RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 SLC45A1Q9Y2W3 748 aa6.78□□□□□ -1.32
HMGB1-207ENST00000468384 PLXNB2O15031 1838 aa6.78□□□□□ -1.32
HMGB1-207ENST00000468384 NF1P21359 2839 aa6.77□□□□□ -1.32
HMGB1-207ENST00000468384 DNHD1Q96M86 4753 aa6.77□□□□□ -1.33
HMGB1-207ENST00000468384 A0A1B0GUL7 405 aa6.77□□□□□ -1.33
HMGB1-207ENST00000468384 LOC730098B7Z3J9 87 aa6.77□□□□□ -1.33
HMGB1-207ENST00000468384 J3QKU1 62 aa6.77□□□□□ -1.33
HMGB1-207ENST00000468384 SLC30A4O14863 429 aa6.77□□□□□ -1.33
HMGB1-207ENST00000468384 MBTPS2O43462 519 aa6.77□□□□□ -1.33
HMGB1-207ENST00000468384 TNFAIP1Q13829 316 aa6.77□□□□□ -1.33
HMGB1-207ENST00000468384 C19orf48Q6RUI8 117 aa6.77□□□□□ -1.33
HMGB1-207ENST00000468384 ZNF605Q86T29 641 aa6.77□□□□□ -1.33
HMGB1-207ENST00000468384 ZFPM1Q8IX07 1006 aa6.77□□□□□ -1.33
HMGB1-207ENST00000468384 ZNF34Q8IZ26 560 aa6.77□□□□□ -1.33
HMGB1-207ENST00000468384 SUMF1Q8NBK3 374 aa6.77□□□□□ -1.33
HMGB1-207ENST00000468384 PROCA1Q8NCQ7 364 aaPredicted RBP6.77□□□□□ -1.33
HMGB1-207ENST00000468384 SOCS4Q8WXH5 440 aa6.77□□□□□ -1.33
HMGB1-207ENST00000468384 ZCCHC14Q8WYQ9 949 aaKnown RBP6.77□□□□□ -1.33
HMGB1-207ENST00000468384 POM121Q96HA1 1249 aa6.77□□□□□ -1.33
HMGB1-207ENST00000468384 TMEM39BQ9GZU3 492 aa6.77□□□□□ -1.33
HMGB1-207ENST00000468384 ZFHX3Q15911 3703 aa6.77□□□□□ -1.33
HMGB1-207ENST00000468384 UTYO14607 1347 aa6.76□□□□□ -1.33
HMGB1-207ENST00000468384 ADAMTS20P59510 1910 aa6.76□□□□□ -1.33
HMGB1-207ENST00000468384 CXCL11O14625 94 aa6.76□□□□□ -1.33
HMGB1-207ENST00000468384 PRB1P04280 392 aa6.76□□□□□ -1.33
HMGB1-207ENST00000468384 PDIA4P13667 645 aaKnown RBP6.76□□□□□ -1.33
HMGB1-207ENST00000468384 TIMP2P16035 220 aa6.76□□□□□ -1.33
HMGB1-207ENST00000468384 WNT7BP56706 349 aa6.76□□□□□ -1.33
HMGB1-207ENST00000468384 CBX2Q14781 532 aaPredicted RBP6.76□□□□□ -1.33
HMGB1-207ENST00000468384 COL19A1Q14993 1142 aa6.76□□□□□ -1.33
HMGB1-207ENST00000468384 CFAP100Q494V2 611 aa6.76□□□□□ -1.33
HMGB1-207ENST00000468384 MORN1Q5T089 497 aa6.76□□□□□ -1.33
HMGB1-207ENST00000468384 FASTKD5Q7L8L6 764 aaKnown RBP6.76□□□□□ -1.33
HMGB1-207ENST00000468384 AEBP1Q8IUX7 1158 aa6.76□□□□□ -1.33
HMGB1-207ENST00000468384 VWA5B2Q8N398 1253 aa6.76□□□□□ -1.33
HMGB1-207ENST00000468384 UTP14AQ9BVJ6 771 aaKnown RBP6.76□□□□□ -1.33
HMGB1-207ENST00000468384 ANKIB1Q9P2G1 1089 aa6.76□□□□□ -1.33
HMGB1-207ENST00000468384 NCDNQ9UBB6 729 aa6.76□□□□□ -1.33
HMGB1-207ENST00000468384 ANKRD36CQ5JPF3 1778 aa6.75□□□□□ -1.33
HMGB1-207ENST00000468384 ZBBXA8MT70 800 aa6.75□□□□□ -1.33
HMGB1-207ENST00000468384 C1QL1O75973 258 aa6.75□□□□□ -1.33
HMGB1-207ENST00000468384 CLCN5P51795 746 aa6.75□□□□□ -1.33
HMGB1-207ENST00000468384 CLUL1Q15846 466 aa6.75□□□□□ -1.33
HMGB1-207ENST00000468384 PTPN21Q16825 1174 aa6.75□□□□□ -1.33
HMGB1-207ENST00000468384 KRTAP21-3Q3LHN1 58 aa6.75□□□□□ -1.33
HMGB1-207ENST00000468384 MFSD14CQ5VZR4 134 aa6.75□□□□□ -1.33
HMGB1-207ENST00000468384 USP6NLQ92738 828 aa6.75□□□□□ -1.33
HMGB1-207ENST00000468384 SUGCTQ9HAC7 445 aa6.75□□□□□ -1.33
HMGB1-207ENST00000468384 PHF24Q9UPV7 400 aa6.75□□□□□ -1.33
HMGB1-207ENST00000468384 PHIPQ8WWQ0 1821 aa6.75□□□□□ -1.33
HMGB1-207ENST00000468384 MAP3K15Q6ZN16 1313 aa6.75□□□□□ -1.33
HMGB1-207ENST00000468384 A0A1B0GTL3 188 aa6.74□□□□□ -1.33
HMGB1-207ENST00000468384 INPP5BP32019 993 aa6.74□□□□□ -1.33
HMGB1-207ENST00000468384 ICAM3P32942 547 aa6.74□□□□□ -1.33
HMGB1-207ENST00000468384 LTBRP36941 435 aa6.74□□□□□ -1.33
HMGB1-207ENST00000468384 GTF2IP78347 998 aa6.74□□□□□ -1.33
HMGB1-207ENST00000468384 SMAD4Q13485 552 aaKnown RBP6.74□□□□□ -1.33
HMGB1-207ENST00000468384 PARP10Q53GL7 1025 aa6.74□□□□□ -1.33
HMGB1-207ENST00000468384 GADL1Q6ZQY3 521 aa6.74□□□□□ -1.33
HMGB1-207ENST00000468384 CCDC105Q8IYK2 499 aa6.74□□□□□ -1.33
HMGB1-207ENST00000468384 NLRP7Q8WX94 980 aa6.74□□□□□ -1.33
HMGB1-207ENST00000468384 PPP1R12CQ9BZL4 782 aa6.74□□□□□ -1.33
HMGB1-207ENST00000468384 FAM217BQ9NTX9 383 aaPredicted RBP6.74□□□□□ -1.33
HMGB1-207ENST00000468384 POLR3EQ9NVU0 708 aa6.74□□□□□ -1.33
HMGB1-207ENST00000468384 GPSM3Q9Y4H4 160 aa6.74□□□□□ -1.33
HMGB1-207ENST00000468384 TLN1Q9Y490 2541 aaKnown RBP6.74□□□□□ -1.33
HMGB1-207ENST00000468384 A0A0G2JLL6 359 aaPredicted RBP6.73□□□□□ -1.33
HMGB1-207ENST00000468384 CYP2C18P33260 490 aa6.73□□□□□ -1.33
HMGB1-207ENST00000468384 RGS2P41220 211 aa6.73□□□□□ -1.33
HMGB1-207ENST00000468384 ANO1Q5XXA6 986 aa6.73□□□□□ -1.33
HMGB1-207ENST00000468384 TTLL5Q6EMB2 1281 aa6.73□□□□□ -1.33
HMGB1-207ENST00000468384 ZC3H14Q6PJT7 736 aaKnown RBP6.73□□□□□ -1.33
HMGB1-207ENST00000468384 PRRT2Q7Z6L0 340 aaPredicted RBP6.73□□□□□ -1.33
HMGB1-207ENST00000468384 DTWD2Q8NBA8 298 aa6.73□□□□□ -1.33
HMGB1-207ENST00000468384 TRPV1Q8NER1 839 aa6.73□□□□□ -1.33
HMGB1-207ENST00000468384 NETO1Q8TDF5 533 aa6.73□□□□□ -1.33
HMGB1-207ENST00000468384 APBA2Q99767 749 aa6.73□□□□□ -1.33
HMGB1-207ENST00000468384 CLDND1Q9NY35 253 aa6.73□□□□□ -1.33
HMGB1-207ENST00000468384 USP18Q9UMW8 372 aa6.73□□□□□ -1.33
HMGB1-207ENST00000468384 SLC27A5Q9Y2P5 690 aa6.73□□□□□ -1.33
HMGB1-207ENST00000468384 CELSR3Q9NYQ7 3312 aa6.73□□□□□ -1.33
HMGB1-207ENST00000468384 PTPRQQ9UMZ3 2332 aa6.73□□□□□ -1.33
HMGB1-207ENST00000468384 PCNX1Q96RV3 2341 aa6.72□□□□□ -1.33
HMGB1-207ENST00000468384 ECM29Q5VYK3 1845 aa6.72□□□□□ -1.33
HMGB1-207ENST00000468384 TGM1P22735 817 aa6.72□□□□□ -1.33
HMGB1-207ENST00000468384 GCLCP48506 637 aaPredicted RBP6.72□□□□□ -1.33
HMGB1-207ENST00000468384 PTSQ03393 145 aa6.72□□□□□ -1.33
HMGB1-207ENST00000468384 COL28A1Q2UY09 1125 aa6.72□□□□□ -1.33
HMGB1-207ENST00000468384 MYSM1Q5VVJ2 828 aa6.72□□□□□ -1.33
HMGB1-207ENST00000468384 METTL3Q86U44 580 aaKnown RBP6.72□□□□□ -1.33
HMGB1-207ENST00000468384 NGEFQ8N5V2 710 aa6.72□□□□□ -1.33
HMGB1-207ENST00000468384 EHBP1Q8NDI1 1231 aa6.72□□□□□ -1.33
HMGB1-207ENST00000468384 DDX1Q92499 740 aaKnown RBP6.72□□□□□ -1.33
HMGB1-207ENST00000468384 GATA6Q92908 595 aa6.72□□□□□ -1.33
HMGB1-207ENST00000468384 FAM84BQ96KN1 310 aaPredicted RBP6.72□□□□□ -1.33
HMGB1-207ENST00000468384 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.72□□□□□ -1.33
HMGB1-207ENST00000468384 ENAMQ9NRM1 1142 aa6.72□□□□□ -1.33
HMGB1-207ENST00000468384 FLRT1Q9NZU1 646 aa6.72□□□□□ -1.33
HMGB1-207ENST00000468384 ZNF70Q9UC06 446 aaPredicted RBP6.72□□□□□ -1.33
HMGB1-207ENST00000468384 SPG11Q96JI7 2443 aa6.71□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms