RNA–Protein interactions for RNA: ENST00000503338.5

TOPBP1-202, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 3

Gene TOPBP1, Length 618 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-202ENST00000503338 NR5A1Q13285 461 aa9.3□□□□□ -0.92
TOPBP1-202ENST00000503338 SH3D19Q5HYK7 790 aa9.3□□□□□ -0.92
TOPBP1-202ENST00000503338 PRAMEF18Q5VWM3 479 aa9.3□□□□□ -0.92
TOPBP1-202ENST00000503338 ADALQ6DHV7 355 aa9.3□□□□□ -0.92
TOPBP1-202ENST00000503338 RASGRP2Q7LDG7 609 aa9.3□□□□□ -0.92
TOPBP1-202ENST00000503338 LDHDQ86WU2 507 aa9.3□□□□□ -0.92
TOPBP1-202ENST00000503338 SPICE1Q8N0Z3 855 aa9.3□□□□□ -0.92
TOPBP1-202ENST00000503338 REXO1Q8N1G1 1221 aaKnown RBP9.3□□□□□ -0.92
TOPBP1-202ENST00000503338 SAMD3Q8N6K7 520 aa9.3□□□□□ -0.92
TOPBP1-202ENST00000503338 PRPF38AQ8NAV1 312 aaKnown RBP9.3□□□□□ -0.92
TOPBP1-202ENST00000503338 NAP1L4Q99733 375 aaKnown RBP9.3□□□□□ -0.92
TOPBP1-202ENST00000503338 MAF1Q9H063 256 aa9.3□□□□□ -0.92
TOPBP1-202ENST00000503338 RANBP17Q9H2T7 1088 aaKnown RBP9.3□□□□□ -0.92
TOPBP1-202ENST00000503338 RIC8AQ9NPQ8 531 aa9.3□□□□□ -0.92
TOPBP1-202ENST00000503338 PRR12Q9ULL5 1215 aa9.3□□□□□ -0.92
TOPBP1-202ENST00000503338 CLEC11AQ9Y240 323 aa9.3□□□□□ -0.92
TOPBP1-202ENST00000503338 PCDHA1Q9Y5I3 950 aa9.3□□□□□ -0.92
TOPBP1-202ENST00000503338 ZHX2Q9Y6X8 837 aa9.3□□□□□ -0.92
TOPBP1-202ENST00000503338 BAZ2BQ9UIF8 2168 aaKnown RBP9.3□□□□□ -0.92
TOPBP1-202ENST00000503338 DOCK1Q14185 1865 aa9.3□□□□□ -0.92
TOPBP1-202ENST00000503338 MYPNQ86TC9 1320 aa9.3□□□□□ -0.92
TOPBP1-202ENST00000503338 SSC5DA1L4H1 1573 aa9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 LAD1O00515 517 aa9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 CXCL11O14625 94 aa9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 FOSP01100 380 aaPredicted RBP9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 VCAM1P19320 739 aa9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 ME1P48163 572 aa9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 AP3B2Q13367 1082 aa9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 MTMR2Q13614 643 aa9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 VGLL4Q14135 290 aa9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 NONOQ15233 471 aaKnown RBP eCLIP9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 ZYXQ15942 572 aaKnown RBP9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 PIK3AP1Q6ZUJ8 805 aa9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 ERO1BQ86YB8 467 aa9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 OXER1Q8TDS5 423 aa9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 ZKSCAN4Q969J2 545 aaPredicted RBP9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 SHISA4Q96DD7 197 aa9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 NUP88Q99567 741 aaPredicted RBP9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 SLF1Q9BQI6 1058 aa9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 CPVLQ9H3G5 476 aa9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 PSTPIP2Q9H939 334 aa9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 PCDHA6Q9UN73 950 aa9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 MRPL11Q9Y3B7 192 aaKnown RBP9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 AFG3L2Q9Y4W6 797 aa9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 CTDP1Q9Y5B0 961 aaPredicted RBP9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 PCDHA8Q9Y5H6 950 aa9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 CLIC4Q9Y696 253 aa9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 GOLGB1Q14789 3259 aaKnown RBP9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 TCHHQ07283 1943 aa9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 ABCB11O95342 1321 aa9.29□□□□□ -0.92
TOPBP1-202ENST00000503338 ATAD5Q96QE3 1844 aa9.28□□□□□ -0.92
TOPBP1-202ENST00000503338 CUTAO60888 179 aa9.28□□□□□ -0.92
TOPBP1-202ENST00000503338 ZBED4O75132 1171 aa9.28□□□□□ -0.92
TOPBP1-202ENST00000503338 CEBPZQ03701 1054 aaKnown RBP9.28□□□□□ -0.92
TOPBP1-202ENST00000503338 TTLL12Q14166 644 aaPredicted RBP9.28□□□□□ -0.92
TOPBP1-202ENST00000503338 PTPAQ15257 358 aa9.28□□□□□ -0.92
TOPBP1-202ENST00000503338 TTC38Q5R3I4 469 aa9.28□□□□□ -0.92
TOPBP1-202ENST00000503338 ARL6IP4Q66PJ3 421 aaKnown RBP9.28□□□□□ -0.92
TOPBP1-202ENST00000503338 TYW1BQ6NUM6 668 aa9.28□□□□□ -0.92
TOPBP1-202ENST00000503338 CCDC73Q6ZRK6 1079 aa9.28□□□□□ -0.92
TOPBP1-202ENST00000503338 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.28□□□□□ -0.92
TOPBP1-202ENST00000503338 KRI1Q8N9T8 703 aaKnown RBP9.28□□□□□ -0.92
TOPBP1-202ENST00000503338 ZNF579Q8NAF0 562 aaKnown RBP9.28□□□□□ -0.92
TOPBP1-202ENST00000503338 GPT2Q8TD30 523 aa9.28□□□□□ -0.92
TOPBP1-202ENST00000503338 FERMT2Q96AC1 680 aa9.28□□□□□ -0.92
TOPBP1-202ENST00000503338 KIFC2Q96AC6 838 aa9.28□□□□□ -0.92
TOPBP1-202ENST00000503338 COA7Q96BR5 231 aa9.28□□□□□ -0.92
TOPBP1-202ENST00000503338 CHAMP1Q96JM3 812 aa9.28□□□□□ -0.92
TOPBP1-202ENST00000503338 GLIS2Q9BZE0 524 aaPredicted RBP9.28□□□□□ -0.92
TOPBP1-202ENST00000503338 EHMT1Q9H9B1 1298 aa9.28□□□□□ -0.92
TOPBP1-202ENST00000503338 EMILIN3Q9NT22 766 aa9.28□□□□□ -0.92
TOPBP1-202ENST00000503338 DDX19AQ9NUU7 478 aaKnown RBP9.28□□□□□ -0.92
TOPBP1-202ENST00000503338 MAP3K20Q9NYL2 800 aaKnown RBP9.28□□□□□ -0.92
TOPBP1-202ENST00000503338 PPP1R9AQ9ULJ8 1098 aa9.28□□□□□ -0.92
TOPBP1-202ENST00000503338 SNCAIPQ9Y6H5 919 aa9.28□□□□□ -0.92
TOPBP1-202ENST00000503338 MYH15Q9Y2K3 1946 aa9.27□□□□□ -0.93
TOPBP1-202ENST00000503338 POLR2AP24928 1970 aaKnown RBP9.27□□□□□ -0.93
TOPBP1-202ENST00000503338 SPDYE5A6NIY4 337 aa9.27□□□□□ -0.93
TOPBP1-202ENST00000503338 USP17L15C9J2P7 530 aa9.27□□□□□ -0.93
TOPBP1-202ENST00000503338 USP17L13C9JLJ4 530 aa9.27□□□□□ -0.93
TOPBP1-202ENST00000503338 USP17L11C9JVI0 530 aa9.27□□□□□ -0.93
TOPBP1-202ENST00000503338 USP17L18D6R9N7 530 aa9.27□□□□□ -0.93
TOPBP1-202ENST00000503338 USP17L22D6RA61 530 aa9.27□□□□□ -0.93
TOPBP1-202ENST00000503338 USP17L17D6RBQ6 530 aa9.27□□□□□ -0.93
TOPBP1-202ENST00000503338 USP17L19D6RCP7 530 aa9.27□□□□□ -0.93
TOPBP1-202ENST00000503338 USP17L20D6RJB6 530 aa9.27□□□□□ -0.93
TOPBP1-202ENST00000503338 PIK3CDO00329 1044 aa9.27□□□□□ -0.93
TOPBP1-202ENST00000503338 PPP1R11O60927 126 aaPredicted RBP9.27□□□□□ -0.93
TOPBP1-202ENST00000503338 FLOT1O75955 427 aa9.27□□□□□ -0.93
TOPBP1-202ENST00000503338 ICAM1P05362 532 aa9.27□□□□□ -0.93
TOPBP1-202ENST00000503338 GCFC2P16383 781 aaKnown RBP9.27□□□□□ -0.93
TOPBP1-202ENST00000503338 CMA1P23946 247 aa9.27□□□□□ -0.93
TOPBP1-202ENST00000503338 CLK2P49760 499 aaKnown RBP9.27□□□□□ -0.93
TOPBP1-202ENST00000503338 TOB1P50616 345 aaPredicted RBP9.27□□□□□ -0.93
TOPBP1-202ENST00000503338 OAZ1P54368 228 aa9.27□□□□□ -0.93
TOPBP1-202ENST00000503338 USP17L24Q0WX57 530 aa9.27□□□□□ -0.93
TOPBP1-202ENST00000503338 PABPC4Q13310 644 aaKnown RBP eCLIP9.27□□□□□ -0.939e-6■■■■□ 24.7
TOPBP1-202ENST00000503338 PPIL2Q13356 520 aa9.27□□□□□ -0.93
TOPBP1-202ENST00000503338 PRKG1Q13976 671 aa9.27□□□□□ -0.93
TOPBP1-202ENST00000503338 KIAA1755Q5JYT7 1200 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms