RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 SPC25Q9HBM1 224 aa22.15■■□□□ 1.14
SHH-205ENST00000472308 MCM3APO60318 1980 aa22.15■■□□□ 1.14
SHH-205ENST00000472308 TCF20Q9UGU0 1960 aaKnown RBP22.14■■□□□ 1.14
SHH-205ENST00000472308 ASTN1O14525 1302 aa22.14■■□□□ 1.14
SHH-205ENST00000472308 ZBED9Q6R2W3 1325 aa22.14■■□□□ 1.14
SHH-205ENST00000472308 ATP2A1O14983 1001 aa22.14■■□□□ 1.13
SHH-205ENST00000472308 FGBP02675 491 aa22.14■■□□□ 1.13
SHH-205ENST00000472308 RHPN1Q8TCX5 695 aa22.14■■□□□ 1.13
SHH-205ENST00000472308 VWCEQ96DN2 955 aa22.14■■□□□ 1.13
SHH-205ENST00000472308 C1QTNF1Q9BXJ1 281 aa22.14■■□□□ 1.13
SHH-205ENST00000472308 HIPK3Q9H422 1215 aa22.14■■□□□ 1.13
SHH-205ENST00000472308 MYOGP15173 224 aa22.13■■□□□ 1.13
SHH-205ENST00000472308 KCNQ1P51787 676 aa22.13■■□□□ 1.13
SHH-205ENST00000472308 BEX3Q00994 111 aa22.13■■□□□ 1.13
SHH-205ENST00000472308 ARMCX2Q7L311 632 aa22.13■■□□□ 1.13
SHH-205ENST00000472308 MTIF3Q9H2K0 278 aaKnown RBP22.13■■□□□ 1.13
SHH-205ENST00000472308 GRIN2DO15399 1336 aa22.12■■□□□ 1.13
SHH-205ENST00000472308 NDUFB10O96000 172 aa22.12■■□□□ 1.13
SHH-205ENST00000472308 PPP2R2DQ66LE6 453 aa22.12■■□□□ 1.13
SHH-205ENST00000472308 CTR9Q6PD62 1173 aa22.12■■□□□ 1.13
SHH-205ENST00000472308 CXCL17Q6UXB2 119 aa22.12■■□□□ 1.13
SHH-205ENST00000472308 CCDC144CPQ8IYA2 1237 aa22.12■■□□□ 1.13
SHH-205ENST00000472308 CPXCR1Q8N123 301 aa22.12■■□□□ 1.13
SHH-205ENST00000472308 MICALL1Q8N3F8 863 aa22.12■■□□□ 1.13
SHH-205ENST00000472308 NOC4LQ9BVI4 516 aaKnown RBP22.12■■□□□ 1.13
SHH-205ENST00000472308 WNT8AQ9H1J5 351 aa22.12■■□□□ 1.13
SHH-205ENST00000472308 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.11■■□□□ 1.13
SHH-205ENST00000472308 SLC4A3P48751 1232 aa22.11■■□□□ 1.13
SHH-205ENST00000472308 CCL23P55773 120 aa22.11■■□□□ 1.13
SHH-205ENST00000472308 FTSJ3Q8IY81 847 aaKnown RBP22.11■■□□□ 1.13
SHH-205ENST00000472308 PRPF38AQ8NAV1 312 aaKnown RBP22.11■■□□□ 1.13
SHH-205ENST00000472308 TSPYL2Q9H2G4 693 aaPredicted RBP22.11■■□□□ 1.13
SHH-205ENST00000472308 RAVER2Q9HCJ3 691 aaKnown RBP22.11■■□□□ 1.13
SHH-205ENST00000472308 F5H6K3 240 aa22.1■■□□□ 1.13
SHH-205ENST00000472308 PTGS1P23219 599 aa22.1■■□□□ 1.13
SHH-205ENST00000472308 KLRC3Q07444 240 aa22.1■■□□□ 1.13
SHH-205ENST00000472308 AMOTL1Q8IY63 956 aa22.1■■□□□ 1.13
SHH-205ENST00000472308 ANKRD35Q8N283 1001 aa22.1■■□□□ 1.13
SHH-205ENST00000472308 SLC38A10Q9HBR0 1119 aa22.1■■□□□ 1.13
SHH-205ENST00000472308 PAG1Q9NWQ8 432 aa22.1■■□□□ 1.13
SHH-205ENST00000472308 ERC2O15083 957 aa22.09■■□□□ 1.13
SHH-205ENST00000472308 TRPV6Q9H1D0 765 aa22.09■■□□□ 1.13
SHH-205ENST00000472308 GNEQ9Y223 722 aaKnown RBP22.09■■□□□ 1.13
SHH-205ENST00000472308 PCDHA11Q9Y5I1 949 aa22.09■■□□□ 1.13
SHH-205ENST00000472308 SLC4A4Q9Y6R1 1079 aa22.09■■□□□ 1.13
SHH-205ENST00000472308 LRRC37A2A6NM11 1700 aa22.09■■□□□ 1.13
SHH-205ENST00000472308 B4GALT4O60513 344 aa22.08■■□□□ 1.13
SHH-205ENST00000472308 RASA1P20936 1047 aa22.08■■□□□ 1.13
SHH-205ENST00000472308 CNTN2Q02246 1040 aa22.08■■□□□ 1.13
SHH-205ENST00000472308 ITGA7Q13683 1181 aa22.08■■□□□ 1.13
SHH-205ENST00000472308 EPHX3Q9H6B9 360 aa22.08■■□□□ 1.13
SHH-205ENST00000472308 NYAP2Q9P242 653 aa22.08■■□□□ 1.13
SHH-205ENST00000472308 SLC4A7Q9Y6M7 1214 aa22.08■■□□□ 1.13
SHH-205ENST00000472308 PRRC2BQ5JSZ5 2229 aaKnown RBP22.07■■□□□ 1.12
SHH-205ENST00000472308 ZBED4O75132 1171 aa22.07■■□□□ 1.12
SHH-205ENST00000472308 TNFAIP2Q03169 654 aa22.07■■□□□ 1.12
SHH-205ENST00000472308 AAK1Q2M2I8 961 aa22.07■■□□□ 1.12
SHH-205ENST00000472308 CLASRPQ8N2M8 674 aaKnown RBP22.07■■□□□ 1.12
SHH-205ENST00000472308 FAM133AQ8N9E0 248 aa22.07■■□□□ 1.12
SHH-205ENST00000472308 CHST13Q8NET6 341 aa22.07■■□□□ 1.12
SHH-205ENST00000472308 KIFC2Q96AC6 838 aa22.07■■□□□ 1.12
SHH-205ENST00000472308 LRFN3Q9BTN0 628 aa22.07■■□□□ 1.12
SHH-205ENST00000472308 FBXO40Q9UH90 709 aa22.07■■□□□ 1.12
SHH-205ENST00000472308 MTCH2Q9Y6C9 303 aa22.07■■□□□ 1.12
SHH-205ENST00000472308 RFXAPO00287 272 aa22.06■■□□□ 1.12
SHH-205ENST00000472308 CABYRO75952 493 aa22.06■■□□□ 1.12
SHH-205ENST00000472308 IFIT2P09913 472 aaKnown RBP22.06■■□□□ 1.12
SHH-205ENST00000472308 POU3F3P20264 500 aaPredicted RBP22.06■■□□□ 1.12
SHH-205ENST00000472308 FSCN1Q16658 493 aaKnown RBP22.06■■□□□ 1.12
SHH-205ENST00000472308 HSP90AB4PQ58FF6 505 aa22.06■■□□□ 1.12
SHH-205ENST00000472308 TLK2Q86UE8 772 aa22.06■■□□□ 1.12
SHH-205ENST00000472308 SCLYQ96I15 445 aa22.06■■□□□ 1.12
SHH-205ENST00000472308 AGBL1Q96MI9 1066 aa22.06■■□□□ 1.12
SHH-205ENST00000472308 BOLA2Q9H3K6 86 aa22.06■■□□□ 1.12
SHH-205ENST00000472308 ARIH1Q9Y4X5 557 aaPredicted RBP22.06■■□□□ 1.12
SHH-205ENST00000472308 DDX49Q9Y6V7 483 aaKnown RBP22.06■■□□□ 1.12
SHH-205ENST00000472308 IGKV6D-41A0A0C4DH26 115 aa22.05■■□□□ 1.12
SHH-205ENST00000472308 EPOPA6NHQ4 379 aa22.05■■□□□ 1.12
SHH-205ENST00000472308 ATP2A2P16615 1042 aaKnown RBP22.05■■□□□ 1.12
SHH-205ENST00000472308 UBE3CQ15386 1083 aa22.05■■□□□ 1.12
SHH-205ENST00000472308 SKIV2LQ15477 1246 aaKnown RBP22.05■■□□□ 1.12
SHH-205ENST00000472308 KIF1BPQ96EK5 621 aa22.05■■□□□ 1.12
SHH-205ENST00000472308 DDRGK1Q96HY6 314 aa22.05■■□□□ 1.12
SHH-205ENST00000472308 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.05■■□□□ 1.12
SHH-205ENST00000472308 PUS7LQ9H0K6 701 aaKnown RBP22.05■■□□□ 1.12
SHH-205ENST00000472308 HOMER2Q9NSB8 354 aa22.05■■□□□ 1.12
SHH-205ENST00000472308 ARPP21Q9UBL0 812 aaPredicted RBP22.05■■□□□ 1.12
SHH-205ENST00000472308 SOWAHBA6NEL2 793 aa22.04■■□□□ 1.12
SHH-205ENST00000472308 CA3P07451 260 aa22.04■■□□□ 1.12
SHH-205ENST00000472308 OAZ1P54368 228 aa22.04■■□□□ 1.12
SHH-205ENST00000472308 PSMC6P62333 389 aa22.04■■□□□ 1.12
SHH-205ENST00000472308 TTLL4Q14679 1199 aa22.04■■□□□ 1.12
SHH-205ENST00000472308 TMEM63BQ5T3F8 832 aa22.04■■□□□ 1.12
SHH-205ENST00000472308 NOL8Q76FK4 1167 aaKnown RBP22.04■■□□□ 1.12
SHH-205ENST00000472308 HAUS7Q99871 368 aa22.04■■□□□ 1.12
SHH-205ENST00000472308 CLIP2Q9UDT6 1046 aa22.04■■□□□ 1.12
SHH-205ENST00000472308 ZBBXA8MT70 800 aa22.03■■□□□ 1.12
SHH-205ENST00000472308 SMPD1P17405 629 aa22.03■■□□□ 1.12
SHH-205ENST00000472308 ATP5JP18859 108 aa22.03■■□□□ 1.12
SHH-205ENST00000472308 KRT40Q6A162 431 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms