RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 REPS2Q8NFH8 660 aa22.42■■□□□ 1.18
CCM2-216ENST00000488727 PAGR1Q9BTK6 254 aa22.42■■□□□ 1.18
CCM2-216ENST00000488727 FAM217BQ9NTX9 383 aaPredicted RBP22.42■■□□□ 1.18
CCM2-216ENST00000488727 CDC27P30260 824 aa22.41■■□□□ 1.18
CCM2-216ENST00000488727 METAP2P50579 478 aaKnown RBP eCLIP22.41■■□□□ 1.18
CCM2-216ENST00000488727 SNAP25P60880 206 aa22.41■■□□□ 1.18
CCM2-216ENST00000488727 ZNF274Q96GC6 653 aaPredicted RBP22.41■■□□□ 1.18
CCM2-216ENST00000488727 CYTH3O43739 400 aa22.4■■□□□ 1.18
CCM2-216ENST00000488727 HSPA1AP0DMV8 641 aaKnown RBP22.4■■□□□ 1.18
CCM2-216ENST00000488727 HSPA1BP0DMV9 641 aaKnown RBP22.4■■□□□ 1.18
CCM2-216ENST00000488727 ZNF445P59923 1031 aa22.4■■□□□ 1.18
CCM2-216ENST00000488727 RTN1Q16799 776 aa22.4■■□□□ 1.18
CCM2-216ENST00000488727 FAM110CQ1W6H9 321 aa22.4■■□□□ 1.18
CCM2-216ENST00000488727 ADGRF4Q8IZF3 695 aa22.4■■□□□ 1.18
CCM2-216ENST00000488727 CMTR1Q8N1G2 835 aaKnown RBP22.4■■□□□ 1.18
CCM2-216ENST00000488727 GTF3C2Q8WUA4 911 aaPredicted RBP22.4■■□□□ 1.18
CCM2-216ENST00000488727 SLC38A10Q9HBR0 1119 aa22.4■■□□□ 1.18
CCM2-216ENST00000488727 MORF4L1Q9UBU8 362 aa22.4■■□□□ 1.18
CCM2-216ENST00000488727 RABGAP1Q9Y3P9 1069 aa22.4■■□□□ 1.18
CCM2-216ENST00000488727 MYH6P13533 1939 aa22.4■■□□□ 1.18
CCM2-216ENST00000488727 LARGE1O95461 756 aa22.4■■□□□ 1.18
CCM2-216ENST00000488727 TMEM132BQ14DG7 1078 aa22.4■■□□□ 1.18
CCM2-216ENST00000488727 Q3C1V9 767 aa22.4■■□□□ 1.18
CCM2-216ENST00000488727 SRBD1Q8N5C6 995 aaKnown RBP22.4■■□□□ 1.18
CCM2-216ENST00000488727 MB21D1Q8N884 522 aa22.4■■□□□ 1.18
CCM2-216ENST00000488727 ZSWIM8A7E2V4 1837 aa22.39■■□□□ 1.17
CCM2-216ENST00000488727 SMCHD1A6NHR9 2005 aa22.39■■□□□ 1.17
CCM2-216ENST00000488727 FOXN1O15353 648 aa22.39■■□□□ 1.17
CCM2-216ENST00000488727 PRPF40AO75400 957 aaKnown RBP22.39■■□□□ 1.17
CCM2-216ENST00000488727 ERVK-9P63128 1117 aa22.39■■□□□ 1.17
CCM2-216ENST00000488727 ERVK-24P63145 666 aa22.39■■□□□ 1.17
CCM2-216ENST00000488727 CCT2P78371 535 aaKnown RBP22.39■■□□□ 1.17
CCM2-216ENST00000488727 STK3Q13188 491 aa22.39■■□□□ 1.17
CCM2-216ENST00000488727 TMTC3Q6ZXV5 915 aa22.39■■□□□ 1.17
CCM2-216ENST00000488727 GAS2L3Q86XJ1 694 aa22.39■■□□□ 1.17
CCM2-216ENST00000488727 RANBP17Q9H2T7 1088 aaKnown RBP22.39■■□□□ 1.17
CCM2-216ENST00000488727 JMJD4Q9H9V9 463 aa22.39■■□□□ 1.17
CCM2-216ENST00000488727 NCOA5Q9HCD5 579 aaKnown RBP22.39■■□□□ 1.17
CCM2-216ENST00000488727 ZNF214Q9UL59 606 aaPredicted RBP22.39■■□□□ 1.17
CCM2-216ENST00000488727 ZNF536O15090 1300 aa22.38■■□□□ 1.17
CCM2-216ENST00000488727 TCHHQ07283 1943 aa22.38■■□□□ 1.17
CCM2-216ENST00000488727 GPR25O00155 361 aa22.38■■□□□ 1.17
CCM2-216ENST00000488727 MBD3O95983 291 aa22.38■■□□□ 1.17
CCM2-216ENST00000488727 ADD1P35611 737 aaKnown RBP22.38■■□□□ 1.17
CCM2-216ENST00000488727 ME3Q16798 604 aa22.38■■□□□ 1.17
CCM2-216ENST00000488727 RIOX1Q9H6W3 641 aa22.38■■□□□ 1.17
CCM2-216ENST00000488727 VAT1LQ9HCJ6 419 aa22.38■■□□□ 1.17
CCM2-216ENST00000488727 RBM28Q9NW13 759 aaKnown RBP22.38■■□□□ 1.17
CCM2-216ENST00000488727 SMC3Q9UQE7 1217 aa22.38■■□□□ 1.17
CCM2-216ENST00000488727 DHX16O60231 1041 aaKnown RBP22.37■■□□□ 1.17
CCM2-216ENST00000488727 GPRC5AQ8NFJ5 357 aa22.37■■□□□ 1.17
CCM2-216ENST00000488727 MGAMO43451 1857 aa22.37■■□□□ 1.17
CCM2-216ENST00000488727 ZBED4O75132 1171 aa22.37■■□□□ 1.17
CCM2-216ENST00000488727 FDX1P10109 184 aa22.37■■□□□ 1.17
CCM2-216ENST00000488727 GNAQP50148 359 aa22.37■■□□□ 1.17
CCM2-216ENST00000488727 FUT2Q10981 343 aa22.37■■□□□ 1.17
CCM2-216ENST00000488727 PPP2R5BQ15173 497 aa22.37■■□□□ 1.17
CCM2-216ENST00000488727 CCDC174Q6PII3 467 aa22.37■■□□□ 1.17
CCM2-216ENST00000488727 CPXCR1Q8N123 301 aa22.37■■□□□ 1.17
CCM2-216ENST00000488727 CCDC82Q8N4S0 544 aa22.37■■□□□ 1.17
CCM2-216ENST00000488727 GPT2Q8TD30 523 aa22.37■■□□□ 1.17
CCM2-216ENST00000488727 SPZ1Q9BXG8 430 aa22.37■■□□□ 1.17
CCM2-216ENST00000488727 RAVER2Q9HCJ3 691 aaKnown RBP22.37■■□□□ 1.17
CCM2-216ENST00000488727 PFKFB2O60825 505 aa22.36■■□□□ 1.17
CCM2-216ENST00000488727 SCRN1Q12765 414 aa22.36■■□□□ 1.17
CCM2-216ENST00000488727 CDC37Q16543 378 aaPredicted RBP22.36■■□□□ 1.17
CCM2-216ENST00000488727 NOM1Q5C9Z4 860 aaKnown RBP22.36■■□□□ 1.17
CCM2-216ENST00000488727 MTMR8Q96EF0 704 aa22.36■■□□□ 1.17
CCM2-216ENST00000488727 LZTS2Q9BRK4 669 aa22.36■■□□□ 1.17
CCM2-216ENST00000488727 SPATC1LQ9H0A9 340 aa22.36■■□□□ 1.17
CCM2-216ENST00000488727 CNTNAP5Q8WYK1 1306 aa22.35■■□□□ 1.17
CCM2-216ENST00000488727 ATP2A1O14983 1001 aa22.35■■□□□ 1.17
CCM2-216ENST00000488727 ZSCAN22P10073 491 aaPredicted RBP22.35■■□□□ 1.17
CCM2-216ENST00000488727 HSPA8P11142 646 aaKnown RBP22.35■■□□□ 1.17
CCM2-216ENST00000488727 PDIA4P13667 645 aaKnown RBP22.35■■□□□ 1.17
CCM2-216ENST00000488727 TAL1P17542 331 aaPredicted RBP22.35■■□□□ 1.17
CCM2-216ENST00000488727 SMARCA1P28370 1054 aa22.35■■□□□ 1.17
CCM2-216ENST00000488727 CAP1Q01518 475 aa22.35■■□□□ 1.17
CCM2-216ENST00000488727 SP3Q02447 781 aa22.35■■□□□ 1.17
CCM2-216ENST00000488727 PLS1Q14651 629 aa22.35■■□□□ 1.17
CCM2-216ENST00000488727 TMEM87AQ8NBN3 555 aa22.35■■□□□ 1.17
CCM2-216ENST00000488727 ZNF296Q8WUU4 475 aaPredicted RBP22.35■■□□□ 1.17
CCM2-216ENST00000488727 AGBL1Q96MI9 1066 aa22.35■■□□□ 1.17
CCM2-216ENST00000488727 PIGSQ96S52 555 aa22.35■■□□□ 1.17
CCM2-216ENST00000488727 MOV10L1Q9BXT6 1211 aaKnown RBP22.35■■□□□ 1.17
CCM2-216ENST00000488727 PORCNQ9H237 461 aa22.35■■□□□ 1.17
CCM2-216ENST00000488727 CCDC196A0A1B0GTZ2 297 aa22.34■■□□□ 1.17
CCM2-216ENST00000488727 STAT3P40763 770 aa22.34■■□□□ 1.17
CCM2-216ENST00000488727 ST3GAL1Q11201 340 aa22.34■■□□□ 1.17
CCM2-216ENST00000488727 NTRK3Q16288 839 aa22.34■■□□□ 1.17
CCM2-216ENST00000488727 QRICH1Q2TAL8 776 aa22.34■■□□□ 1.17
CCM2-216ENST00000488727 FOXD4L5Q5VV16 416 aaPredicted RBP22.34■■□□□ 1.17
CCM2-216ENST00000488727 CCDC83Q8IWF9 413 aa22.34■■□□□ 1.17
CCM2-216ENST00000488727 NECAB1Q8N987 351 aa22.34■■□□□ 1.17
CCM2-216ENST00000488727 FOXD4L4Q8WXT5 416 aaPredicted RBP22.34■■□□□ 1.17
CCM2-216ENST00000488727 RIPK3Q9Y572 518 aa22.34■■□□□ 1.17
CCM2-216ENST00000488727 CTDP1Q9Y5B0 961 aaPredicted RBP22.34■■□□□ 1.17
CCM2-216ENST00000488727 STX6O43752 255 aa22.34■■□□□ 1.17
CCM2-216ENST00000488727 ECM2O94769 699 aaPredicted RBP22.34■■□□□ 1.17
CCM2-216ENST00000488727 CTGFP29279 349 aa22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms