RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 LPAR1Q92633 364 aa6.81□□□□□ -1.32
CUX1-208ENST00000485792 USP6NLQ92738 828 aa6.81□□□□□ -1.32
CUX1-208ENST00000485792 CEP95Q96GE4 821 aa6.81□□□□□ -1.32
CUX1-208ENST00000485792 DSCC1Q9BVC3 393 aa6.81□□□□□ -1.32
CUX1-208ENST00000485792 CABP5Q9NP86 173 aa6.81□□□□□ -1.32
CUX1-208ENST00000485792 TCP11L1Q9NUJ3 509 aa6.81□□□□□ -1.32
CUX1-208ENST00000485792 FLRT1Q9NZU1 646 aa6.81□□□□□ -1.32
CUX1-208ENST00000485792 DDX49Q9Y6V7 483 aaKnown RBP6.81□□□□□ -1.32
CUX1-208ENST00000485792 RAD50Q92878 1312 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 LAMA2P24043 3122 aaKnown RBP6.8□□□□□ -1.32
CUX1-208ENST00000485792 USP17L15C9J2P7 530 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 USP17L13C9JLJ4 530 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 USP17L11C9JVI0 530 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 USP17L18D6R9N7 530 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 USP17L22D6RA61 530 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 USP17L17D6RBQ6 530 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 USP17L19D6RCP7 530 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 USP17L20D6RJB6 530 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 HIP1O00291 1037 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 SGSM2O43147 1006 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 CFHP08603 1231 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 PCP11498 1178 aaKnown RBP6.8□□□□□ -1.32
CUX1-208ENST00000485792 EEF2P13639 858 aaKnown RBP6.8□□□□□ -1.32
CUX1-208ENST00000485792 PTGS1P23219 599 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 SOX10P56693 466 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 HERVK_113P62684 666 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 USP17L24Q0WX57 530 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 PABPC4Q13310 644 aaKnown RBP eCLIP6.8□□□□□ -1.32
CUX1-208ENST00000485792 IRF5Q13568 498 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 RAB3GAP1Q15042 981 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 MTFR1Q15390 333 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 CWC27Q6UX04 472 aaKnown RBP6.8□□□□□ -1.32
CUX1-208ENST00000485792 CYB5R4Q7L1T6 521 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 IL27Q8NEV9 243 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 SH3TC2Q8TF17 1288 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 GTF3C2Q8WUA4 911 aaPredicted RBP6.8□□□□□ -1.32
CUX1-208ENST00000485792 ATG4CQ96DT6 458 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 NACAP1Q9BZK3 213 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 LSG1Q9H089 658 aaKnown RBP6.8□□□□□ -1.32
CUX1-208ENST00000485792 VCPKMTQ9H867 229 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 EFCC1Q9HA90 598 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 MTMR4Q9NYA4 1195 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 SRRDQ9UH36 339 aa6.8□□□□□ -1.32
CUX1-208ENST00000485792 ZNF536O15090 1300 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 SZT2Q5T011 3432 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 MINDY4BA8MYZ0 360 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 ATP2A1O14983 1001 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 PLA2G6O60733 806 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 NDUFB10O96000 172 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 CYP21A2P08686 494 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 ELNP15502 786 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 PSMC4P43686 418 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 GCGRP47871 477 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 ICA1Q05084 483 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 PDE4BQ07343 736 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 ARHGEF6Q15052 776 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 CCL14Q16627 93 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 BMP2KLQ5H9B9 411 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 AMOTL1Q8IY63 956 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 GMCL1P1Q8NEA9 526 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 STAG1Q8WVM7 1258 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 TRIB2Q92519 343 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 ANKS1AQ92625 1134 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 RILPL2Q969X0 211 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 CHMP4CQ96CF2 233 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 ZNF333Q96JL9 665 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 TRIM34Q9BYJ4 488 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 NAPBQ9H115 298 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 CPVLQ9H3G5 476 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 RPAP3Q9H6T3 665 aaPredicted RBP6.79□□□□□ -1.32
CUX1-208ENST00000485792 ZNF287Q9HBT7 754 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 HOXC10Q9NYD6 342 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 TMOD4Q9NZQ9 345 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 ZNF214Q9UL59 606 aaPredicted RBP6.79□□□□□ -1.32
CUX1-208ENST00000485792 RABGAP1Q9Y3P9 1069 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 TRIM17Q9Y577 477 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 DOCK5Q9H7D0 1870 aa6.79□□□□□ -1.32
CUX1-208ENST00000485792 WDR46O15213 610 aaKnown RBP6.78□□□□□ -1.32
CUX1-208ENST00000485792 ADCY6O43306 1168 aa6.78□□□□□ -1.32
CUX1-208ENST00000485792 HOXC6P09630 235 aa6.78□□□□□ -1.32
CUX1-208ENST00000485792 SNHG28P0DPA3 235 aa6.78□□□□□ -1.32
CUX1-208ENST00000485792 XRCC5P13010 732 aaKnown RBP6.78□□□□□ -1.32
CUX1-208ENST00000485792 TDO2P48775 406 aa6.78□□□□□ -1.32
CUX1-208ENST00000485792 MFAP1P55081 439 aaKnown RBP6.78□□□□□ -1.32
CUX1-208ENST00000485792 ERVK-9P63128 1117 aa6.78□□□□□ -1.32
CUX1-208ENST00000485792 ERVK-24P63145 666 aa6.78□□□□□ -1.32
CUX1-208ENST00000485792 COG2Q14746 738 aa6.78□□□□□ -1.32
CUX1-208ENST00000485792 TMEM132BQ14DG7 1078 aa6.78□□□□□ -1.32
CUX1-208ENST00000485792 TMEM132AQ24JP5 1023 aa6.78□□□□□ -1.32
CUX1-208ENST00000485792 MORN1Q5T089 497 aa6.78□□□□□ -1.32
CUX1-208ENST00000485792 FAM83BQ5T0W9 1011 aa6.78□□□□□ -1.32
CUX1-208ENST00000485792 AKNAD1Q5T1N1 836 aa6.78□□□□□ -1.32
CUX1-208ENST00000485792 UBE2Q1Q7Z7E8 422 aa6.78□□□□□ -1.32
CUX1-208ENST00000485792 MB21D1Q8N884 522 aa6.78□□□□□ -1.32
CUX1-208ENST00000485792 SHCBP1Q8NEM2 672 aa6.78□□□□□ -1.32
CUX1-208ENST00000485792 TRPV1Q8NER1 839 aa6.78□□□□□ -1.32
CUX1-208ENST00000485792 MAP4K1Q92918 833 aa6.78□□□□□ -1.32
CUX1-208ENST00000485792 GMCL1Q96IK5 515 aa6.78□□□□□ -1.32
CUX1-208ENST00000485792 TTC14Q96N46 770 aa6.78□□□□□ -1.32
CUX1-208ENST00000485792 SH2D4AQ9H788 454 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms