RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 CWC22Q9HCG8 908 aaKnown RBP6.24□□□□□ -1.41
USP40-204ENST00000427947 AP5S1Q9NUS5 200 aa6.24□□□□□ -1.41
USP40-204ENST00000427947 LMCD1Q9NZU5 365 aa6.24□□□□□ -1.41
USP40-204ENST00000427947 GSTM1P09488 218 aa6.23□□□□□ -1.41
USP40-204ENST00000427947 FUT4P22083 530 aa6.23□□□□□ -1.41
USP40-204ENST00000427947 NOP2P46087 812 aaKnown RBP6.23□□□□□ -1.41
USP40-204ENST00000427947 PPP2R2AP63151 447 aa6.23□□□□□ -1.41
USP40-204ENST00000427947 GTF2IRD2BQ6EKJ0 949 aa6.23□□□□□ -1.41
USP40-204ENST00000427947 GTF2IRD2Q86UP8 949 aa6.23□□□□□ -1.41
USP40-204ENST00000427947 SGSM3Q96HU1 749 aa6.23□□□□□ -1.41
USP40-204ENST00000427947 FCRL3Q96P31 734 aaPredicted RBP6.23□□□□□ -1.41
USP40-204ENST00000427947 ALPK1Q96QP1 1244 aa6.23□□□□□ -1.41
USP40-204ENST00000427947 MCMBPQ9BTE3 642 aa6.23□□□□□ -1.41
USP40-204ENST00000427947 SPATA9Q9BWV2 254 aa6.23□□□□□ -1.41
USP40-204ENST00000427947 SLC12A9Q9BXP2 914 aa6.23□□□□□ -1.41
USP40-204ENST00000427947 ZFP64Q9NPA5 681 aa6.23□□□□□ -1.41
USP40-204ENST00000427947 SLAMF8Q9P0V8 285 aa6.23□□□□□ -1.41
USP40-204ENST00000427947 TMEM82A0PJX8 343 aa6.22□□□□□ -1.41
USP40-204ENST00000427947 GRIA2P42262 883 aa6.22□□□□□ -1.41
USP40-204ENST00000427947 HSP90AA2PQ14568 343 aaPredicted RBP6.22□□□□□ -1.41
USP40-204ENST00000427947 RALGPS1Q5JS13 557 aa6.22□□□□□ -1.41
USP40-204ENST00000427947 RTP2Q5QGT7 225 aa6.22□□□□□ -1.41
USP40-204ENST00000427947 ZPBP2Q6X784 338 aa6.22□□□□□ -1.41
USP40-204ENST00000427947 PI4K2BQ8TCG2 481 aa6.22□□□□□ -1.41
USP40-204ENST00000427947 ARHGEF4Q9NR80 690 aa6.22□□□□□ -1.41
USP40-204ENST00000427947 BACE2Q9Y5Z0 518 aa6.22□□□□□ -1.41
USP40-204ENST00000427947 DNAJC25-GNG10A0A024R161 153 aa6.21□□□□□ -1.42
USP40-204ENST00000427947 ENDOUP21128 410 aaKnown RBP6.21□□□□□ -1.42
USP40-204ENST00000427947 SCRN1Q12765 414 aa6.21□□□□□ -1.42
USP40-204ENST00000427947 SLC23A3Q6PIS1 610 aa6.21□□□□□ -1.42
USP40-204ENST00000427947 NOP9Q86U38 636 aaKnown RBP6.21□□□□□ -1.42
USP40-204ENST00000427947 LILRB2Q8N423 598 aa6.21□□□□□ -1.42
USP40-204ENST00000427947 AARSD1Q9BTE6 412 aaKnown RBP6.21□□□□□ -1.42
USP40-204ENST00000427947 NKX2-4Q9H2Z4 354 aa6.21□□□□□ -1.42
USP40-204ENST00000427947 ADAMTS10Q9H324 1103 aa6.21□□□□□ -1.42
USP40-204ENST00000427947 TMEM59LQ9UK28 342 aa6.21□□□□□ -1.42
USP40-204ENST00000427947 ADAMTS6Q9UKP5 1117 aa6.21□□□□□ -1.42
USP40-204ENST00000427947 TRAV20A0A0B4J274 112 aa6.2□□□□□ -1.42
USP40-204ENST00000427947 C2orf71A6NGG8 1288 aa6.2□□□□□ -1.42
USP40-204ENST00000427947 AURKAO14965 403 aa6.2□□□□□ -1.42
USP40-204ENST00000427947 ADCY3O60266 1144 aa6.2□□□□□ -1.42
USP40-204ENST00000427947 SNRPB2P08579 225 aaKnown RBP6.2□□□□□ -1.42
USP40-204ENST00000427947 KCNJ6P48051 423 aa6.2□□□□□ -1.42
USP40-204ENST00000427947 SEPHS1P49903 392 aa6.2□□□□□ -1.42
USP40-204ENST00000427947 GP2P55259 537 aaKnown RBP6.2□□□□□ -1.42
USP40-204ENST00000427947 KSR1Q8IVT5 923 aa6.2□□□□□ -1.42
USP40-204ENST00000427947 ABI1Q8IZP0 508 aa6.2□□□□□ -1.42
USP40-204ENST00000427947 NAT16Q8N8M0 369 aa6.2□□□□□ -1.42
USP40-204ENST00000427947 FCRL2Q96LA5 508 aaPredicted RBP6.2□□□□□ -1.42
USP40-204ENST00000427947 IER2Q9BTL4 223 aa6.2□□□□□ -1.42
USP40-204ENST00000427947 CYP26B1Q9NR63 512 aa6.2□□□□□ -1.42
USP40-204ENST00000427947 FGF10O15520 208 aaPredicted RBP6.19□□□□□ -1.42
USP40-204ENST00000427947 RNASE1P07998 156 aaKnown RBP6.19□□□□□ -1.42
USP40-204ENST00000427947 ZGLP1P0C6A0 271 aa6.19□□□□□ -1.42
USP40-204ENST00000427947 FAM153BP0C7A2 387 aa6.19□□□□□ -1.42
USP40-204ENST00000427947 HOXC12P31275 282 aa6.19□□□□□ -1.42
USP40-204ENST00000427947 ECI1P42126 302 aa6.19□□□□□ -1.42
USP40-204ENST00000427947 HK2P52789 917 aa6.19□□□□□ -1.42
USP40-204ENST00000427947 DUSP4Q13115 394 aa6.19□□□□□ -1.42
USP40-204ENST00000427947 SF1Q15637 639 aaKnown RBP6.19□□□□□ -1.42
USP40-204ENST00000427947 PRSS53Q2L4Q9 553 aa6.19□□□□□ -1.42
USP40-204ENST00000427947 ZNF792Q3KQV3 632 aa6.19□□□□□ -1.42
USP40-204ENST00000427947 C2orf27AQ580R0 203 aa6.19□□□□□ -1.42
USP40-204ENST00000427947 YOD1Q5VVQ6 348 aaPredicted RBP6.19□□□□□ -1.42
USP40-204ENST00000427947 EEF1DP3Q658K8 133 aa6.19□□□□□ -1.42
USP40-204ENST00000427947 JAZF1Q86VZ6 243 aa6.19□□□□□ -1.42
USP40-204ENST00000427947 ZBTB38Q8NAP3 1195 aaPredicted RBP6.19□□□□□ -1.42
USP40-204ENST00000427947 SH3TC2Q8TF17 1288 aa6.19□□□□□ -1.42
USP40-204ENST00000427947 THAP3Q8WTV1 239 aaPredicted RBP6.19□□□□□ -1.42
USP40-204ENST00000427947 CDC6Q99741 560 aa6.19□□□□□ -1.42
USP40-204ENST00000427947 MBNL3Q9NUK0 354 aaKnown RBP6.19□□□□□ -1.42
USP40-204ENST00000427947 ERVK13-1Q9NX77 482 aa6.19□□□□□ -1.42
USP40-204ENST00000427947 ZNF281Q9Y2X9 895 aa6.19□□□□□ -1.42
USP40-204ENST00000427947 PRODHO43272 600 aa6.18□□□□□ -1.42
USP40-204ENST00000427947 THBDP07204 575 aa6.18□□□□□ -1.42
USP40-204ENST00000427947 GFRA1P56159 465 aa6.18□□□□□ -1.42
USP40-204ENST00000427947 RCSD1Q6JBY9 416 aa6.18□□□□□ -1.42
USP40-204ENST00000427947 GIMAP6Q6P9H5 292 aa6.18□□□□□ -1.42
USP40-204ENST00000427947 TMEM145Q8NBT3 493 aa6.18□□□□□ -1.42
USP40-204ENST00000427947 COPS5Q92905 334 aa6.18□□□□□ -1.42
USP40-204ENST00000427947 CCDC120Q96HB5 630 aa6.18□□□□□ -1.42
USP40-204ENST00000427947 MAP6Q96JE9 813 aa6.18□□□□□ -1.42
USP40-204ENST00000427947 G6PC3Q9BUM1 346 aa6.18□□□□□ -1.42
USP40-204ENST00000427947 RC3H2Q9HBD1 1191 aaKnown RBP6.18□□□□□ -1.42
USP40-204ENST00000427947 GPRC5CQ9NQ84 441 aa6.18□□□□□ -1.42
USP40-204ENST00000427947 PTCH2Q9Y6C5 1203 aa6.18□□□□□ -1.42
USP40-204ENST00000427947 MRPL42Q9Y6G3 142 aaKnown RBP6.18□□□□□ -1.42
USP40-204ENST00000427947 USP2O75604 605 aaPredicted RBP6.17□□□□□ -1.42
USP40-204ENST00000427947 CPP00450 1065 aa6.17□□□□□ -1.42
USP40-204ENST00000427947 CAPNS1P04632 268 aa6.17□□□□□ -1.42
USP40-204ENST00000427947 FGFR1P11362 822 aa6.17□□□□□ -1.42
USP40-204ENST00000427947 PABPC1P11940 636 aaKnown RBP6.17□□□□□ -1.42
USP40-204ENST00000427947 FOXB2Q5VYV0 432 aa6.17□□□□□ -1.42
USP40-204ENST00000427947 CYP2R1Q6VVX0 501 aa6.17□□□□□ -1.42
USP40-204ENST00000427947 NSMFQ6X4W1 530 aa6.17□□□□□ -1.42
USP40-204ENST00000427947 NBPF11Q86T75 865 aa6.17□□□□□ -1.42
USP40-204ENST00000427947 KCTD13Q8WZ19 329 aa6.17□□□□□ -1.42
USP40-204ENST00000427947 CCDC140Q96MF4 163 aa6.17□□□□□ -1.42
USP40-204ENST00000427947 PTCHD1Q96NR3 888 aa6.17□□□□□ -1.42
USP40-204ENST00000427947 IPO9Q96P70 1041 aaKnown RBP6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms