RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 ITGAVP06756 1048 aa5.5□□□□□ -1.53
HMGB3-203ENST00000430118 NEFMP07197 916 aa5.5□□□□□ -1.53
HMGB3-203ENST00000430118 PABPC1P11940 636 aaKnown RBP5.5□□□□□ -1.53
HMGB3-203ENST00000430118 ITGA4P13612 1032 aa5.5□□□□□ -1.53
HMGB3-203ENST00000430118 POU3F3P20264 500 aaPredicted RBP5.5□□□□□ -1.53
HMGB3-203ENST00000430118 GABREP78334 506 aa5.5□□□□□ -1.53
HMGB3-203ENST00000430118 TTLL4Q14679 1199 aa5.5□□□□□ -1.53
HMGB3-203ENST00000430118 NKG7Q16617 165 aa5.5□□□□□ -1.53
HMGB3-203ENST00000430118 ODR4Q5SWX8 454 aa5.5□□□□□ -1.53
HMGB3-203ENST00000430118 AXDND1Q5T1B0 1012 aaPredicted RBP5.5□□□□□ -1.53
HMGB3-203ENST00000430118 PRAMEF13Q5VWM6 474 aa5.5□□□□□ -1.53
HMGB3-203ENST00000430118 FOXB2Q5VYV0 432 aa5.5□□□□□ -1.53
HMGB3-203ENST00000430118 ZNF772Q68DY9 489 aaPredicted RBP5.5□□□□□ -1.53
HMGB3-203ENST00000430118 WWC2Q6AWC2 1192 aa5.5□□□□□ -1.53
HMGB3-203ENST00000430118 IGF2-ASQ6U949 168 aa5.5□□□□□ -1.53
HMGB3-203ENST00000430118 C8orf86Q6ZUL3 223 aa5.5□□□□□ -1.53
HMGB3-203ENST00000430118 DHX37Q8IY37 1157 aaKnown RBP5.5□□□□□ -1.53
HMGB3-203ENST00000430118 AFAP1L2Q8N4X5 818 aa5.5□□□□□ -1.53
HMGB3-203ENST00000430118 UBASH3BQ8TF42 649 aa5.5□□□□□ -1.53
HMGB3-203ENST00000430118 COX4I2Q96KJ9 171 aa5.5□□□□□ -1.53
HMGB3-203ENST00000430118 MRGPRX3Q96LB0 322 aa5.5□□□□□ -1.53
HMGB3-203ENST00000430118 MRPL18Q9H0U6 180 aaKnown RBP5.5□□□□□ -1.53
HMGB3-203ENST00000430118 RGS17Q9UGC6 210 aaPredicted RBP5.5□□□□□ -1.53
HMGB3-203ENST00000430118 SFMBT1Q9UHJ3 866 aa5.5□□□□□ -1.53
HMGB3-203ENST00000430118 PCOLCE2Q9UKZ9 415 aa5.5□□□□□ -1.53
HMGB3-203ENST00000430118 AP4E1Q9UPM8 1137 aa5.5□□□□□ -1.53
HMGB3-203ENST00000430118 KIAA1107Q9UPP5 1409 aa5.49□□□□□ -1.53
HMGB3-203ENST00000430118 CD247P20963 164 aa5.49□□□□□ -1.53
HMGB3-203ENST00000430118 AMPD1P23109 780 aa5.49□□□□□ -1.53
HMGB3-203ENST00000430118 L1CAMP32004 1257 aa5.49□□□□□ -1.53
HMGB3-203ENST00000430118 ETV3P41162 512 aa5.49□□□□□ -1.53
HMGB3-203ENST00000430118 NFKB2Q00653 900 aa5.49□□□□□ -1.53
HMGB3-203ENST00000430118 GRB10Q13322 594 aa5.49□□□□□ -1.53
HMGB3-203ENST00000430118 FAM209AQ5JX71 171 aa5.49□□□□□ -1.53
HMGB3-203ENST00000430118 TRAPPC3LQ5T215 181 aa5.49□□□□□ -1.53
HMGB3-203ENST00000430118 NBPF12Q5TAG4 269 aaPredicted RBP5.49□□□□□ -1.53
HMGB3-203ENST00000430118 MEX3CQ5U5Q3 659 aaKnown RBP5.49□□□□□ -1.53
HMGB3-203ENST00000430118 TDRD10Q5VZ19 366 aaKnown RBP5.49□□□□□ -1.53
HMGB3-203ENST00000430118 NSMFQ6X4W1 530 aa5.49□□□□□ -1.53
HMGB3-203ENST00000430118 KIAA1211Q6ZU35 1233 aa5.49□□□□□ -1.53
HMGB3-203ENST00000430118 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.49□□□□□ -1.53
HMGB3-203ENST00000430118 NECAB2Q7Z6G3 386 aa5.49□□□□□ -1.53
HMGB3-203ENST00000430118 LRRTM3Q86VH5 581 aa5.49□□□□□ -1.53
HMGB3-203ENST00000430118 TRIM59Q8IWR1 403 aa5.49□□□□□ -1.53
HMGB3-203ENST00000430118 C7orf61Q8IZ16 206 aa5.49□□□□□ -1.53
HMGB3-203ENST00000430118 TMEM130Q8N3G9 435 aa5.49□□□□□ -1.53
HMGB3-203ENST00000430118 ARHGEF39Q8N4T4 335 aa5.49□□□□□ -1.53
HMGB3-203ENST00000430118 LRRN4CLQ8ND94 238 aa5.49□□□□□ -1.53
HMGB3-203ENST00000430118 BAHD1Q8TBE0 780 aaPredicted RBP5.49□□□□□ -1.53
HMGB3-203ENST00000430118 ISL2Q96A47 359 aa5.49□□□□□ -1.53
HMGB3-203ENST00000430118 FBXL18Q96ME1 805 aa5.49□□□□□ -1.53
HMGB3-203ENST00000430118 CEP131Q9UPN4 1083 aa5.49□□□□□ -1.53
HMGB3-203ENST00000430118 FAN1Q9Y2M0 1017 aa5.49□□□□□ -1.53
HMGB3-203ENST00000430118 EMC9Q9Y3B6 208 aa5.49□□□□□ -1.53
HMGB3-203ENST00000430118 JCADQ9P266 1359 aa5.49□□□□□ -1.53
HMGB3-203ENST00000430118 A0A0A0MRY4 1105 aa5.48□□□□□ -1.53
HMGB3-203ENST00000430118 SHISA8B8ZZ34 492 aa5.48□□□□□ -1.53
HMGB3-203ENST00000430118 CDKN1CP49918 316 aaPredicted RBP5.48□□□□□ -1.53
HMGB3-203ENST00000430118 MAP4K2Q12851 820 aa5.48□□□□□ -1.53
HMGB3-203ENST00000430118 AUHQ13825 339 aaKnown RBP5.48□□□□□ -1.53
HMGB3-203ENST00000430118 CBX2Q14781 532 aaPredicted RBP5.48□□□□□ -1.53
HMGB3-203ENST00000430118 FDX2Q6P4F2 183 aa5.48□□□□□ -1.53
HMGB3-203ENST00000430118 ARMCX6Q7L4S7 300 aa5.48□□□□□ -1.53
HMGB3-203ENST00000430118 MAMDC2Q7Z304 686 aaPredicted RBP5.48□□□□□ -1.53
HMGB3-203ENST00000430118 DDX42Q86XP3 938 aaKnown RBP eCLIP5.48□□□□□ -1.53
HMGB3-203ENST00000430118 SMYD4Q8IYR2 804 aaPredicted RBP5.48□□□□□ -1.53
HMGB3-203ENST00000430118 GSTCDQ8NEC7 633 aa5.48□□□□□ -1.53
HMGB3-203ENST00000430118 DNAJB8Q8NHS0 232 aa5.48□□□□□ -1.53
HMGB3-203ENST00000430118 RIN3Q8TB24 985 aa5.48□□□□□ -1.53
HMGB3-203ENST00000430118 PPP1R13LQ8WUF5 828 aa5.48□□□□□ -1.53
HMGB3-203ENST00000430118 RNF141Q8WVD5 230 aa5.48□□□□□ -1.53
HMGB3-203ENST00000430118 JDP2Q8WYK2 163 aa5.48□□□□□ -1.53
HMGB3-203ENST00000430118 DDX1Q92499 740 aaKnown RBP5.48□□□□□ -1.53
HMGB3-203ENST00000430118 OSBP2Q969R2 916 aa5.48□□□□□ -1.53
HMGB3-203ENST00000430118 VWCEQ96DN2 955 aa5.48□□□□□ -1.53
HMGB3-203ENST00000430118 CCDC136Q96JN2 1154 aa5.48□□□□□ -1.53
HMGB3-203ENST00000430118 IER2Q9BTL4 223 aa5.48□□□□□ -1.53
HMGB3-203ENST00000430118 CHMP4AQ9BY43 222 aa5.48□□□□□ -1.53
HMGB3-203ENST00000430118 MKRN2Q9H000 416 aaKnown RBP5.48□□□□□ -1.53
HMGB3-203ENST00000430118 APEX2Q9UBZ4 518 aa5.48□□□□□ -1.53
HMGB3-203ENST00000430118 FHOD1Q9Y613 1164 aa5.48□□□□□ -1.53
HMGB3-203ENST00000430118 CDC42BPAQ5VT25 1732 aa5.48□□□□□ -1.53
HMGB3-203ENST00000430118 ZC3H13Q5T200 1668 aaKnown RBP5.47□□□□□ -1.53
HMGB3-203ENST00000430118 ROBO1Q9Y6N7 1651 aa5.47□□□□□ -1.53
HMGB3-203ENST00000430118 SCAF11Q99590 1463 aaKnown RBP5.47□□□□□ -1.53
HMGB3-203ENST00000430118 CDK12Q9NYV4 1490 aaPredicted RBP5.47□□□□□ -1.53
HMGB3-203ENST00000430118 ASLP04424 464 aa5.47□□□□□ -1.53
HMGB3-203ENST00000430118 TP53P04637 393 aaPredicted RBP5.47□□□□□ -1.53
HMGB3-203ENST00000430118 APPP05067 770 aa5.47□□□□□ -1.53
HMGB3-203ENST00000430118 SCG5P05408 212 aa5.47□□□□□ -1.53
HMGB3-203ENST00000430118 ELNP15502 786 aa5.47□□□□□ -1.53
HMGB3-203ENST00000430118 NAT1P18440 290 aa5.47□□□□□ -1.53
HMGB3-203ENST00000430118 ASPAP45381 313 aa5.47□□□□□ -1.53
HMGB3-203ENST00000430118 EPHB1P54762 984 aa5.47□□□□□ -1.53
HMGB3-203ENST00000430118 KRT76Q01546 638 aa5.47□□□□□ -1.53
HMGB3-203ENST00000430118 DHCR24Q15392 516 aa5.47□□□□□ -1.53
HMGB3-203ENST00000430118 BRDTQ58F21 947 aaPredicted RBP5.47□□□□□ -1.53
HMGB3-203ENST00000430118 ACAD11Q709F0 780 aa5.47□□□□□ -1.53
HMGB3-203ENST00000430118 DDX46Q7L014 1031 aaKnown RBP5.47□□□□□ -1.53
HMGB3-203ENST00000430118 ADAT2Q7Z6V5 191 aaKnown RBP5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms