RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 TBC1D8BQ0IIM8 1120 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 TMCO3Q6UWJ1 677 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 TTLL7Q6ZT98 887 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 ZSCAN30Q86W11 494 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 HSCBQ8IWL3 235 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 MICALL1Q8N3F8 863 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 CRACR2BQ8N4Y2 399 aaPredicted RBP2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 ATRIPQ8WXE1 791 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 FAXDC2Q96IV6 333 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 SLC9A7Q96T83 725 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 VPS11Q9H270 941 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 IGFLR1Q9H665 355 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 KIAA1586Q9HCI6 787 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 TRIM39Q9HCM9 518 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 TRMT13Q9NUP7 481 aaKnown RBP2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 C14orf119Q9NWQ9 140 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 TPCN1Q9ULQ1 816 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 KCNH4Q9UQ05 1017 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 A0A1W2PNR3 127 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 PPM1BO75688 479 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 GHRHP01286 108 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 RPN1P04843 607 aaKnown RBP2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 NR3C2P08235 984 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 TYRP1P17643 537 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 LPOP22079 712 aaPredicted RBP2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 GTF2A2P52657 109 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 ZNF143P52747 638 aaPredicted RBP2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 SCAND1P57086 179 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 FAM193AP78312 1265 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 CCINQ13939 588 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 ANO4Q32M45 955 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 LCE2CQ5TA81 110 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 MFSD4BQ5TF39 518 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 MZT2BQ6NZ67 158 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 HDXQ7Z353 690 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 CCDC144CPQ8IYA2 1237 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 GRAMD1CQ8IYS0 662 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 OR8H2Q8N162 312 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 TRIM11Q96F44 468 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 AIFM3Q96NN9 605 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 ALDH8A1Q9H2A2 487 aaPredicted RBP2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 GPAMQ9HCL2 828 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 TOMM22Q9NS69 142 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 RTEL1Q9NZ71 1219 aa2.76□□□□□ -1.97
CCDC88A-208ENST00000444458 BLACEA4D250 179 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 MEIS3P2A8K0S8 358 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 CPP00450 1065 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 EPHX1P07099 455 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 FGFR1P11362 822 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 RHCEP18577 417 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 NFKB1P19838 968 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 GGCXP38435 758 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 RHDQ02161 417 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 PCDH1Q08174 1060 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 CCDC184Q52MB2 194 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 FAM180BQ6P0A1 224 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 POMZP3Q6PJE2 187 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 LVRNQ6Q4G3 990 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 CASC1Q6TDU7 716 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 LDHAL6AQ6ZMR3 332 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 PRICKLE2Q7Z3G6 844 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 ZNF227Q86WZ6 799 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 ANKRD18AQ8IVF6 992 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 ZNF295-AS1Q8N0V1 137 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 KCTD13Q8WZ19 329 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 FERMT2Q96AC1 680 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 PGBD4Q96DM1 585 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 KLRG1Q96E93 195 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 ZIC5Q96T25 663 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 SLC13A1Q9BZW2 595 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 MTFR1LQ9H019 292 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 MUC3BQ9H195 1237 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 RIC8AQ9NPQ8 531 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 DIS3Q9Y2L1 958 aaKnown RBP2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 CEP83Q9Y592 693 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 KLHL33A6NCF5 533 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 SPDYE3A6NKU9 549 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 DDX3YO15523 660 aaKnown RBP2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 EGFRP00533 1210 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 HSD3B1P14060 373 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 POU3F2P20265 443 aaPredicted RBP2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 BMP6P22004 513 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 SMARCA1P28370 1054 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 ADD2P35612 726 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 GRIK1P39086 918 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 MAPK10P53779 464 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 ETF1P62495 437 aaKnown RBP2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 TNFAIP2Q03169 654 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 DDB1Q16531 1140 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 CCDC38Q502W7 563 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 INTS3Q68E01 1043 aaKnown RBP2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 ITPRIPL1Q6GPH6 555 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 ZCCHC8Q6NZY4 707 aaKnown RBP2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 SRGAP1Q7Z6B7 1085 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 ZC3H7AQ8IWR0 971 aaKnown RBP2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 TAB3Q8N5C8 712 aaPredicted RBP2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 ADCY4Q8NFM4 1077 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 PPIL4Q8WUA2 492 aaKnown RBP eCLIP2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 PTPRN2Q92932 1015 aa2.75□□□□□ -1.97
CCDC88A-208ENST00000444458 GCC1Q96CN9 775 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms