RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 NEDD9Q14511 834 aa20.93■□□□□ 0.94
CCDC88B-207ENST00000479965 UBE3CQ15386 1083 aa20.93■□□□□ 0.94
CCDC88B-207ENST00000479965 CCDC40Q4G0X9 1142 aa20.93■□□□□ 0.94
CCDC88B-207ENST00000479965 ALS2CLQ60I27 953 aa20.93■□□□□ 0.94
CCDC88B-207ENST00000479965 DHX37Q8IY37 1157 aaKnown RBP20.93■□□□□ 0.94
CCDC88B-207ENST00000479965 USO1O60763 962 aaKnown RBP20.92■□□□□ 0.94
CCDC88B-207ENST00000479965 TRIM58Q8NG06 486 aa20.92■□□□□ 0.94
CCDC88B-207ENST00000479965 HELBQ8NG08 1087 aaPredicted RBP20.92■□□□□ 0.94
CCDC88B-207ENST00000479965 IFIH1Q9BYX4 1025 aaKnown RBP20.92■□□□□ 0.94
CCDC88B-207ENST00000479965 MINDY4BA8MYZ0 360 aa20.92■□□□□ 0.94
CCDC88B-207ENST00000479965 CEP85LQ5SZL2 805 aa20.92■□□□□ 0.94
CCDC88B-207ENST00000479965 EMBQ6PCB8 327 aa20.92■□□□□ 0.94
CCDC88B-207ENST00000479965 FNBP4Q8N3X1 1017 aaPredicted RBP20.92■□□□□ 0.94
CCDC88B-207ENST00000479965 OSBPL9Q96SU4 736 aa20.92■□□□□ 0.94
CCDC88B-207ENST00000479965 RMND1Q9NWS8 449 aa20.92■□□□□ 0.94
CCDC88B-207ENST00000479965 CCDC13Q8IYE1 715 aa20.91■□□□□ 0.94
CCDC88B-207ENST00000479965 CCDC114Q96M63 670 aa20.91■□□□□ 0.94
CCDC88B-207ENST00000479965 SCLT1Q96NL6 688 aa20.91■□□□□ 0.94
CCDC88B-207ENST00000479965 TUBGCP2Q9BSJ2 902 aa20.91■□□□□ 0.94
CCDC88B-207ENST00000479965 EPN3Q9H201 632 aa20.91■□□□□ 0.94
CCDC88B-207ENST00000479965 SLC4A4Q9Y6R1 1079 aa20.91■□□□□ 0.94
CCDC88B-207ENST00000479965 FRMD3A2A2Y4 597 aa20.91■□□□□ 0.94
CCDC88B-207ENST00000479965 CYP27B1O15528 508 aa20.91■□□□□ 0.94
CCDC88B-207ENST00000479965 FAM153BP0C7A2 387 aa20.91■□□□□ 0.94
CCDC88B-207ENST00000479965 NR1D1P20393 614 aa20.91■□□□□ 0.94
CCDC88B-207ENST00000479965 STAT6P42226 847 aa20.91■□□□□ 0.94
CCDC88B-207ENST00000479965 CARSP49589 748 aaKnown RBP20.91■□□□□ 0.94
CCDC88B-207ENST00000479965 RNASE9P60153 205 aaKnown RBP20.91■□□□□ 0.94
CCDC88B-207ENST00000479965 FAM153CQ494X1 144 aa20.91■□□□□ 0.94
CCDC88B-207ENST00000479965 HAUS3Q68CZ6 603 aa20.91■□□□□ 0.94
CCDC88B-207ENST00000479965 PIK3AP1Q6ZUJ8 805 aa20.91■□□□□ 0.94
CCDC88B-207ENST00000479965 MAATS1Q7Z4T9 603 aa20.91■□□□□ 0.94
CCDC88B-207ENST00000479965 MS4A14Q96JA4 679 aa20.91■□□□□ 0.94
CCDC88B-207ENST00000479965 CCT8L2Q96SF2 557 aa20.91■□□□□ 0.94
CCDC88B-207ENST00000479965 FAM153AQ9UHL3 310 aa20.91■□□□□ 0.94
CCDC88B-207ENST00000479965 ODF2LQ9ULJ1 636 aa20.91■□□□□ 0.94
CCDC88B-207ENST00000479965 DCAF5Q96JK2 942 aa20.91■□□□□ 0.94
CCDC88B-207ENST00000479965 RBM12Q9NTZ6 932 aaKnown RBP20.91■□□□□ 0.94
CCDC88B-207ENST00000479965 EPB41L3Q9Y2J2 1087 aaPredicted RBP20.91■□□□□ 0.94
CCDC88B-207ENST00000479965 MTIF2P46199 727 aaKnown RBP20.9■□□□□ 0.94
CCDC88B-207ENST00000479965 PDXDC2PQ6P474 469 aa20.9■□□□□ 0.94
CCDC88B-207ENST00000479965 MIGA1Q8NAN2 632 aa20.9■□□□□ 0.94
CCDC88B-207ENST00000479965 EPB41L5Q9HCM4 733 aa20.9■□□□□ 0.94
CCDC88B-207ENST00000479965 EXOC1Q9NV70 894 aa20.9■□□□□ 0.94
CCDC88B-207ENST00000479965 ZNF263O14978 683 aa20.9■□□□□ 0.94
CCDC88B-207ENST00000479965 PPP1R37O75864 691 aa20.9■□□□□ 0.94
CCDC88B-207ENST00000479965 ELF1P32519 619 aa20.9■□□□□ 0.94
CCDC88B-207ENST00000479965 DNM2P50570 870 aa20.9■□□□□ 0.94
CCDC88B-207ENST00000479965 GUCY2DQ02846 1103 aa20.9■□□□□ 0.94
CCDC88B-207ENST00000479965 CSGALNACT2Q8N6G5 542 aa20.9■□□□□ 0.94
CCDC88B-207ENST00000479965 KIF1CO43896 1103 aaKnown RBP20.89■□□□□ 0.94
CCDC88B-207ENST00000479965 PLEKHA8P1O95397 391 aa20.89■□□□□ 0.94
CCDC88B-207ENST00000479965 NLRP14Q86W24 1093 aa20.89■□□□□ 0.94
CCDC88B-207ENST00000479965 C2CD5Q86YS7 1000 aa20.89■□□□□ 0.94
CCDC88B-207ENST00000479965 A0A1W2PQC6 194 aa20.89■□□□□ 0.93
CCDC88B-207ENST00000479965 EPB41P11171 864 aaKnown RBP20.89■□□□□ 0.93
CCDC88B-207ENST00000479965 ERCC3P19447 782 aa20.89■□□□□ 0.93
CCDC88B-207ENST00000479965 E2F5Q15329 346 aa20.89■□□□□ 0.93
CCDC88B-207ENST00000479965 ZNF507Q8TCN5 953 aa20.89■□□□□ 0.93
CCDC88B-207ENST00000479965 ZNF233A6NK53 670 aa20.89■□□□□ 0.93
CCDC88B-207ENST00000479965 A6NNZ2 444 aa20.89■□□□□ 0.93
CCDC88B-207ENST00000479965 BUB1O43683 1085 aa20.89■□□□□ 0.93
CCDC88B-207ENST00000479965 AKR1B10O60218 316 aa20.89■□□□□ 0.93
CCDC88B-207ENST00000479965 DDR1Q08345 913 aa20.89■□□□□ 0.93
CCDC88B-207ENST00000479965 MEA1Q16626 185 aa20.89■□□□□ 0.93
CCDC88B-207ENST00000479965 TUBB8Q3ZCM7 444 aa20.89■□□□□ 0.93
CCDC88B-207ENST00000479965 CCDC170Q8IYT3 715 aa20.89■□□□□ 0.93
CCDC88B-207ENST00000479965 GOLGA6L7A0A1B0GV03 622 aa20.88■□□□□ 0.93
CCDC88B-207ENST00000479965 BACH1O14867 736 aa20.88■□□□□ 0.93
CCDC88B-207ENST00000479965 BMP15O95972 392 aa20.88■□□□□ 0.93
CCDC88B-207ENST00000479965 PTGISQ16647 500 aa20.88■□□□□ 0.93
CCDC88B-207ENST00000479965 RPAINQ86UA6 219 aa20.88■□□□□ 0.93
CCDC88B-207ENST00000479965 SPATS2Q86XZ4 545 aaKnown RBP20.88■□□□□ 0.93
CCDC88B-207ENST00000479965 MYCBPAPQ8TBZ2 947 aa20.88■□□□□ 0.93
CCDC88B-207ENST00000479965 ALS2CR12Q96Q35 445 aa20.88■□□□□ 0.93
CCDC88B-207ENST00000479965 SLC40A1Q9NP59 571 aa20.88■□□□□ 0.93
CCDC88B-207ENST00000479965 HYOU1Q9Y4L1 999 aa20.88■□□□□ 0.93
CCDC88B-207ENST00000479965 SNAP23O00161 211 aa20.88■□□□□ 0.93
CCDC88B-207ENST00000479965 PSMA7O14818 248 aa20.88■□□□□ 0.93
CCDC88B-207ENST00000479965 GLI1P08151 1106 aa20.88■□□□□ 0.93
CCDC88B-207ENST00000479965 ZBED6P86452 979 aa20.88■□□□□ 0.93
CCDC88B-207ENST00000479965 CCDC121Q6ZUS5 278 aa20.88■□□□□ 0.93
CCDC88B-207ENST00000479965 PHF20Q9BVI0 1012 aa20.88■□□□□ 0.93
CCDC88B-207ENST00000479965 RNF26Q9BY78 433 aaPredicted RBP20.88■□□□□ 0.93
CCDC88B-207ENST00000479965 TSGA10Q9BZW7 698 aa20.88■□□□□ 0.93
CCDC88B-207ENST00000479965 PDS5AQ29RF7 1337 aaKnown RBP20.87■□□□□ 0.93
CCDC88B-207ENST00000479965 GSG1L2A8MUP6 293 aa20.87■□□□□ 0.93
CCDC88B-207ENST00000479965 PDHBP11177 359 aa20.87■□□□□ 0.93
CCDC88B-207ENST00000479965 EEF1GP26641 437 aaKnown RBP20.87■□□□□ 0.93
CCDC88B-207ENST00000479965 PKN1Q16512 942 aa20.87■□□□□ 0.93
CCDC88B-207ENST00000479965 ADSSL1Q8N142 457 aa20.87■□□□□ 0.93
CCDC88B-207ENST00000479965 VCPKMTQ9H867 229 aa20.87■□□□□ 0.93
CCDC88B-207ENST00000479965 VEZTQ9HBM0 779 aa20.87■□□□□ 0.93
CCDC88B-207ENST00000479965 PCDHA13Q9Y5I0 950 aa20.87■□□□□ 0.93
CCDC88B-207ENST00000479965 TNKSO95271 1327 aa20.87■□□□□ 0.93
CCDC88B-207ENST00000479965 SMIM22K7EJ46 135 aa20.87■□□□□ 0.93
CCDC88B-207ENST00000479965 HEXIM1O94992 359 aaKnown RBP20.87■□□□□ 0.93
CCDC88B-207ENST00000479965 ITGA6P23229 1130 aa20.87■□□□□ 0.93
CCDC88B-207ENST00000479965 ATP2C1P98194 919 aaPredicted RBP20.87■□□□□ 0.93
CCDC88B-207ENST00000479965 IQCA1Q86XH1 822 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms