RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 PEX10O60683 326 aa19.87■□□□□ 0.77
HDAC6-235ENST00000495515 TRAF1Q13077 416 aa19.87■□□□□ 0.77
HDAC6-235ENST00000495515 WDR78Q5VTH9 848 aa19.87■□□□□ 0.77
HDAC6-235ENST00000495515 CCDC174Q6PII3 467 aa19.87■□□□□ 0.77
HDAC6-235ENST00000495515 NCAPG2Q86XI2 1143 aa19.87■□□□□ 0.77
HDAC6-235ENST00000495515 RAB11FIP4Q86YS3 637 aa19.87■□□□□ 0.77
HDAC6-235ENST00000495515 ZNF274Q96GC6 653 aaPredicted RBP19.87■□□□□ 0.77
HDAC6-235ENST00000495515 RAVER2Q9HCJ3 691 aaKnown RBP19.87■□□□□ 0.77
HDAC6-235ENST00000495515 VAT1LQ9HCJ6 419 aa19.87■□□□□ 0.77
HDAC6-235ENST00000495515 IVNS1ABPQ9Y6Y0 642 aa19.87■□□□□ 0.77
HDAC6-235ENST00000495515 ICAM1P05362 532 aa19.86■□□□□ 0.77
HDAC6-235ENST00000495515 ERCC3P19447 782 aa19.86■□□□□ 0.77
HDAC6-235ENST00000495515 AK2P54819 239 aa19.86■□□□□ 0.77
HDAC6-235ENST00000495515 CDC37Q16543 378 aaPredicted RBP19.86■□□□□ 0.77
HDAC6-235ENST00000495515 TKFCQ3LXA3 575 aa19.86■□□□□ 0.77
HDAC6-235ENST00000495515 KIF2CQ99661 725 aa19.86■□□□□ 0.77
HDAC6-235ENST00000495515 SPZ1Q9BXG8 430 aa19.86■□□□□ 0.77
HDAC6-235ENST00000495515 CPVLQ9H3G5 476 aa19.86■□□□□ 0.77
HDAC6-235ENST00000495515 RIOX1Q9H6W3 641 aa19.86■□□□□ 0.77
HDAC6-235ENST00000495515 JMJD4Q9H9V9 463 aa19.86■□□□□ 0.77
HDAC6-235ENST00000495515 CCPG1Q9ULG6 757 aa19.86■□□□□ 0.77
HDAC6-235ENST00000495515 ST18O60284 1047 aa19.85■□□□□ 0.77
HDAC6-235ENST00000495515 PDIA3P30101 505 aaKnown RBP19.85■□□□□ 0.77
HDAC6-235ENST00000495515 SLC4A3P48751 1232 aa19.85■□□□□ 0.77
HDAC6-235ENST00000495515 PRMT2P55345 433 aa19.85■□□□□ 0.77
HDAC6-235ENST00000495515 TMTC3Q6ZXV5 915 aa19.85■□□□□ 0.77
HDAC6-235ENST00000495515 PLEKHH3Q7Z736 793 aa19.85■□□□□ 0.77
HDAC6-235ENST00000495515 CHST13Q8NET6 341 aa19.85■□□□□ 0.77
HDAC6-235ENST00000495515 TRIM47Q96LD4 638 aa19.85■□□□□ 0.77
HDAC6-235ENST00000495515 PORCNQ9H237 461 aa19.85■□□□□ 0.77
HDAC6-235ENST00000495515 FBXO40Q9UH90 709 aa19.85■□□□□ 0.77
HDAC6-235ENST00000495515 RLFQ13129 1914 aa19.84■□□□□ 0.77
HDAC6-235ENST00000495515 STRNO43815 780 aa19.84■□□□□ 0.77
HDAC6-235ENST00000495515 ECM2O94769 699 aaPredicted RBP19.84■□□□□ 0.77
HDAC6-235ENST00000495515 SNAP25P60880 206 aa19.84■□□□□ 0.77
HDAC6-235ENST00000495515 CPLX2Q6PUV4 134 aaKnown RBP19.84■□□□□ 0.77
HDAC6-235ENST00000495515 GPR142Q7Z601 462 aa19.84■□□□□ 0.77
HDAC6-235ENST00000495515 CTU1Q7Z7A3 348 aaKnown RBP19.84■□□□□ 0.77
HDAC6-235ENST00000495515 RRP36Q96EU6 259 aaKnown RBP19.84■□□□□ 0.77
HDAC6-235ENST00000495515 ARHGAP39Q9C0H5 1083 aa19.84■□□□□ 0.77
HDAC6-235ENST00000495515 SEC63Q9UGP8 760 aaKnown RBP19.84■□□□□ 0.77
HDAC6-235ENST00000495515 HPS5Q9UPZ3 1129 aa19.84■□□□□ 0.77
HDAC6-235ENST00000495515 TRIM17Q9Y577 477 aa19.84■□□□□ 0.77
HDAC6-235ENST00000495515 A0A0G2JMZ2 1700 aa19.84■□□□□ 0.77
HDAC6-235ENST00000495515 NID2Q14112 1375 aa19.83■□□□□ 0.77
HDAC6-235ENST00000495515 ZNF536O15090 1300 aa19.83■□□□□ 0.77
HDAC6-235ENST00000495515 ZBTB5O15062 677 aa19.83■□□□□ 0.77
HDAC6-235ENST00000495515 PLEKHA8P1O95397 391 aa19.83■□□□□ 0.77
HDAC6-235ENST00000495515 QRICH1Q2TAL8 776 aa19.83■□□□□ 0.77
HDAC6-235ENST00000495515 HOMER1Q86YM7 354 aa19.83■□□□□ 0.77
HDAC6-235ENST00000495515 SRBD1Q8N5C6 995 aaKnown RBP19.83■□□□□ 0.77
HDAC6-235ENST00000495515 SOCS4Q8WXH5 440 aa19.83■□□□□ 0.77
HDAC6-235ENST00000495515 MTMR8Q96EF0 704 aa19.83■□□□□ 0.77
HDAC6-235ENST00000495515 AGBL1Q96MI9 1066 aa19.83■□□□□ 0.77
HDAC6-235ENST00000495515 AMNQ9BXJ7 453 aa19.83■□□□□ 0.77
HDAC6-235ENST00000495515 SLKQ9H2G2 1235 aaPredicted RBP19.83■□□□□ 0.77
HDAC6-235ENST00000495515 PNMA6FA0A0J9YX94 578 aa19.82■□□□□ 0.76
HDAC6-235ENST00000495515 CPLX1O14810 134 aa19.82■□□□□ 0.76
HDAC6-235ENST00000495515 CYTH3O43739 400 aa19.82■□□□□ 0.76
HDAC6-235ENST00000495515 FCER1AP12319 257 aa19.82■□□□□ 0.76
HDAC6-235ENST00000495515 ALAS1P13196 640 aa19.82■□□□□ 0.76
HDAC6-235ENST00000495515 KCTD2Q14681 263 aa19.82■□□□□ 0.76
HDAC6-235ENST00000495515 PKN2Q16513 984 aaKnown RBP19.82■□□□□ 0.76
HDAC6-235ENST00000495515 OTOP1Q7RTM1 612 aa19.82■□□□□ 0.76
HDAC6-235ENST00000495515 NBPF11Q86T75 865 aa19.82■□□□□ 0.76
HDAC6-235ENST00000495515 FBXO11Q86XK2 927 aa19.82■□□□□ 0.76
HDAC6-235ENST00000495515 ABRAQ8N0Z2 381 aa19.82■□□□□ 0.76
HDAC6-235ENST00000495515 ABHD8Q96I13 439 aa19.82■□□□□ 0.76
HDAC6-235ENST00000495515 PIGSQ96S52 555 aa19.82■□□□□ 0.76
HDAC6-235ENST00000495515 NUDT12Q9BQG2 462 aa19.82■□□□□ 0.76
HDAC6-235ENST00000495515 LARP6Q9BRS8 491 aaKnown RBP19.82■□□□□ 0.76
HDAC6-235ENST00000495515 ACAD9Q9H845 621 aa19.82■□□□□ 0.76
HDAC6-235ENST00000495515 SRRDQ9UH36 339 aa19.82■□□□□ 0.76
HDAC6-235ENST00000495515 TPCN1Q9ULQ1 816 aa19.82■□□□□ 0.76
HDAC6-235ENST00000495515 PARP14Q460N5 1801 aa19.81■□□□□ 0.76
HDAC6-235ENST00000495515 SLC15A5A6NIM6 579 aa19.81■□□□□ 0.76
HDAC6-235ENST00000495515 PTPREP23469 700 aa19.81■□□□□ 0.76
HDAC6-235ENST00000495515 CTGFP29279 349 aa19.81■□□□□ 0.76
HDAC6-235ENST00000495515 CDC27P30260 824 aa19.81■□□□□ 0.76
HDAC6-235ENST00000495515 ADD1P35611 737 aaKnown RBP19.81■□□□□ 0.76
HDAC6-235ENST00000495515 CCT2P78371 535 aaKnown RBP19.81■□□□□ 0.76
HDAC6-235ENST00000495515 NOL8Q76FK4 1167 aaKnown RBP19.81■□□□□ 0.76
HDAC6-235ENST00000495515 CCDC82Q8N4S0 544 aa19.81■□□□□ 0.76
HDAC6-235ENST00000495515 TRERF1Q96PN7 1200 aa19.81■□□□□ 0.76
HDAC6-235ENST00000495515 HOMER2Q9NSB8 354 aa19.81■□□□□ 0.76
HDAC6-235ENST00000495515 RNF146Q9NTX7 359 aa19.81■□□□□ 0.76
HDAC6-235ENST00000495515 FAM217BQ9NTX9 383 aaPredicted RBP19.81■□□□□ 0.76
HDAC6-235ENST00000495515 SLC5A4Q9NY91 659 aa19.81■□□□□ 0.76
HDAC6-235ENST00000495515 RBM27Q9P2N5 1060 aaKnown RBP19.81■□□□□ 0.76
HDAC6-235ENST00000495515 LIMCH1Q9UPQ0 1083 aa19.81■□□□□ 0.76
HDAC6-235ENST00000495515 RIPK3Q9Y572 518 aa19.81■□□□□ 0.76
HDAC6-235ENST00000495515 ABCB11O95342 1321 aa19.8■□□□□ 0.76
HDAC6-235ENST00000495515 PFKFB2O60825 505 aa19.8■□□□□ 0.76
HDAC6-235ENST00000495515 AKAP17AQ02040 695 aaKnown RBP19.8■□□□□ 0.76
HDAC6-235ENST00000495515 STK3Q13188 491 aa19.8■□□□□ 0.76
HDAC6-235ENST00000495515 CMTR1Q8N1G2 835 aaKnown RBP19.8■□□□□ 0.76
HDAC6-235ENST00000495515 ZSCAN31Q96LW9 406 aaPredicted RBP19.8■□□□□ 0.76
HDAC6-235ENST00000495515 MMP19Q99542 508 aa19.8■□□□□ 0.76
HDAC6-235ENST00000495515 MRPL11Q9Y3B7 192 aaKnown RBP19.8■□□□□ 0.76
HDAC6-235ENST00000495515 CDKL5O76039 1030 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms