□□□□ -1.08
NUP54-204ENST00000506098 M0R2N6 131 aa8.29□□□□□ -1.08
NUP54-204ENST00000506098 PDHXO00330 501 aa8.29□□□□□ -1.08
NUP54-204ENST00000506098 MMP1P03956 469 aa8.29□□□□□ -1.08
NUP54-204ENST00000506098 CALML3P27482 149 aa8.29□□□□□ -1.08
NUP54-204ENST00000506098 HERVK_113P62684 666 aa8.29□□□□□ -1.08
NUP54-204ENST00000506098 IRX3P78415 501 aaPredicted RBP8.29□□□□□ -1.08
NUP54-204ENST00000506098 GHRHRQ02643 423 aa8.29□□□□□ -1.08
NUP54-204ENST00000506098 SREBF2Q12772 1141 aa8.29□□□□□ -1.08
NUP54-204ENST00000506098 NOGQ13253 232 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms