RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 ZNF507Q8TCN5 953 aa13.03□□□□□ -0.32
HDAC4-210ENST00000493582 EPB41L5Q9HCM4 733 aa13.03□□□□□ -0.32
HDAC4-210ENST00000493582 ZNHIT6Q9NWK9 470 aaKnown RBP13.03□□□□□ -0.32
HDAC4-210ENST00000493582 STK36Q9NRP7 1315 aa13.03□□□□□ -0.32
HDAC4-210ENST00000493582 TMEM2Q9UHN6 1383 aa13.03□□□□□ -0.32
HDAC4-210ENST00000493582 UBR1Q8IWV7 1749 aa13.02□□□□□ -0.32
HDAC4-210ENST00000493582 A0A1B0GUA9 196 aa13.02□□□□□ -0.32
HDAC4-210ENST00000493582 LGALS16A8MUM7 142 aa13.02□□□□□ -0.32
HDAC4-210ENST00000493582 TMCO5BA8MYB1 307 aa13.02□□□□□ -0.32
HDAC4-210ENST00000493582 BIRC2Q13490 618 aa13.02□□□□□ -0.32
HDAC4-210ENST00000493582 MEA1Q16626 185 aa13.02□□□□□ -0.32
HDAC4-210ENST00000493582 QPCTQ16769 361 aa13.02□□□□□ -0.32
HDAC4-210ENST00000493582 ZNF662Q6ZS27 426 aa13.02□□□□□ -0.32
HDAC4-210ENST00000493582 FMNL3Q8IVF7 1028 aa13.02□□□□□ -0.32
HDAC4-210ENST00000493582 NUP133Q8WUM0 1156 aa13.02□□□□□ -0.32
HDAC4-210ENST00000493582 TBC1D31Q96DN5 1066 aa13.02□□□□□ -0.32
HDAC4-210ENST00000493582 TBC1D2BQ9UPU7 963 aa13.02□□□□□ -0.32
HDAC4-210ENST00000493582 GBP2P32456 591 aaPredicted RBP13.02□□□□□ -0.33
HDAC4-210ENST00000493582 GUCY2DQ02846 1103 aa13.02□□□□□ -0.33
HDAC4-210ENST00000493582 ITGB3BPQ13352 177 aaPredicted RBP13.02□□□□□ -0.33
HDAC4-210ENST00000493582 ACCSLQ4AC99 568 aa13.02□□□□□ -0.33
HDAC4-210ENST00000493582 RRP12Q5JTH9 1297 aaKnown RBP13.02□□□□□ -0.33
HDAC4-210ENST00000493582 ANKRD13CQ8N6S4 541 aa13.02□□□□□ -0.33
HDAC4-210ENST00000493582 TRIM58Q8NG06 486 aa13.02□□□□□ -0.33
HDAC4-210ENST00000493582 SHISA4Q96DD7 197 aa13.02□□□□□ -0.33
HDAC4-210ENST00000493582 ATP6V1G3Q96LB4 118 aa13.02□□□□□ -0.33
HDAC4-210ENST00000493582 PCMTD1Q96MG8 357 aaPredicted RBP13.02□□□□□ -0.33
HDAC4-210ENST00000493582 RASSF10A6NK89 507 aa13.02□□□□□ -0.33
HDAC4-210ENST00000493582 H7C1W4 665 aa13.02□□□□□ -0.33
HDAC4-210ENST00000493582 DNA2P51530 1060 aa13.02□□□□□ -0.33
HDAC4-210ENST00000493582 RTN1Q16799 776 aa13.02□□□□□ -0.33
HDAC4-210ENST00000493582 TLDC1Q6P9B6 456 aa13.02□□□□□ -0.33
HDAC4-210ENST00000493582 CRACR2BQ8N4Y2 399 aaPredicted RBP13.02□□□□□ -0.33
HDAC4-210ENST00000493582 TACC1O75410 805 aa13.01□□□□□ -0.33
HDAC4-210ENST00000493582 TBC1D8BQ0IIM8 1120 aa13.01□□□□□ -0.33
HDAC4-210ENST00000493582 MAATS1Q7Z4T9 603 aa13.01□□□□□ -0.33
HDAC4-210ENST00000493582 HOMEZQ8IX15 550 aa13.01□□□□□ -0.33
HDAC4-210ENST00000493582 CCDC42Q96M95 316 aa13.01□□□□□ -0.33
HDAC4-210ENST00000493582 TACC3Q9Y6A5 838 aa13.01□□□□□ -0.33
HDAC4-210ENST00000493582 MYO5AQ9Y4I1 1855 aaKnown RBP13.01□□□□□ -0.33
HDAC4-210ENST00000493582 MYH10P35580 1976 aa13.01□□□□□ -0.33
HDAC4-210ENST00000493582 NUTM2BA6NNL0 878 aaPredicted RBP13.01□□□□□ -0.33
HDAC4-210ENST00000493582 NUTM2EB1AL46 878 aaPredicted RBP13.01□□□□□ -0.33
HDAC4-210ENST00000493582 H7C1D1 291 aa13.01□□□□□ -0.33
HDAC4-210ENST00000493582 PRDM1O75626 825 aa13.01□□□□□ -0.33
HDAC4-210ENST00000493582 DEXIO95424 95 aa13.01□□□□□ -0.33
HDAC4-210ENST00000493582 ERCC3P19447 782 aa13.01□□□□□ -0.33
HDAC4-210ENST00000493582 TMOD1P28289 359 aa13.01□□□□□ -0.33
HDAC4-210ENST00000493582 SPA17Q15506 151 aa13.01□□□□□ -0.33
HDAC4-210ENST00000493582 ZNF658Q5TYW1 1059 aaPredicted RBP13.01□□□□□ -0.33
HDAC4-210ENST00000493582 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.01□□□□□ -0.33
HDAC4-210ENST00000493582 LMO7Q8WWI1 1683 aa13□□□□□ -0.33
HDAC4-210ENST00000493582 A0A1W2PQC6 194 aa13□□□□□ -0.33
HDAC4-210ENST00000493582 IDH1O75874 414 aaKnown RBP13□□□□□ -0.33
HDAC4-210ENST00000493582 PDE6BP35913 854 aa13□□□□□ -0.33
HDAC4-210ENST00000493582 LIFRP42702 1097 aa13□□□□□ -0.33
HDAC4-210ENST00000493582 PAFAH1B1P43034 410 aa13□□□□□ -0.33
HDAC4-210ENST00000493582 ITIH3Q06033 890 aa13□□□□□ -0.33
HDAC4-210ENST00000493582 KCTD19Q17RG1 926 aaPredicted RBP13□□□□□ -0.33
HDAC4-210ENST00000493582 ANKRD20A8PQ5CZ79 823 aa13□□□□□ -0.33
HDAC4-210ENST00000493582 IFT20Q8IY31 132 aa13□□□□□ -0.33
HDAC4-210ENST00000493582 LTN1O94822 1766 aa13□□□□□ -0.33
HDAC4-210ENST00000493582 HEXIM1O94992 359 aaKnown RBP13□□□□□ -0.33
HDAC4-210ENST00000493582 DRP2Q13474 957 aa13□□□□□ -0.33
HDAC4-210ENST00000493582 TCIRG1Q13488 830 aa13□□□□□ -0.33
HDAC4-210ENST00000493582 EMC10Q5UCC4 262 aa13□□□□□ -0.33
HDAC4-210ENST00000493582 ZNF572Q7Z3I7 529 aaPredicted RBP13□□□□□ -0.33
HDAC4-210ENST00000493582 CCDC170Q8IYT3 715 aa13□□□□□ -0.33
HDAC4-210ENST00000493582 IFIH1Q9BYX4 1025 aaKnown RBP13□□□□□ -0.33
HDAC4-210ENST00000493582 ACTR5Q9H9F9 607 aaPredicted RBP13□□□□□ -0.33
HDAC4-210ENST00000493582 LEMD3Q9Y2U8 911 aa13□□□□□ -0.33
HDAC4-210ENST00000493582 DIP2AQ14689 1571 aa13□□□□□ -0.33
HDAC4-210ENST00000493582 ANKRD18BA2A2Z9 1011 aa13□□□□□ -0.33
HDAC4-210ENST00000493582 GMNCA6NCL1 334 aa13□□□□□ -0.33
HDAC4-210ENST00000493582 RPN1P04843 607 aaKnown RBP13□□□□□ -0.33
HDAC4-210ENST00000493582 SCTRP47872 440 aa13□□□□□ -0.33
HDAC4-210ENST00000493582 PTGDRQ13258 359 aa13□□□□□ -0.33
HDAC4-210ENST00000493582 TYW1BQ6NUM6 668 aa13□□□□□ -0.33
HDAC4-210ENST00000493582 OR2W6PQ8NHA6 318 aa13□□□□□ -0.33
HDAC4-210ENST00000493582 TTYH3Q9C0H2 523 aa13□□□□□ -0.33
HDAC4-210ENST00000493582 GGA2Q9UJY4 613 aa13□□□□□ -0.33
HDAC4-210ENST00000493582 HYOU1Q9Y4L1 999 aa13□□□□□ -0.33
HDAC4-210ENST00000493582 RGPD2P0DJD1 1756 aa12.99□□□□□ -0.33
HDAC4-210ENST00000493582 USP54Q70EL1 1684 aa12.99□□□□□ -0.33
HDAC4-210ENST00000493582 TCP1P17987 556 aaKnown RBP12.99□□□□□ -0.33
HDAC4-210ENST00000493582 RNASE9P60153 205 aaKnown RBP12.99□□□□□ -0.33
HDAC4-210ENST00000493582 SF3A3Q12874 501 aaKnown RBP eCLIP12.99□□□□□ -0.337e-8■■□□□ 13.8
HDAC4-210ENST00000493582 RUBCNQ92622 972 aa12.99□□□□□ -0.33
HDAC4-210ENST00000493582 ATP6V0A4Q9HBG4 840 aa12.99□□□□□ -0.33
HDAC4-210ENST00000493582 SALL4Q9UJQ4 1053 aa12.99□□□□□ -0.33
HDAC4-210ENST00000493582 PLAAQ9Y263 795 aa12.99□□□□□ -0.33
HDAC4-210ENST00000493582 PCDHA13Q9Y5I0 950 aa12.99□□□□□ -0.33
HDAC4-210ENST00000493582 ECM29Q5VYK3 1845 aa12.99□□□□□ -0.33
HDAC4-210ENST00000493582 BCL9LQ86UU0 1499 aa12.99□□□□□ -0.33
HDAC4-210ENST00000493582 NKRFO15226 690 aaKnown RBP eCLIP12.99□□□□□ -0.339e-7■■■□□ 17.7
HDAC4-210ENST00000493582 ADD2P35612 726 aa12.99□□□□□ -0.33
HDAC4-210ENST00000493582 INHBEP58166 350 aa12.99□□□□□ -0.33
HDAC4-210ENST00000493582 PDXDC2PQ6P474 469 aa12.99□□□□□ -0.33
HDAC4-210ENST00000493582 CCDC50Q8IVM0 306 aa12.99□□□□□ -0.33
HDAC4-210ENST00000493582 CEP120Q8N960 986 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms