RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 KIR2DL2P43627 348 aaPredicted RBP9.29□□□□□ -0.92
USP40-213ENST00000483216 SOGA3Q5TF21 947 aa9.29□□□□□ -0.92
USP40-213ENST00000483216 AP5S1Q9NUS5 200 aa9.29□□□□□ -0.92
USP40-213ENST00000483216 TNFRSF10DQ9UBN6 386 aa9.29□□□□□ -0.92
USP40-213ENST00000483216 NOP56O00567 594 aaKnown RBP9.28□□□□□ -0.92
USP40-213ENST00000483216 U2SURPO15042 1029 aaKnown RBP9.28□□□□□ -0.92
USP40-213ENST00000483216 CD3EP07766 207 aa9.28□□□□□ -0.92
USP40-213ENST00000483216 ERVFC1P60507 584 aa9.28□□□□□ -0.92
USP40-213ENST00000483216 AMPD2Q01433 879 aa9.28□□□□□ -0.92
USP40-213ENST00000483216 LILRA2Q8N149 483 aa9.28□□□□□ -0.92
USP40-213ENST00000483216 MRGPRX3Q96LB0 322 aa9.28□□□□□ -0.92
USP40-213ENST00000483216 DRC1Q96MC2 740 aa9.28□□□□□ -0.92
USP40-213ENST00000483216 ERVK13-1Q9NX77 482 aa9.28□□□□□ -0.92
USP40-213ENST00000483216 SIRPGQ9P1W8 387 aa9.28□□□□□ -0.92
USP40-213ENST00000483216 MSRB2Q9Y3D2 182 aa9.28□□□□□ -0.92
USP40-213ENST00000483216 VAMP4O75379 141 aa9.27□□□□□ -0.93
USP40-213ENST00000483216 SV2CQ496J9 727 aa9.27□□□□□ -0.93
USP40-213ENST00000483216 TRIM59Q8IWR1 403 aa9.27□□□□□ -0.93
USP40-213ENST00000483216 MYLIPQ8WY64 445 aa9.27□□□□□ -0.93
USP40-213ENST00000483216 KIRREL1Q96J84 757 aa9.27□□□□□ -0.93
USP40-213ENST00000483216 HHIPL1Q96JK4 782 aa9.27□□□□□ -0.93
USP40-213ENST00000483216 MCMBPQ9BTE3 642 aa9.27□□□□□ -0.93
USP40-213ENST00000483216 AURKAO14965 403 aa9.26□□□□□ -0.93
USP40-213ENST00000483216 FGF10O15520 208 aaPredicted RBP9.26□□□□□ -0.93
USP40-213ENST00000483216 IFNGR1P15260 489 aa9.26□□□□□ -0.93
USP40-213ENST00000483216 SERINC3Q13530 473 aa9.26□□□□□ -0.93
USP40-213ENST00000483216 SLC10A6Q3KNW5 377 aa9.26□□□□□ -0.93
USP40-213ENST00000483216 FYB2Q5VWT5 728 aa9.26□□□□□ -0.93
USP40-213ENST00000483216 RCSD1Q6JBY9 416 aa9.26□□□□□ -0.93
USP40-213ENST00000483216 ZSWIM9Q86XI8 627 aa9.26□□□□□ -0.93
USP40-213ENST00000483216 ST13P5Q8NFI4 369 aaPredicted RBP9.26□□□□□ -0.93
USP40-213ENST00000483216 ABHD4Q8TB40 342 aa9.26□□□□□ -0.93
USP40-213ENST00000483216 ASIC4Q96FT7 647 aa9.26□□□□□ -0.93
USP40-213ENST00000483216 FADS2P1A8MWK0 482 aa9.25□□□□□ -0.93
USP40-213ENST00000483216 KCNH1O95259 989 aa9.25□□□□□ -0.93
USP40-213ENST00000483216 CYP2R1Q6VVX0 501 aa9.25□□□□□ -0.93
USP40-213ENST00000483216 TMEM52Q8NDY8 209 aa9.25□□□□□ -0.93
USP40-213ENST00000483216 PPP1R14AQ96A00 147 aa9.25□□□□□ -0.93
USP40-213ENST00000483216 CCDC113Q9H0I3 377 aa9.25□□□□□ -0.93
USP40-213ENST00000483216 CARMIL2Q6F5E8 1435 aa9.24□□□□□ -0.93
USP40-213ENST00000483216 USP2O75604 605 aaPredicted RBP9.24□□□□□ -0.93
USP40-213ENST00000483216 ITGAVP06756 1048 aa9.24□□□□□ -0.93
USP40-213ENST00000483216 CEBPAP49715 358 aaPredicted RBP9.24□□□□□ -0.93
USP40-213ENST00000483216 SNX17Q15036 470 aa9.24□□□□□ -0.93
USP40-213ENST00000483216 KCNMB1Q16558 191 aa9.24□□□□□ -0.93
USP40-213ENST00000483216 DPY19L1Q2PZI1 675 aa9.24□□□□□ -0.93
USP40-213ENST00000483216 EEF1DP3Q658K8 133 aa9.24□□□□□ -0.93
USP40-213ENST00000483216 ZNF227Q86WZ6 799 aa9.24□□□□□ -0.93
USP40-213ENST00000483216 FAM168AQ92567 244 aa9.24□□□□□ -0.93
USP40-213ENST00000483216 LRP2BPQ9P2M1 347 aa9.24□□□□□ -0.93
USP40-213ENST00000483216 GPR55Q9Y2T6 319 aaPredicted RBP9.24□□□□□ -0.93
USP40-213ENST00000483216 BACE2Q9Y5Z0 518 aa9.24□□□□□ -0.93
USP40-213ENST00000483216 NOTOA8MTQ0 251 aa9.23□□□□□ -0.93
USP40-213ENST00000483216 AGRPO00253 132 aa9.23□□□□□ -0.93
USP40-213ENST00000483216 NRDCO43847 1150 aa9.23□□□□□ -0.93
USP40-213ENST00000483216 GLI1P08151 1106 aa9.23□□□□□ -0.93
USP40-213ENST00000483216 TRHRP34981 398 aaPredicted RBP9.23□□□□□ -0.93
USP40-213ENST00000483216 RTP1P59025 263 aa9.23□□□□□ -0.93
USP40-213ENST00000483216 SLC14A2Q15849 920 aa9.23□□□□□ -0.93
USP40-213ENST00000483216 TIGD5Q53EQ6 642 aa9.23□□□□□ -0.93
USP40-213ENST00000483216 TMEM67Q5HYA8 995 aa9.23□□□□□ -0.93
USP40-213ENST00000483216 GTF2IRD2BQ6EKJ0 949 aa9.23□□□□□ -0.93
USP40-213ENST00000483216 CEP128Q6ZU80 1094 aa9.23□□□□□ -0.93
USP40-213ENST00000483216 GTF2IRD2Q86UP8 949 aa9.23□□□□□ -0.93
USP40-213ENST00000483216 NAT16Q8N8M0 369 aa9.23□□□□□ -0.93
USP40-213ENST00000483216 ZNF669Q96BR6 464 aaPredicted RBP9.23□□□□□ -0.93
USP40-213ENST00000483216 PTCHD1Q96NR3 888 aa9.23□□□□□ -0.93
USP40-213ENST00000483216 C19orf44Q9H6X5 657 aa9.23□□□□□ -0.93
USP40-213ENST00000483216 A0A1W2PQ45 241 aaPredicted RBP9.22□□□□□ -0.93
USP40-213ENST00000483216 A0A1W2PQY0 241 aa9.22□□□□□ -0.93
USP40-213ENST00000483216 C2orf71A6NGG8 1288 aa9.22□□□□□ -0.93
USP40-213ENST00000483216 STXBP3O00186 592 aa9.22□□□□□ -0.93
USP40-213ENST00000483216 HLA-DQA1Q5Y7H0 255 aa9.22□□□□□ -0.93
USP40-213ENST00000483216 LRP10Q7Z4F1 713 aa9.22□□□□□ -0.93
USP40-213ENST00000483216 SLCO6A1Q86UG4 719 aa9.22□□□□□ -0.93
USP40-213ENST00000483216 UBXN4Q92575 508 aa9.22□□□□□ -0.93
USP40-213ENST00000483216 COPS5Q92905 334 aa9.22□□□□□ -0.93
USP40-213ENST00000483216 SGSM3Q96HU1 749 aa9.22□□□□□ -0.93
USP40-213ENST00000483216 LGR4Q9BXB1 951 aa9.22□□□□□ -0.93
USP40-213ENST00000483216 CWC22Q9HCG8 908 aaKnown RBP9.22□□□□□ -0.93
USP40-213ENST00000483216 CYP26B1Q9NR63 512 aa9.22□□□□□ -0.93
USP40-213ENST00000483216 WTIPA6NIX2 430 aaPredicted RBP9.21□□□□□ -0.94
USP40-213ENST00000483216 PDPK1O15530 556 aa9.21□□□□□ -0.94
USP40-213ENST00000483216 TBC1D8O95759 1140 aa9.21□□□□□ -0.94
USP40-213ENST00000483216 CAPNS1P04632 268 aa9.21□□□□□ -0.94
USP40-213ENST00000483216 SEPHS1P49903 392 aa9.21□□□□□ -0.94
USP40-213ENST00000483216 RASGRF1Q13972 1273 aa9.21□□□□□ -0.94
USP40-213ENST00000483216 MKL1Q969V6 931 aa9.21□□□□□ -0.94
USP40-213ENST00000483216 NKX2-4Q9H2Z4 354 aa9.21□□□□□ -0.94
USP40-213ENST00000483216 IQCA1LA6NCM1 817 aa9.2□□□□□ -0.94
USP40-213ENST00000483216 PSPNO60542 156 aa9.2□□□□□ -0.94
USP40-213ENST00000483216 HSF5Q4G112 596 aaPredicted RBP9.2□□□□□ -0.94
USP40-213ENST00000483216 GALNT18Q6P9A2 607 aa9.2□□□□□ -0.94
USP40-213ENST00000483216 NLRX1Q86UT6 975 aa9.2□□□□□ -0.94
USP40-213ENST00000483216 BTN2A2Q8WVV5 523 aa9.2□□□□□ -0.94
USP40-213ENST00000483216 SHISA4Q96DD7 197 aa9.2□□□□□ -0.94
USP40-213ENST00000483216 DNAJC2Q99543 621 aaKnown RBP9.2□□□□□ -0.94
USP40-213ENST00000483216 RNF32Q9H0A6 362 aa9.2□□□□□ -0.94
USP40-213ENST00000483216 GPR160Q9UJ42 338 aa9.2□□□□□ -0.94
USP40-213ENST00000483216 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms