RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 RASSF8Q8NHQ8 419 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 CCDC51Q96ER9 411 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 GPR101Q96P66 508 aaPredicted RBP13.53□□□□□ -0.24
NUP54-202ENST00000502850 INTS13Q9NVM9 706 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 POLLQ9UGP5 575 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 PPP1R3GB7ZBB8 358 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 TMEM232C9JQI7 657 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 CYTH3O43739 400 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 NPR1P16066 1061 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 ALDH1B1P30837 517 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 HOXA7P31268 230 aaPredicted RBP13.53□□□□□ -0.24
NUP54-202ENST00000502850 TGFB2P61812 414 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 ETF1P62495 437 aaKnown RBP13.53□□□□□ -0.24
NUP54-202ENST00000502850 PAK1Q13153 545 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 NOM1Q5C9Z4 860 aaKnown RBP13.53□□□□□ -0.24
NUP54-202ENST00000502850 RRAGBQ5VZM2 374 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 PPP1R18Q6NYC8 613 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 PANX2Q96RD6 677 aa13.53□□□□□ -0.24
NUP54-202ENST00000502850 CCDC94Q9BW85 323 aaPredicted RBP13.53□□□□□ -0.24
NUP54-202ENST00000502850 SRRTQ9BXP5 876 aaKnown RBP13.53□□□□□ -0.24
NUP54-202ENST00000502850 AKR1B15C9JRZ8 316 aaPredicted RBP13.52□□□□□ -0.25
NUP54-202ENST00000502850 RPN1P04843 607 aaKnown RBP13.52□□□□□ -0.25
NUP54-202ENST00000502850 OR52Z1P0C646 297 aa13.52□□□□□ -0.25
NUP54-202ENST00000502850 NCBP1Q09161 790 aaKnown RBP13.52□□□□□ -0.25
NUP54-202ENST00000502850 KLHL10Q6JEL2 608 aa13.52□□□□□ -0.25
NUP54-202ENST00000502850 CNGA4Q8IV77 575 aa13.52□□□□□ -0.25
NUP54-202ENST00000502850 ZC3H12CQ9C0D7 883 aaKnown RBP13.52□□□□□ -0.25
NUP54-202ENST00000502850 L2HGDHQ9H9P8 463 aa13.52□□□□□ -0.25
NUP54-202ENST00000502850 SAMSN1Q9NSI8 373 aaKnown RBP13.52□□□□□ -0.25
NUP54-202ENST00000502850 DAGLAQ9Y4D2 1042 aa13.52□□□□□ -0.25
NUP54-202ENST00000502850 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.52□□□□□ -0.25
NUP54-202ENST00000502850 UTRNP46939 3433 aa13.52□□□□□ -0.25
NUP54-202ENST00000502850 PDE6BP35913 854 aa13.51□□□□□ -0.25
NUP54-202ENST00000502850 IL17AQ16552 155 aa13.51□□□□□ -0.25
NUP54-202ENST00000502850 INF2Q27J81 1249 aa13.51□□□□□ -0.25
NUP54-202ENST00000502850 NEK8Q86SG6 692 aa13.51□□□□□ -0.25
NUP54-202ENST00000502850 NOC3LQ8WTT2 800 aaKnown RBP13.51□□□□□ -0.25
NUP54-202ENST00000502850 CEP95Q96GE4 821 aa13.51□□□□□ -0.25
NUP54-202ENST00000502850 ADD3Q9UEY8 706 aaKnown RBP13.51□□□□□ -0.25
NUP54-202ENST00000502850 LIMA1Q9UHB6 759 aaKnown RBP13.51□□□□□ -0.25
NUP54-202ENST00000502850 CTNND2Q9UQB3 1225 aa13.51□□□□□ -0.25
NUP54-202ENST00000502850 SMCO2A6NFE2 343 aa13.5□□□□□ -0.25
NUP54-202ENST00000502850 HLA-DOAP06340 250 aa13.5□□□□□ -0.25
NUP54-202ENST00000502850 CD44P16070 742 aaKnown RBP13.5□□□□□ -0.25
NUP54-202ENST00000502850 GTF2IP78347 998 aa13.5□□□□□ -0.25
NUP54-202ENST00000502850 TYW1BQ6NUM6 668 aa13.5□□□□□ -0.25
NUP54-202ENST00000502850 TMEM139Q8IV31 216 aa13.5□□□□□ -0.25
NUP54-202ENST00000502850 REXO1Q8N1G1 1221 aaKnown RBP13.5□□□□□ -0.25
NUP54-202ENST00000502850 TC2NQ8N9U0 490 aa13.5□□□□□ -0.25
NUP54-202ENST00000502850 RIOX1Q9H6W3 641 aa13.5□□□□□ -0.25
NUP54-202ENST00000502850 GREB1LQ9C091 1923 aaPredicted RBP13.5□□□□□ -0.25
NUP54-202ENST00000502850 H7C1D1 291 aa13.5□□□□□ -0.25
NUP54-202ENST00000502850 VEGFAP15692 232 aaPredicted RBP13.5□□□□□ -0.25
NUP54-202ENST00000502850 AMPD3Q01432 767 aa13.5□□□□□ -0.25
NUP54-202ENST00000502850 GABPAQ06546 454 aa13.5□□□□□ -0.25
NUP54-202ENST00000502850 HHIPL2Q6UWX4 724 aa13.5□□□□□ -0.25
NUP54-202ENST00000502850 IGSF22Q8N9C0 903 aa13.5□□□□□ -0.25
NUP54-202ENST00000502850 MED15Q96RN5 788 aa13.5□□□□□ -0.25
NUP54-202ENST00000502850 RAB34Q9BZG1 259 aa13.5□□□□□ -0.25
NUP54-202ENST00000502850 MTMR4Q9NYA4 1195 aa13.5□□□□□ -0.25
NUP54-202ENST00000502850 PPP2R2CQ9Y2T4 447 aa13.5□□□□□ -0.25
NUP54-202ENST00000502850 COL11A2P13942 1736 aaPredicted RBP13.49□□□□□ -0.25
NUP54-202ENST00000502850 GOLGB1Q14789 3259 aaKnown RBP13.49□□□□□ -0.25
NUP54-202ENST00000502850 LRRC10BA6NIK2 292 aa13.49□□□□□ -0.25
NUP54-202ENST00000502850 PSMA7O14818 248 aa13.49□□□□□ -0.25
NUP54-202ENST00000502850 TTLL1O95922 423 aa13.49□□□□□ -0.25
NUP54-202ENST00000502850 PDHBP11177 359 aa13.49□□□□□ -0.25
NUP54-202ENST00000502850 PBX1P40424 430 aa13.49□□□□□ -0.25
NUP54-202ENST00000502850 KARSQ15046 597 aaKnown RBP13.49□□□□□ -0.25
NUP54-202ENST00000502850 SLC35G1Q2M3R5 365 aa13.49□□□□□ -0.25
NUP54-202ENST00000502850 SYT10Q6XYQ8 523 aa13.49□□□□□ -0.25
NUP54-202ENST00000502850 APTXQ7Z2E3 356 aaKnown RBP13.49□□□□□ -0.25
NUP54-202ENST00000502850 RASGRP4Q8TDF6 673 aa13.49□□□□□ -0.25
NUP54-202ENST00000502850 NELFBQ8WX92 580 aa13.49□□□□□ -0.25
NUP54-202ENST00000502850 FEZ1Q99689 392 aa13.49□□□□□ -0.25
NUP54-202ENST00000502850 NAP1L4Q99733 375 aaKnown RBP13.49□□□□□ -0.25
NUP54-202ENST00000502850 GLT8D2Q9H1C3 349 aa13.49□□□□□ -0.25
NUP54-202ENST00000502850 BLZF1Q9H2G9 400 aa13.49□□□□□ -0.25
NUP54-202ENST00000502850 KBTBD4Q9NVX7 518 aa13.49□□□□□ -0.25
NUP54-202ENST00000502850 SERPINB13Q9UIV8 391 aa13.49□□□□□ -0.25
NUP54-202ENST00000502850 IGKV6D-41A0A0C4DH26 115 aa13.48□□□□□ -0.25
NUP54-202ENST00000502850 G3V3G9 751 aa13.48□□□□□ -0.25
NUP54-202ENST00000502850 CCNT1O60563 726 aaKnown RBP13.48□□□□□ -0.25
NUP54-202ENST00000502850 RHOBTB3O94955 611 aa13.48□□□□□ -0.25
NUP54-202ENST00000502850 CCDC175P0C221 793 aa13.48□□□□□ -0.25
NUP54-202ENST00000502850 GOLGA8HP0CJ92 632 aa13.48□□□□□ -0.25
NUP54-202ENST00000502850 SNHG28P0DPA3 235 aa13.48□□□□□ -0.25
NUP54-202ENST00000502850 SRGNP10124 158 aa13.48□□□□□ -0.25
NUP54-202ENST00000502850 DPEP1P16444 411 aa13.48□□□□□ -0.25
NUP54-202ENST00000502850 EEF1GP26641 437 aaKnown RBP13.48□□□□□ -0.25
NUP54-202ENST00000502850 ADCY7P51828 1080 aa13.48□□□□□ -0.25
NUP54-202ENST00000502850 STX17P56962 302 aa13.48□□□□□ -0.25
NUP54-202ENST00000502850 FKBP1AP62942 108 aaKnown RBP13.48□□□□□ -0.25
NUP54-202ENST00000502850 TMEM266Q2M3C6 531 aa13.48□□□□□ -0.25
NUP54-202ENST00000502850 HSP90AA4PQ58FG1 418 aa13.48□□□□□ -0.25
NUP54-202ENST00000502850 GPATCH4Q5T3I0 446 aaKnown RBP13.48□□□□□ -0.25
NUP54-202ENST00000502850 DCAF8Q5TAQ9 597 aa13.48□□□□□ -0.25
NUP54-202ENST00000502850 USP17L2Q6R6M4 530 aa13.48□□□□□ -0.25
NUP54-202ENST00000502850 DPP8Q6V1X1 898 aaPredicted RBP13.48□□□□□ -0.25
NUP54-202ENST00000502850 CABP7Q86V35 215 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms