RNA–Protein interactions for RNA: ENST00000425836.6

VEGFA-209, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,575 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-209ENST00000425836 HPS5Q9UPZ3 1129 aa28.48■■■□□ 2.15
VEGFA-209ENST00000425836 TRIM17Q9Y577 477 aa28.48■■■□□ 2.15
VEGFA-209ENST00000425836 GOLGA8BA8MQT2 603 aa28.47■■■□□ 2.15
VEGFA-209ENST00000425836 CYTH3O43739 400 aa28.47■■■□□ 2.15
VEGFA-209ENST00000425836 DHX16O60231 1041 aaKnown RBP28.47■■■□□ 2.15
VEGFA-209ENST00000425836 GNAQP50148 359 aa28.47■■■□□ 2.15
VEGFA-209ENST00000425836 GPR142Q7Z601 462 aa28.47■■■□□ 2.15
VEGFA-209ENST00000425836 CTU1Q7Z7A3 348 aaKnown RBP28.47■■■□□ 2.15
VEGFA-209ENST00000425836 NCAPG2Q86XI2 1143 aa28.47■■■□□ 2.15
VEGFA-209ENST00000425836 LZTS2Q9BRK4 669 aa28.47■■■□□ 2.15
VEGFA-209ENST00000425836 MROH8Q9H579 483 aa28.47■■■□□ 2.15
VEGFA-209ENST00000425836 RIOX1Q9H6W3 641 aa28.47■■■□□ 2.15
VEGFA-209ENST00000425836 GOLGA8AA7E2F4 631 aa28.46■■■□□ 2.15
VEGFA-209ENST00000425836 PLEKHA8P1O95397 391 aa28.46■■■□□ 2.15
VEGFA-209ENST00000425836 GNRH1P01148 92 aa28.46■■■□□ 2.15
VEGFA-209ENST00000425836 ICAM1P05362 532 aa28.46■■■□□ 2.15
VEGFA-209ENST00000425836 PDIA3P30101 505 aaKnown RBP28.46■■■□□ 2.15
VEGFA-209ENST00000425836 SLC4A3P48751 1232 aa28.46■■■□□ 2.15
VEGFA-209ENST00000425836 AK2P54819 239 aa28.46■■■□□ 2.15
VEGFA-209ENST00000425836 RTN1Q16799 776 aa28.46■■■□□ 2.15
VEGFA-209ENST00000425836 WDR78Q5VTH9 848 aa28.46■■■□□ 2.15
VEGFA-209ENST00000425836 PLEKHH3Q7Z736 793 aa28.46■■■□□ 2.15
VEGFA-209ENST00000425836 SRBD1Q8N5C6 995 aaKnown RBP28.46■■■□□ 2.15
VEGFA-209ENST00000425836 MTMR8Q96EF0 704 aa28.46■■■□□ 2.15
VEGFA-209ENST00000425836 FAM217BQ9NTX9 383 aaPredicted RBP28.46■■■□□ 2.15
VEGFA-209ENST00000425836 CASP8AP2Q9UKL3 1982 aa28.46■■■□□ 2.15
VEGFA-209ENST00000425836 METAP2P50579 478 aaKnown RBP eCLIP28.45■■■□□ 2.157e-12■□□□□ 8.9
VEGFA-209ENST00000425836 CDC37Q16543 378 aaPredicted RBP28.45■■■□□ 2.15
VEGFA-209ENST00000425836 CMTR1Q8N1G2 835 aaKnown RBP28.45■■■□□ 2.15
VEGFA-209ENST00000425836 COA7Q96BR5 231 aa28.45■■■□□ 2.15
VEGFA-209ENST00000425836 RBM28Q9NW13 759 aaKnown RBP28.45■■■□□ 2.15
VEGFA-209ENST00000425836 SMARCA1P28370 1054 aa28.45■■■□□ 2.14
VEGFA-209ENST00000425836 COPB2P35606 906 aa28.45■■■□□ 2.14
VEGFA-209ENST00000425836 TMTC3Q6ZXV5 915 aa28.45■■■□□ 2.14
VEGFA-209ENST00000425836 SPZ1Q9BXG8 430 aa28.45■■■□□ 2.14
VEGFA-209ENST00000425836 CWC22Q9HCG8 908 aaKnown RBP28.45■■■□□ 2.14
VEGFA-209ENST00000425836 SRRDQ9UH36 339 aa28.45■■■□□ 2.14
VEGFA-209ENST00000425836 CCPG1Q9ULG6 757 aa28.45■■■□□ 2.14
VEGFA-209ENST00000425836 TAL1P17542 331 aaPredicted RBP28.44■■■□□ 2.14
VEGFA-209ENST00000425836 HOXD10P28358 340 aa28.44■■■□□ 2.14
VEGFA-209ENST00000425836 CDC27P30260 824 aa28.44■■■□□ 2.14
VEGFA-209ENST00000425836 ANKRD1Q15327 319 aa28.44■■■□□ 2.14
VEGFA-209ENST00000425836 QRICH1Q2TAL8 776 aa28.44■■■□□ 2.14
VEGFA-209ENST00000425836 ZNF274Q96GC6 653 aaPredicted RBP28.44■■■□□ 2.14
VEGFA-209ENST00000425836 GJD2Q9UKL4 321 aa28.44■■■□□ 2.14
VEGFA-209ENST00000425836 PPP2R5BQ15173 497 aa28.43■■■□□ 2.14
VEGFA-209ENST00000425836 GABRQQ9UN88 632 aa28.43■■■□□ 2.14
VEGFA-209ENST00000425836 NID2Q14112 1375 aa28.43■■■□□ 2.14
VEGFA-209ENST00000425836 PTPREP23469 700 aa28.42■■■□□ 2.14
VEGFA-209ENST00000425836 ADD1P35611 737 aaKnown RBP28.42■■■□□ 2.14
VEGFA-209ENST00000425836 PRKCZQ05513 592 aa28.42■■■□□ 2.14
VEGFA-209ENST00000425836 PIGSQ96S52 555 aa28.42■■■□□ 2.14
VEGFA-209ENST00000425836 TPCN1Q9ULQ1 816 aa28.42■■■□□ 2.14
VEGFA-209ENST00000425836 ZBTB5O15062 677 aa28.41■■■□□ 2.14
VEGFA-209ENST00000425836 ALAS1P13196 640 aa28.41■■■□□ 2.14
VEGFA-209ENST00000425836 RABEP1Q15276 862 aa28.41■■■□□ 2.14
VEGFA-209ENST00000425836 TKFCQ3LXA3 575 aa28.41■■■□□ 2.14
VEGFA-209ENST00000425836 MORN1Q5T089 497 aa28.41■■■□□ 2.14
VEGFA-209ENST00000425836 HOMER1Q86YM7 354 aa28.41■■■□□ 2.14
VEGFA-209ENST00000425836 CCDC82Q8N4S0 544 aa28.41■■■□□ 2.14
VEGFA-209ENST00000425836 CHST13Q8NET6 341 aa28.41■■■□□ 2.14
VEGFA-209ENST00000425836 TRERF1Q96PN7 1200 aa28.41■■■□□ 2.14
VEGFA-209ENST00000425836 HOMER2Q9NSB8 354 aa28.41■■■□□ 2.14
VEGFA-209ENST00000425836 PNMA2Q9UL42 364 aa28.41■■■□□ 2.14
VEGFA-209ENST00000425836 IVNS1ABPQ9Y6Y0 642 aa28.41■■■□□ 2.14
VEGFA-209ENST00000425836 ZSWIM8A7E2V4 1837 aa28.41■■■□□ 2.14
VEGFA-209ENST00000425836 CCDC196A0A1B0GTZ2 297 aa28.41■■■□□ 2.14
VEGFA-209ENST00000425836 STRNO43815 780 aa28.41■■■□□ 2.14
VEGFA-209ENST00000425836 PRMT2P55345 433 aa28.41■■■□□ 2.14
VEGFA-209ENST00000425836 RNF146Q9NTX7 359 aa28.41■■■□□ 2.14
VEGFA-209ENST00000425836 COL11A1P12107 1806 aaPredicted RBP28.4■■■□□ 2.14
VEGFA-209ENST00000425836 SLC15A5A6NIM6 579 aa28.4■■■□□ 2.14
VEGFA-209ENST00000425836 FLT3LGP49771 235 aa28.4■■■□□ 2.14
VEGFA-209ENST00000425836 CCT2P78371 535 aaKnown RBP28.4■■■□□ 2.14
VEGFA-209ENST00000425836 FUT2Q10981 343 aa28.4■■■□□ 2.14
VEGFA-209ENST00000425836 GRB14Q14449 540 aa28.4■■■□□ 2.14
VEGFA-209ENST00000425836 COL13A1Q5TAT6 717 aaPredicted RBP28.4■■■□□ 2.14
VEGFA-209ENST00000425836 PIBF1Q8WXW3 757 aa28.4■■■□□ 2.14
VEGFA-209ENST00000425836 PTPN22Q9Y2R2 807 aa28.4■■■□□ 2.14
VEGFA-209ENST00000425836 PPP1R11O60927 126 aaPredicted RBP28.39■■■□□ 2.14
VEGFA-209ENST00000425836 FCER1AP12319 257 aa28.39■■■□□ 2.14
VEGFA-209ENST00000425836 NOL8Q76FK4 1167 aaKnown RBP28.39■■■□□ 2.14
VEGFA-209ENST00000425836 FBXO11Q86XK2 927 aa28.39■■■□□ 2.14
VEGFA-209ENST00000425836 ABRAQ8N0Z2 381 aa28.39■■■□□ 2.14
VEGFA-209ENST00000425836 USP6NLQ92738 828 aa28.39■■■□□ 2.14
VEGFA-209ENST00000425836 NUDT12Q9BQG2 462 aa28.39■■■□□ 2.14
VEGFA-209ENST00000425836 NCOA5Q9HCD5 579 aaKnown RBP28.39■■■□□ 2.14
VEGFA-209ENST00000425836 FBXO40Q9UH90 709 aa28.39■■■□□ 2.14
VEGFA-209ENST00000425836 PNMA6FA0A0J9YX94 578 aa28.38■■■□□ 2.13
VEGFA-209ENST00000425836 STK3Q13188 491 aa28.38■■■□□ 2.13
VEGFA-209ENST00000425836 PKN2Q16513 984 aaKnown RBP28.38■■■□□ 2.13
VEGFA-209ENST00000425836 USH1GQ495M9 461 aa28.38■■■□□ 2.13
VEGFA-209ENST00000425836 MUM1L1Q5H9M0 696 aa28.38■■■□□ 2.13
VEGFA-209ENST00000425836 DHX30Q7L2E3 1194 aaKnown RBP eCLIP28.38■■■□□ 2.135e-6■□□□□ 9.9
VEGFA-209ENST00000425836 SOCS4Q8WXH5 440 aa28.38■■■□□ 2.13
VEGFA-209ENST00000425836 RRP36Q96EU6 259 aaKnown RBP28.38■■■□□ 2.13
VEGFA-209ENST00000425836 MMP19Q99542 508 aa28.38■■■□□ 2.13
VEGFA-209ENST00000425836 AMNQ9BXJ7 453 aa28.38■■■□□ 2.13
VEGFA-209ENST00000425836 ACAD9Q9H845 621 aa28.38■■■□□ 2.13
VEGFA-209ENST00000425836 ADORA2AP29274 412 aa28.37■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms