RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 GCLCP48506 637 aaPredicted RBP17.19■□□□□ 0.34
COL9A3-209ENST00000469852 CAP1Q01518 475 aa17.19■□□□□ 0.34
COL9A3-209ENST00000469852 NTRK3Q16288 839 aa17.19■□□□□ 0.34
COL9A3-209ENST00000469852 CCDC174Q6PII3 467 aa17.19■□□□□ 0.34
COL9A3-209ENST00000469852 PIBF1Q8WXW3 757 aa17.19■□□□□ 0.34
COL9A3-209ENST00000469852 MTMR8Q96EF0 704 aa17.19■□□□□ 0.34
COL9A3-209ENST00000469852 PIGSQ96S52 555 aa17.19■□□□□ 0.34
COL9A3-209ENST00000469852 RAVER2Q9HCJ3 691 aaKnown RBP17.19■□□□□ 0.34
COL9A3-209ENST00000469852 RBM28Q9NW13 759 aaKnown RBP17.19■□□□□ 0.34
COL9A3-209ENST00000469852 MORF4L1Q9UBU8 362 aa17.19■□□□□ 0.34
COL9A3-209ENST00000469852 LIMCH1Q9UPQ0 1083 aa17.19■□□□□ 0.34
COL9A3-209ENST00000469852 RABGAP1Q9Y3P9 1069 aa17.19■□□□□ 0.34
COL9A3-209ENST00000469852 DHX16O60231 1041 aaKnown RBP17.18■□□□□ 0.34
COL9A3-209ENST00000469852 PPP1R11O60927 126 aaPredicted RBP17.18■□□□□ 0.34
COL9A3-209ENST00000469852 ECM2O94769 699 aaPredicted RBP17.18■□□□□ 0.34
COL9A3-209ENST00000469852 ERVK-9P63128 1117 aa17.18■□□□□ 0.34
COL9A3-209ENST00000469852 ERVK-24P63145 666 aa17.18■□□□□ 0.34
COL9A3-209ENST00000469852 CDC37Q16543 378 aaPredicted RBP17.18■□□□□ 0.34
COL9A3-209ENST00000469852 FAM110CQ1W6H9 321 aa17.18■□□□□ 0.34
COL9A3-209ENST00000469852 QRICH1Q2TAL8 776 aa17.18■□□□□ 0.34
COL9A3-209ENST00000469852 CPXCR1Q8N123 301 aa17.18■□□□□ 0.34
COL9A3-209ENST00000469852 GTF3C6Q969F1 213 aa17.18■□□□□ 0.34
COL9A3-209ENST00000469852 AGBL1Q96MI9 1066 aa17.18■□□□□ 0.34
COL9A3-209ENST00000469852 SPZ1Q9BXG8 430 aa17.18■□□□□ 0.34
COL9A3-209ENST00000469852 SLKQ9H2G2 1235 aaPredicted RBP17.18■□□□□ 0.34
COL9A3-209ENST00000469852 ZBED4O75132 1171 aa17.17■□□□□ 0.34
COL9A3-209ENST00000469852 CTDNEP1O95476 244 aa17.17■□□□□ 0.34
COL9A3-209ENST00000469852 CTGFP29279 349 aa17.17■□□□□ 0.34
COL9A3-209ENST00000469852 GNAQP50148 359 aa17.17■□□□□ 0.34
COL9A3-209ENST00000469852 PLS1Q14651 629 aa17.17■□□□□ 0.34
COL9A3-209ENST00000469852 HOMER1Q86YM7 354 aa17.17■□□□□ 0.34
COL9A3-209ENST00000469852 MB21D1Q8N884 522 aa17.17■□□□□ 0.34
COL9A3-209ENST00000469852 GTF3C2Q8WUA4 911 aaPredicted RBP17.17■□□□□ 0.34
COL9A3-209ENST00000469852 PHKBQ93100 1093 aa17.17■□□□□ 0.34
COL9A3-209ENST00000469852 MOV10L1Q9BXT6 1211 aaKnown RBP17.17■□□□□ 0.34
COL9A3-209ENST00000469852 SPATC1LQ9H0A9 340 aa17.17■□□□□ 0.34
COL9A3-209ENST00000469852 PORCNQ9H237 461 aa17.17■□□□□ 0.34
COL9A3-209ENST00000469852 RIPK3Q9Y572 518 aa17.17■□□□□ 0.34
COL9A3-209ENST00000469852 MGAMO43451 1857 aa17.16■□□□□ 0.34
COL9A3-209ENST00000469852 GPR25O00155 361 aa17.16■□□□□ 0.34
COL9A3-209ENST00000469852 SNRNP48Q6IEG0 339 aaKnown RBP17.16■□□□□ 0.34
COL9A3-209ENST00000469852 GPRC5AQ8NFJ5 357 aa17.16■□□□□ 0.34
COL9A3-209ENST00000469852 LZTS2Q9BRK4 669 aa17.16■□□□□ 0.34
COL9A3-209ENST00000469852 ARHGAP39Q9C0H5 1083 aa17.16■□□□□ 0.34
COL9A3-209ENST00000469852 ATP2A1O14983 1001 aa17.15■□□□□ 0.34
COL9A3-209ENST00000469852 ZBTB5O15062 677 aa17.15■□□□□ 0.34
COL9A3-209ENST00000469852 ICAM1P05362 532 aa17.15■□□□□ 0.34
COL9A3-209ENST00000469852 IFNAR1P17181 557 aa17.15■□□□□ 0.34
COL9A3-209ENST00000469852 SMARCA1P28370 1054 aa17.15■□□□□ 0.34
COL9A3-209ENST00000469852 STAT3P40763 770 aa17.15■□□□□ 0.34
COL9A3-209ENST00000469852 SLC4A3P48751 1232 aa17.15■□□□□ 0.34
COL9A3-209ENST00000469852 PPP2R5BQ15173 497 aa17.15■□□□□ 0.34
COL9A3-209ENST00000469852 CCDC83Q8IWF9 413 aa17.15■□□□□ 0.34
COL9A3-209ENST00000469852 TMX3Q96JJ7 454 aa17.15■□□□□ 0.34
COL9A3-209ENST00000469852 EFCC1Q9HA90 598 aa17.15■□□□□ 0.34
COL9A3-209ENST00000469852 CCDC196A0A1B0GTZ2 297 aa17.14■□□□□ 0.33
COL9A3-209ENST00000469852 FDX1P10109 184 aa17.14■□□□□ 0.33
COL9A3-209ENST00000469852 MLLT1Q03111 559 aaPredicted RBP17.14■□□□□ 0.33
COL9A3-209ENST00000469852 USH1GQ495M9 461 aa17.14■□□□□ 0.33
COL9A3-209ENST00000469852 RIOX2Q8IUF8 465 aa17.14■□□□□ 0.33
COL9A3-209ENST00000469852 ZNF296Q8WUU4 475 aaPredicted RBP17.14■□□□□ 0.33
COL9A3-209ENST00000469852 ZSCAN31Q96LW9 406 aaPredicted RBP17.14■□□□□ 0.33
COL9A3-209ENST00000469852 TEX13BQ9BXU2 312 aa17.14■□□□□ 0.33
COL9A3-209ENST00000469852 CCPG1Q9ULG6 757 aa17.14■□□□□ 0.33
COL9A3-209ENST00000469852 CTDP1Q9Y5B0 961 aaPredicted RBP17.14■□□□□ 0.33
COL9A3-209ENST00000469852 V9GY48 417 aaPredicted RBP17.14■□□□□ 0.33
COL9A3-209ENST00000469852 PLXNB2O15031 1838 aa17.14■□□□□ 0.33
COL9A3-209ENST00000469852 DOCK3Q8IZD9 2030 aa17.13■□□□□ 0.33
COL9A3-209ENST00000469852 PNMA6FA0A0J9YX94 578 aa17.13■□□□□ 0.33
COL9A3-209ENST00000469852 JAK2O60674 1132 aa17.13■□□□□ 0.33
COL9A3-209ENST00000469852 ERCC3P19447 782 aa17.13■□□□□ 0.33
COL9A3-209ENST00000469852 OAZ1P54368 228 aa17.13■□□□□ 0.33
COL9A3-209ENST00000469852 LACTBP83111 547 aaPredicted RBP17.13■□□□□ 0.33
COL9A3-209ENST00000469852 SP3Q02447 781 aa17.13■□□□□ 0.33
COL9A3-209ENST00000469852 PKN1Q16512 942 aa17.13■□□□□ 0.33
COL9A3-209ENST00000469852 MUM1L1Q5H9M0 696 aa17.13■□□□□ 0.33
COL9A3-209ENST00000469852 IL27Q8NEV9 243 aa17.13■□□□□ 0.33
COL9A3-209ENST00000469852 CD99L2Q8TCZ2 262 aa17.13■□□□□ 0.33
COL9A3-209ENST00000469852 COA7Q96BR5 231 aa17.13■□□□□ 0.33
COL9A3-209ENST00000469852 RRP36Q96EU6 259 aaKnown RBP17.13■□□□□ 0.33
COL9A3-209ENST00000469852 SLC26A6Q9BXS9 759 aa17.13■□□□□ 0.33
COL9A3-209ENST00000469852 SH2B1Q9NRF2 756 aaPredicted RBP17.13■□□□□ 0.33
COL9A3-209ENST00000469852 HOMER2Q9NSB8 354 aa17.13■□□□□ 0.33
COL9A3-209ENST00000469852 CPLX1O14810 134 aa17.12■□□□□ 0.33
COL9A3-209ENST00000469852 ALAS1P13196 640 aa17.12■□□□□ 0.33
COL9A3-209ENST00000469852 MCM2P49736 904 aa17.12■□□□□ 0.33
COL9A3-209ENST00000469852 NCAPG2Q86XI2 1143 aa17.12■□□□□ 0.33
COL9A3-209ENST00000469852 FBXO11Q86XK2 927 aa17.12■□□□□ 0.33
COL9A3-209ENST00000469852 NSUN7Q8NE18 718 aaKnown RBP17.12■□□□□ 0.33
COL9A3-209ENST00000469852 GPKOWQ92917 476 aaPredicted RBP eCLIP17.12■□□□□ 0.33
COL9A3-209ENST00000469852 SHISA4Q96DD7 197 aa17.12■□□□□ 0.33
COL9A3-209ENST00000469852 RBBP6Q7Z6E9 1792 aaKnown RBP17.11■□□□□ 0.33
COL9A3-209ENST00000469852 PTPDC1A2A3K4 754 aa17.11■□□□□ 0.33
COL9A3-209ENST00000469852 PRPF3O43395 683 aaKnown RBP17.11■□□□□ 0.33
COL9A3-209ENST00000469852 FKTNO75072 461 aa17.11■□□□□ 0.33
COL9A3-209ENST00000469852 FMNL1O95466 1100 aaPredicted RBP17.11■□□□□ 0.33
COL9A3-209ENST00000469852 FDPSP14324 419 aaKnown RBP17.11■□□□□ 0.33
COL9A3-209ENST00000469852 NOM1Q5C9Z4 860 aaKnown RBP17.11■□□□□ 0.33
COL9A3-209ENST00000469852 WWC2Q6AWC2 1192 aa17.11■□□□□ 0.33
COL9A3-209ENST00000469852 TYW1BQ6NUM6 668 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms