RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 KIAA1755Q5JYT7 1200 aa11.69□□□□□ -0.54
USP39-215ENST00000481409 LBX2Q6XYB7 198 aa11.69□□□□□ -0.54
USP39-215ENST00000481409 OTUD5Q96G74 571 aa11.69□□□□□ -0.54
USP39-215ENST00000481409 PIGSQ96S52 555 aa11.69□□□□□ -0.54
USP39-215ENST00000481409 RPAP3Q9H6T3 665 aaPredicted RBP11.69□□□□□ -0.54
USP39-215ENST00000481409 VAT1LQ9HCJ6 419 aa11.69□□□□□ -0.54
USP39-215ENST00000481409 MAP3K20Q9NYL2 800 aaKnown RBP11.69□□□□□ -0.54
USP39-215ENST00000481409 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.69□□□□□ -0.54
USP39-215ENST00000481409 CFAP45Q9UL16 551 aa11.69□□□□□ -0.54
USP39-215ENST00000481409 ADAMTS5Q9UNA0 930 aa11.69□□□□□ -0.54
USP39-215ENST00000481409 FZD1Q9UP38 647 aa11.69□□□□□ -0.54
USP39-215ENST00000481409 AGTPBP1Q9UPW5 1226 aa11.69□□□□□ -0.54
USP39-215ENST00000481409 ATP2A1O14983 1001 aa11.68□□□□□ -0.54
USP39-215ENST00000481409 ZBED4O75132 1171 aa11.68□□□□□ -0.54
USP39-215ENST00000481409 FLOT1O75955 427 aa11.68□□□□□ -0.54
USP39-215ENST00000481409 SLC16A2P36021 539 aa11.68□□□□□ -0.54
USP39-215ENST00000481409 MRPL12P52815 198 aaKnown RBP11.68□□□□□ -0.54
USP39-215ENST00000481409 NAPAP54920 295 aa11.68□□□□□ -0.54
USP39-215ENST00000481409 KIF23Q02241 960 aaPredicted RBP11.68□□□□□ -0.54
USP39-215ENST00000481409 RESTQ13127 1097 aa11.68□□□□□ -0.54
USP39-215ENST00000481409 PKP1Q13835 747 aa11.68□□□□□ -0.54
USP39-215ENST00000481409 QRICH1Q2TAL8 776 aa11.68□□□□□ -0.54
USP39-215ENST00000481409 CST9Q5W186 159 aa11.68□□□□□ -0.54
USP39-215ENST00000481409 WWC2Q6AWC2 1192 aa11.68□□□□□ -0.54
USP39-215ENST00000481409 DLK2Q6UY11 383 aa11.68□□□□□ -0.54
USP39-215ENST00000481409 HEATR3Q7Z4Q2 680 aa11.68□□□□□ -0.54
USP39-215ENST00000481409 CCDC84Q86UT8 332 aaPredicted RBP11.68□□□□□ -0.54
USP39-215ENST00000481409 FBXO11Q86XK2 927 aa11.68□□□□□ -0.54
USP39-215ENST00000481409 HOMER1Q86YM7 354 aa11.68□□□□□ -0.54
USP39-215ENST00000481409 TNPO1Q92973 898 aaKnown RBP11.68□□□□□ -0.54
USP39-215ENST00000481409 WNK4Q96J92 1243 aa11.68□□□□□ -0.54
USP39-215ENST00000481409 CLMNQ96JQ2 1002 aa11.68□□□□□ -0.54
USP39-215ENST00000481409 ZNF396Q96N95 335 aaPredicted RBP11.68□□□□□ -0.54
USP39-215ENST00000481409 NUP88Q99567 741 aaPredicted RBP11.68□□□□□ -0.54
USP39-215ENST00000481409 TANGO6Q9C0B7 1094 aa11.68□□□□□ -0.54
USP39-215ENST00000481409 SLC38A10Q9HBR0 1119 aa11.68□□□□□ -0.54
USP39-215ENST00000481409 ZCCHC17Q9NP64 241 aaKnown RBP11.68□□□□□ -0.54
USP39-215ENST00000481409 VPS54Q9P1Q0 977 aa11.68□□□□□ -0.54
USP39-215ENST00000481409 PNMA3Q9UL41 463 aa11.68□□□□□ -0.54
USP39-215ENST00000481409 PCDHA4Q9UN74 947 aa11.68□□□□□ -0.54
USP39-215ENST00000481409 CTDP1Q9Y5B0 961 aaPredicted RBP11.68□□□□□ -0.54
USP39-215ENST00000481409 PARP14Q460N5 1801 aa11.67□□□□□ -0.54
USP39-215ENST00000481409 ABCB11O95342 1321 aa11.67□□□□□ -0.54
USP39-215ENST00000481409 ICAM1P05362 532 aa11.67□□□□□ -0.54
USP39-215ENST00000481409 OSBPP22059 807 aa11.67□□□□□ -0.54
USP39-215ENST00000481409 COPB2P35606 906 aa11.67□□□□□ -0.54
USP39-215ENST00000481409 TRAPPC10P48553 1259 aa11.67□□□□□ -0.54
USP39-215ENST00000481409 INHBEP58166 350 aa11.67□□□□□ -0.54
USP39-215ENST00000481409 KRT85P78386 507 aa11.67□□□□□ -0.54
USP39-215ENST00000481409 TKFCQ3LXA3 575 aa11.67□□□□□ -0.54
USP39-215ENST00000481409 RILPL1Q5EBL4 403 aa11.67□□□□□ -0.54
USP39-215ENST00000481409 MCTP1Q6DN14 999 aa11.67□□□□□ -0.54
USP39-215ENST00000481409 MOB2Q70IA6 237 aa11.67□□□□□ -0.54
USP39-215ENST00000481409 RASGRP2Q7LDG7 609 aa11.67□□□□□ -0.54
USP39-215ENST00000481409 NOSTRINQ8IVI9 506 aa11.67□□□□□ -0.54
USP39-215ENST00000481409 DIS3L2Q8IYB7 885 aaKnown RBP11.67□□□□□ -0.54
USP39-215ENST00000481409 BLIDQ8IZY5 108 aa11.67□□□□□ -0.54
USP39-215ENST00000481409 CUL5Q93034 780 aa11.67□□□□□ -0.54
USP39-215ENST00000481409 CCDC102AQ96A19 550 aa11.67□□□□□ -0.54
USP39-215ENST00000481409 KIFC2Q96AC6 838 aa11.67□□□□□ -0.54
USP39-215ENST00000481409 AIFM3Q96NN9 605 aa11.67□□□□□ -0.54
USP39-215ENST00000481409 RIC8AQ9NPQ8 531 aa11.67□□□□□ -0.54
USP39-215ENST00000481409 MRPL11Q9Y3B7 192 aaKnown RBP11.67□□□□□ -0.54
USP39-215ENST00000481409 PCDHA1Q9Y5I3 950 aa11.67□□□□□ -0.54
USP39-215ENST00000481409 TLL2Q9Y6L7 1015 aa11.67□□□□□ -0.54
USP39-215ENST00000481409 SMCO2A6NFE2 343 aa11.66□□□□□ -0.54
USP39-215ENST00000481409 PIK3CDO00329 1044 aa11.66□□□□□ -0.54
USP39-215ENST00000481409 BMP15O95972 392 aa11.66□□□□□ -0.54
USP39-215ENST00000481409 YY1P25490 414 aa11.66□□□□□ -0.54
USP39-215ENST00000481409 ADCY7P51828 1080 aa11.66□□□□□ -0.54
USP39-215ENST00000481409 HUNKP57058 714 aa11.66□□□□□ -0.54
USP39-215ENST00000481409 ORC2Q13416 577 aaPredicted RBP11.66□□□□□ -0.54
USP39-215ENST00000481409 SPRYD7Q5W111 196 aa11.66□□□□□ -0.54
USP39-215ENST00000481409 RGMBQ6NW40 437 aa11.66□□□□□ -0.54
USP39-215ENST00000481409 SAPCD2Q86UD0 394 aa11.66□□□□□ -0.54
USP39-215ENST00000481409 MCF2L2Q86YR7 1114 aa11.66□□□□□ -0.54
USP39-215ENST00000481409 REM2Q8IYK8 340 aaPredicted RBP11.66□□□□□ -0.54
USP39-215ENST00000481409 SCAND2PQ9GZW5 306 aaPredicted RBP11.66□□□□□ -0.54
USP39-215ENST00000481409 NOL7Q9UMY1 257 aaKnown RBP11.66□□□□□ -0.54
USP39-215ENST00000481409 MORC2Q9Y6X9 1032 aaPredicted RBP11.66□□□□□ -0.54
USP39-215ENST00000481409 BAZ2BQ9UIF8 2168 aaKnown RBP11.66□□□□□ -0.54
USP39-215ENST00000481409 RLFQ13129 1914 aa11.65□□□□□ -0.54
USP39-215ENST00000481409 MYH15Q9Y2K3 1946 aa11.65□□□□□ -0.54
USP39-215ENST00000481409 TESPA1A2RU30 521 aaPredicted RBP11.65□□□□□ -0.54
USP39-215ENST00000481409 MANSC4A6NHS7 340 aaPredicted RBP11.65□□□□□ -0.54
USP39-215ENST00000481409 TMEM88BA6NKF7 163 aa11.65□□□□□ -0.54
USP39-215ENST00000481409 DDX11L8A8MPP1 907 aa11.65□□□□□ -0.54
USP39-215ENST00000481409 M0R2N6 131 aa11.65□□□□□ -0.54
USP39-215ENST00000481409 VWA5AO00534 786 aa11.65□□□□□ -0.54
USP39-215ENST00000481409 PPFIA3O75145 1194 aa11.65□□□□□ -0.54
USP39-215ENST00000481409 FOSP01100 380 aaPredicted RBP11.65□□□□□ -0.54
USP39-215ENST00000481409 IRX3P78415 501 aaPredicted RBP11.65□□□□□ -0.54
USP39-215ENST00000481409 GHRHRQ02643 423 aa11.65□□□□□ -0.54
USP39-215ENST00000481409 AP3B2Q13367 1082 aa11.65□□□□□ -0.54
USP39-215ENST00000481409 GADL1Q6ZQY3 521 aa11.65□□□□□ -0.54
USP39-215ENST00000481409 KRT25Q7Z3Z0 450 aa11.65□□□□□ -0.54
USP39-215ENST00000481409 ANKRD23Q86SG2 305 aa11.65□□□□□ -0.54
USP39-215ENST00000481409 REXO1Q8N1G1 1221 aaKnown RBP11.65□□□□□ -0.54
USP39-215ENST00000481409 GPKOWQ92917 476 aaPredicted RBP eCLIP11.65□□□□□ -0.54
USP39-215ENST00000481409 NAP1L4Q99733 375 aaKnown RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms