RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 NT5DC1Q5TFE4 455 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.08□□□□□ -0.8
COPB1-202ENST00000439561 AMOTL1Q8IY63 956 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 CNOT6LQ96LI5 555 aaKnown RBP10.08□□□□□ -0.8
COPB1-202ENST00000439561 UIMC1Q96RL1 719 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 ZSCAN10Q96SZ4 725 aaPredicted RBP10.08□□□□□ -0.8
COPB1-202ENST00000439561 NCAPGQ9BPX3 1015 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 EPB41L5Q9HCM4 733 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 LIMA1Q9UHB6 759 aaKnown RBP10.08□□□□□ -0.8
COPB1-202ENST00000439561 NFU1Q9UMS0 254 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 LGALS16A8MUM7 142 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 RAD21O60216 631 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 PLEKP08567 350 aaPredicted RBP10.08□□□□□ -0.8
COPB1-202ENST00000439561 GNAT2P19087 354 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 HERVK_113P62684 666 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 GUCY1A3Q02108 690 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 RASSF7Q02833 373 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 DYMQ7RTS9 669 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 FAM114A1Q8IWE2 563 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 TRIM58Q8NG06 486 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 ARL8AQ96BM9 186 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 PYM1Q9BRP8 204 aaKnown RBP10.08□□□□□ -0.8
COPB1-202ENST00000439561 STX8Q9UNK0 236 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 CHD2O14647 1828 aaKnown RBP10.08□□□□□ -0.8
COPB1-202ENST00000439561 KDM6AO15550 1401 aaPredicted RBP10.08□□□□□ -0.8
COPB1-202ENST00000439561 PDE2AO00408 941 aaPredicted RBP10.08□□□□□ -0.8
COPB1-202ENST00000439561 NMT2O60551 498 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 KCTD19Q17RG1 926 aaPredicted RBP10.08□□□□□ -0.8
COPB1-202ENST00000439561 INF2Q27J81 1249 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 LETM2Q2VYF4 491 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 CEP85LQ5SZL2 805 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 CCDC121Q6ZUS5 278 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 VIPAS39Q9H9C1 493 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 SLC39A2Q9NP94 309 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 BACH1O14867 736 aa10.07□□□□□ -0.8
COPB1-202ENST00000439561 HNRNPH1P31943 449 aaKnown RBP10.07□□□□□ -0.8
COPB1-202ENST00000439561 NF2P35240 595 aa10.07□□□□□ -0.8
COPB1-202ENST00000439561 CCDC40Q4G0X9 1142 aa10.07□□□□□ -0.8
COPB1-202ENST00000439561 LRP10Q7Z4F1 713 aa10.07□□□□□ -0.8
COPB1-202ENST00000439561 HPS3Q969F9 1004 aa10.07□□□□□ -0.8
COPB1-202ENST00000439561 MS4A14Q96JA4 679 aa10.07□□□□□ -0.8
COPB1-202ENST00000439561 TSGA10Q9BZW7 698 aa10.07□□□□□ -0.8
COPB1-202ENST00000439561 FRMD3A2A2Y4 597 aa10.07□□□□□ -0.8
COPB1-202ENST00000439561 SMIM23A6NLE4 172 aa10.07□□□□□ -0.8
COPB1-202ENST00000439561 USP17L12C9JPN9 530 aa10.07□□□□□ -0.8
COPB1-202ENST00000439561 USP17L21D6R901 530 aa10.07□□□□□ -0.8
COPB1-202ENST00000439561 PSMD14O00487 310 aa10.07□□□□□ -0.8
COPB1-202ENST00000439561 ATP6V1AP38606 617 aa10.07□□□□□ -0.8
COPB1-202ENST00000439561 EIF4A3P38919 411 aaKnown RBP10.07□□□□□ -0.8
COPB1-202ENST00000439561 DYNLL1P63167 89 aaKnown RBP10.07□□□□□ -0.8
COPB1-202ENST00000439561 SPATA4Q8NEY3 305 aa10.07□□□□□ -0.8
COPB1-202ENST00000439561 REXO2Q9Y3B8 237 aaKnown RBP10.07□□□□□ -0.8
COPB1-202ENST00000439561 RIPOR2Q9Y4F9 1068 aa10.07□□□□□ -0.8
COPB1-202ENST00000439561 HYOU1Q9Y4L1 999 aa10.07□□□□□ -0.8
COPB1-202ENST00000439561 ITIH6Q6UXX5 1313 aa10.07□□□□□ -0.8
COPB1-202ENST00000439561 RGPD8O14715 1765 aaPredicted RBP10.06□□□□□ -0.8
COPB1-202ENST00000439561 EIF3HO15372 352 aaKnown RBP eCLIP10.06□□□□□ -0.86e-6■■■■□ 25.8
COPB1-202ENST00000439561 HEXIM1O94992 359 aaKnown RBP10.06□□□□□ -0.8
COPB1-202ENST00000439561 FTCDO95954 541 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 PMS1P54277 932 aaKnown RBP10.06□□□□□ -0.8
COPB1-202ENST00000439561 APBA1Q02410 837 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 IFFO1Q0D2I5 559 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 APTXQ7Z2E3 356 aaKnown RBP10.06□□□□□ -0.8
COPB1-202ENST00000439561 TMC4Q7Z404 712 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 IFT20Q8IY31 132 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 ENAHQ8N8S7 591 aaPredicted RBP10.06□□□□□ -0.8
COPB1-202ENST00000439561 KRT12Q99456 494 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 CCDC113Q9H0I3 377 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 GOPCQ9HD26 462 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 ASAP1Q9ULH1 1129 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 RCCD1A6NED2 376 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 SEC24CP53992 1094 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 EPHB4P54760 987 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 AMPD2Q01433 879 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 ACTN3Q08043 901 aaPredicted RBP10.06□□□□□ -0.8
COPB1-202ENST00000439561 UBLCP1Q8WVY7 318 aaPredicted RBP10.06□□□□□ -0.8
COPB1-202ENST00000439561 CABS1Q96KC9 395 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 NUP58Q9BVL2 599 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 LUC7LQ9NQ29 371 aaKnown RBP10.06□□□□□ -0.8
COPB1-202ENST00000439561 STIM2Q9P246 746 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.06□□□□□ -0.8
COPB1-202ENST00000439561 CAPN6Q9Y6Q1 641 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 ABCC6O95255 1503 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 BICDL2A1A5D9 508 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 SCG2P13521 617 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 EEF1GP26641 437 aaKnown RBP10.06□□□□□ -0.8
COPB1-202ENST00000439561 ZBED6P86452 979 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 E2F5Q15329 346 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 BICDL1Q6ZP65 573 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 TAX1BP1Q86VP1 789 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 TRIM31Q9BZY9 425 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 MKNK2Q9HBH9 465 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 RBM28Q9NW13 759 aaKnown RBP10.06□□□□□ -0.8
COPB1-202ENST00000439561 PACSIN2Q9UNF0 486 aaPredicted RBP10.06□□□□□ -0.8
COPB1-202ENST00000439561 PCDHA13Q9Y5I0 950 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 OVOS2A0A0G2JMS6 1433 aa10.06□□□□□ -0.8
COPB1-202ENST00000439561 LRRC37A3O60309 1634 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 PDE8AO60658 829 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 PBX1P40424 430 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 GYG1P46976 350 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms