RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 NAP1L4Q99733 375 aaKnown RBP11.09□□□□□ -0.63
USP54-214ENST00000492357 ZCCHC17Q9NP64 241 aaKnown RBP11.09□□□□□ -0.63
USP54-214ENST00000492357 POLR3EQ9NVU0 708 aa11.09□□□□□ -0.63
USP54-214ENST00000492357 PPP1R9AQ9ULJ8 1098 aa11.09□□□□□ -0.63
USP54-214ENST00000492357 NOL7Q9UMY1 257 aaKnown RBP11.09□□□□□ -0.63
USP54-214ENST00000492357 ADAMTS5Q9UNA0 930 aa11.09□□□□□ -0.63
USP54-214ENST00000492357 SCAF8Q9UPN6 1271 aaKnown RBP11.09□□□□□ -0.63
USP54-214ENST00000492357 ABCB11O95342 1321 aa11.09□□□□□ -0.63
USP54-214ENST00000492357 PIK3CDO00329 1044 aa11.08□□□□□ -0.64
USP54-214ENST00000492357 IRF6O14896 467 aa11.08□□□□□ -0.64
USP54-214ENST00000492357 YEATS4O95619 227 aa11.08□□□□□ -0.64
USP54-214ENST00000492357 ICAM1P05362 532 aa11.08□□□□□ -0.64
USP54-214ENST00000492357 MCM4P33991 863 aa11.08□□□□□ -0.64
USP54-214ENST00000492357 COPB2P35606 906 aa11.08□□□□□ -0.64
USP54-214ENST00000492357 FSTL1Q12841 308 aa11.08□□□□□ -0.64
USP54-214ENST00000492357 AP3B2Q13367 1082 aa11.08□□□□□ -0.64
USP54-214ENST00000492357 SNAPC2Q13487 334 aa11.08□□□□□ -0.64
USP54-214ENST00000492357 COG2Q14746 738 aa11.08□□□□□ -0.64
USP54-214ENST00000492357 QRICH1Q2TAL8 776 aa11.08□□□□□ -0.64
USP54-214ENST00000492357 SKOR2Q2VWA4 1001 aaPredicted RBP11.08□□□□□ -0.64
USP54-214ENST00000492357 TKFCQ3LXA3 575 aa11.08□□□□□ -0.64
USP54-214ENST00000492357 MCTP1Q6DN14 999 aa11.08□□□□□ -0.64
USP54-214ENST00000492357 CATSPERGQ6ZRH7 1159 aa11.08□□□□□ -0.64
USP54-214ENST00000492357 HEATR3Q7Z4Q2 680 aa11.08□□□□□ -0.64
USP54-214ENST00000492357 BLIDQ8IZY5 108 aa11.08□□□□□ -0.64
USP54-214ENST00000492357 CMTR1Q8N1G2 835 aaKnown RBP11.08□□□□□ -0.64
USP54-214ENST00000492357 CUL5Q93034 780 aa11.08□□□□□ -0.64
USP54-214ENST00000492357 SLC10A4Q96EP9 437 aa11.08□□□□□ -0.64
USP54-214ENST00000492357 UBA5Q9GZZ9 404 aa11.08□□□□□ -0.64
USP54-214ENST00000492357 SLC38A10Q9HBR0 1119 aa11.08□□□□□ -0.64
USP54-214ENST00000492357 RIC8AQ9NPQ8 531 aa11.08□□□□□ -0.64
USP54-214ENST00000492357 CEP131Q9UPN4 1083 aa11.08□□□□□ -0.64
USP54-214ENST00000492357 MRPL11Q9Y3B7 192 aaKnown RBP11.08□□□□□ -0.64
USP54-214ENST00000492357 A0A0G2JMZ2 1700 aa11.08□□□□□ -0.64
USP54-214ENST00000492357 PASKQ96RG2 1323 aa11.08□□□□□ -0.64
USP54-214ENST00000492357 TRIM75PA6NK02 468 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 M0R2N6 131 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 RAD21O60216 631 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 ZBED4O75132 1171 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 TOMM70O94826 608 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 POTEIP0CG38 1075 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 POTEJP0CG39 1038 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 CETPP11597 493 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 NASPP49321 788 aaPredicted RBP11.07□□□□□ -0.64
USP54-214ENST00000492357 ADCY7P51828 1080 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 GTF2A2P52657 109 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 NPY5RQ15761 445 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 TTBK2Q6IQ55 1244 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 HOMER1Q86YM7 354 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 SPICE1Q8N0Z3 855 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 REXO1Q8N1G1 1221 aaKnown RBP11.07□□□□□ -0.64
USP54-214ENST00000492357 JMYQ8N9B5 988 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 TNFRSF25Q93038 417 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 AIFM3Q96NN9 605 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 RPAP3Q9H6T3 665 aaPredicted RBP11.07□□□□□ -0.64
USP54-214ENST00000492357 ELP3Q9H9T3 547 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 RTEL1Q9NZ71 1219 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 VPS54Q9P1Q0 977 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 PNMA3Q9UL41 463 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 AGTPBP1Q9UPW5 1226 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 MTMR7Q9Y216 660 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 RABGAP1Q9Y3P9 1069 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 PCDHA1Q9Y5I3 950 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 RLFQ13129 1914 aa11.07□□□□□ -0.64
USP54-214ENST00000492357 SMCO2A6NFE2 343 aa11.06□□□□□ -0.64
USP54-214ENST00000492357 LAD1O00515 517 aa11.06□□□□□ -0.64
USP54-214ENST00000492357 FLOT1O75955 427 aa11.06□□□□□ -0.64
USP54-214ENST00000492357 CELF2O95319 508 aaKnown RBP11.06□□□□□ -0.64
USP54-214ENST00000492357 HMGCS2P54868 508 aa11.06□□□□□ -0.64
USP54-214ENST00000492357 INHBEP58166 350 aa11.06□□□□□ -0.64
USP54-214ENST00000492357 KIAA1755Q5JYT7 1200 aa11.06□□□□□ -0.64
USP54-214ENST00000492357 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.06□□□□□ -0.64
USP54-214ENST00000492357 MCF2L2Q86YR7 1114 aa11.06□□□□□ -0.64
USP54-214ENST00000492357 KCNG4Q8TDN1 519 aa11.06□□□□□ -0.64
USP54-214ENST00000492357 OPTNQ96CV9 577 aa11.06□□□□□ -0.64
USP54-214ENST00000492357 TANGO6Q9C0B7 1094 aa11.06□□□□□ -0.64
USP54-214ENST00000492357 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.06□□□□□ -0.64
USP54-214ENST00000492357 RCOR1Q9UKL0 485 aa11.06□□□□□ -0.64
USP54-214ENST00000492357 ISY1Q9ULR0 285 aaKnown RBP11.06□□□□□ -0.64
USP54-214ENST00000492357 RBBP6Q7Z6E9 1792 aaKnown RBP11.05□□□□□ -0.64
USP54-214ENST00000492357 CCDC194A0A1B0GVG4 234 aa11.05□□□□□ -0.64
USP54-214ENST00000492357 BTBD18B2RXH4 712 aa11.05□□□□□ -0.64
USP54-214ENST00000492357 VWA5AO00534 786 aa11.05□□□□□ -0.64
USP54-214ENST00000492357 KIF3CO14782 793 aa11.05□□□□□ -0.64
USP54-214ENST00000492357 MBD3O95983 291 aa11.05□□□□□ -0.64
USP54-214ENST00000492357 NCLP19338 710 aaKnown RBP11.05□□□□□ -0.64
USP54-214ENST00000492357 SLC16A2P36021 539 aa11.05□□□□□ -0.64
USP54-214ENST00000492357 CLK2P49760 499 aaKnown RBP11.05□□□□□ -0.64
USP54-214ENST00000492357 PRKG1Q13976 671 aa11.05□□□□□ -0.64
USP54-214ENST00000492357 NONOQ15233 471 aaKnown RBP eCLIP11.05□□□□□ -0.64
USP54-214ENST00000492357 ZYXQ15942 572 aaKnown RBP11.05□□□□□ -0.64
USP54-214ENST00000492357 MOXD1Q6UVY6 613 aa11.05□□□□□ -0.64
USP54-214ENST00000492357 RASGRP2Q7LDG7 609 aa11.05□□□□□ -0.64
USP54-214ENST00000492357 FERMT3Q86UX7 667 aa11.05□□□□□ -0.64
USP54-214ENST00000492357 REM2Q8IYK8 340 aaPredicted RBP11.05□□□□□ -0.64
USP54-214ENST00000492357 GPKOWQ92917 476 aaPredicted RBP eCLIP11.05□□□□□ -0.64
USP54-214ENST00000492357 KIFC2Q96AC6 838 aa11.05□□□□□ -0.64
USP54-214ENST00000492357 OTUD5Q96G74 571 aa11.05□□□□□ -0.64
USP54-214ENST00000492357 WNK4Q96J92 1243 aa11.05□□□□□ -0.64
USP54-214ENST00000492357 NUP88Q99567 741 aaPredicted RBP11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms