RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 POMZP3Q6PJE2 187 aa6.7□□□□□ -1.34
VPS54-204ENST00000416400 Q8N3U1 123 aa6.7□□□□□ -1.34
VPS54-204ENST00000416400 JMYQ8N9B5 988 aa6.7□□□□□ -1.34
VPS54-204ENST00000416400 ADCY4Q8NFM4 1077 aa6.7□□□□□ -1.34
VPS54-204ENST00000416400 KLHL25Q9H0H3 589 aa6.7□□□□□ -1.34
VPS54-204ENST00000416400 SLKQ9H2G2 1235 aaPredicted RBP6.7□□□□□ -1.34
VPS54-204ENST00000416400 TCFL5Q9UL49 500 aa6.7□□□□□ -1.34
VPS54-204ENST00000416400 PCDHA11Q9Y5I1 949 aa6.7□□□□□ -1.34
VPS54-204ENST00000416400 PTCH2Q9Y6C5 1203 aa6.7□□□□□ -1.34
VPS54-204ENST00000416400 RBAK-RBAKDNI3L0D1 243 aa6.69□□□□□ -1.34
VPS54-204ENST00000416400 CBFA2T2O43439 604 aa6.69□□□□□ -1.34
VPS54-204ENST00000416400 ESR1P03372 595 aa6.69□□□□□ -1.34
VPS54-204ENST00000416400 RPL10P27635 214 aaKnown RBP6.69□□□□□ -1.34
VPS54-204ENST00000416400 POU4F1Q01851 419 aa6.69□□□□□ -1.34
VPS54-204ENST00000416400 SQSTM1Q13501 440 aa6.69□□□□□ -1.34
VPS54-204ENST00000416400 RNF187Q5TA31 235 aaPredicted RBP6.69□□□□□ -1.34
VPS54-204ENST00000416400 LRRC47Q8N1G4 583 aaKnown RBP6.69□□□□□ -1.34
VPS54-204ENST00000416400 LINC00116Q8NCU8 138 aa6.69□□□□□ -1.34
VPS54-204ENST00000416400 ZDHHC15Q96MV8 337 aa6.69□□□□□ -1.34
VPS54-204ENST00000416400 SPATA9Q9BWV2 254 aa6.69□□□□□ -1.34
VPS54-204ENST00000416400 CWC22Q9HCG8 908 aaKnown RBP6.69□□□□□ -1.34
VPS54-204ENST00000416400 SLAMF8Q9P0V8 285 aa6.69□□□□□ -1.34
VPS54-204ENST00000416400 AKT3Q9Y243 479 aa6.69□□□□□ -1.34
VPS54-204ENST00000416400 SHOXO15266 292 aa6.68□□□□□ -1.34
VPS54-204ENST00000416400 ADAMTS4O75173 837 aa6.68□□□□□ -1.34
VPS54-204ENST00000416400 BMP8BP34820 402 aa6.68□□□□□ -1.34
VPS54-204ENST00000416400 DUSP4Q13115 394 aa6.68□□□□□ -1.34
VPS54-204ENST00000416400 TAF7LQ5H9L4 462 aa6.68□□□□□ -1.34
VPS54-204ENST00000416400 C16orf86Q6ZW13 317 aa6.68□□□□□ -1.34
VPS54-204ENST00000416400 ANKRD13AQ8IZ07 590 aa6.68□□□□□ -1.34
VPS54-204ENST00000416400 ZSWIM2Q8NEG5 633 aa6.68□□□□□ -1.34
VPS54-204ENST00000416400 ALPK1Q96QP1 1244 aa6.68□□□□□ -1.34
VPS54-204ENST00000416400 FOXP3Q9BZS1 431 aa6.68□□□□□ -1.34
VPS54-204ENST00000416400 MINPP1Q9UNW1 487 aa6.68□□□□□ -1.34
VPS54-204ENST00000416400 FKTNO75072 461 aa6.67□□□□□ -1.34
VPS54-204ENST00000416400 ZNF792Q3KQV3 632 aa6.67□□□□□ -1.34
VPS54-204ENST00000416400 CRTC3Q6UUV7 619 aa6.67□□□□□ -1.34
VPS54-204ENST00000416400 WAPLQ7Z5K2 1190 aa6.67□□□□□ -1.34
VPS54-204ENST00000416400 ABI1Q8IZP0 508 aa6.67□□□□□ -1.34
VPS54-204ENST00000416400 USHBP1Q8N6Y0 703 aa6.67□□□□□ -1.34
VPS54-204ENST00000416400 LRRN4CLQ8ND94 238 aa6.67□□□□□ -1.34
VPS54-204ENST00000416400 BVESQ8NE79 360 aa6.67□□□□□ -1.34
VPS54-204ENST00000416400 RCC1LQ96I51 464 aaKnown RBP6.67□□□□□ -1.34
VPS54-204ENST00000416400 CDADC1Q9BWV3 514 aa6.67□□□□□ -1.34
VPS54-204ENST00000416400 RC3H2Q9HBD1 1191 aaKnown RBP6.67□□□□□ -1.34
VPS54-204ENST00000416400 PRDM7Q9NQW5 492 aa6.67□□□□□ -1.34
VPS54-204ENST00000416400 H0Y8X5 98 aa6.66□□□□□ -1.34
VPS54-204ENST00000416400 RAC2P15153 192 aa6.66□□□□□ -1.34
VPS54-204ENST00000416400 VAV1P15498 845 aa6.66□□□□□ -1.34
VPS54-204ENST00000416400 AMPD2Q01433 879 aa6.66□□□□□ -1.34
VPS54-204ENST00000416400 TCEA2Q15560 299 aa6.66□□□□□ -1.34
VPS54-204ENST00000416400 LONRF2Q1L5Z9 754 aa6.66□□□□□ -1.34
VPS54-204ENST00000416400 KIAA0907Q7Z7F0 614 aaPredicted RBP6.66□□□□□ -1.34
VPS54-204ENST00000416400 NAT16Q8N8M0 369 aa6.66□□□□□ -1.34
VPS54-204ENST00000416400 SGSM3Q96HU1 749 aa6.66□□□□□ -1.34
VPS54-204ENST00000416400 FEZ1Q99689 392 aa6.66□□□□□ -1.34
VPS54-204ENST00000416400 CGGBP1Q9UFW8 167 aaPredicted RBP6.66□□□□□ -1.34
VPS54-204ENST00000416400 TMEM59LQ9UK28 342 aa6.66□□□□□ -1.34
VPS54-204ENST00000416400 PRKAB1Q9Y478 270 aa6.66□□□□□ -1.34
VPS54-204ENST00000416400 OAS3Q9Y6K5 1087 aaKnown RBP6.66□□□□□ -1.34
VPS54-204ENST00000416400 BIN1O00499 593 aa6.65□□□□□ -1.34
VPS54-204ENST00000416400 CD3EP07766 207 aa6.65□□□□□ -1.34
VPS54-204ENST00000416400 GSTM1P09488 218 aa6.65□□□□□ -1.34
VPS54-204ENST00000416400 FAM153BP0C7A2 387 aa6.65□□□□□ -1.34
VPS54-204ENST00000416400 GRB10Q13322 594 aa6.65□□□□□ -1.34
VPS54-204ENST00000416400 TMEM67Q5HYA8 995 aa6.65□□□□□ -1.34
VPS54-204ENST00000416400 ZC3H12BQ5HYM0 836 aaKnown RBP6.65□□□□□ -1.34
VPS54-204ENST00000416400 NFXL1Q6ZNB6 911 aa6.65□□□□□ -1.34
VPS54-204ENST00000416400 WFDC3Q8IUB2 231 aa6.65□□□□□ -1.34
VPS54-204ENST00000416400 SYNPOQ8N3V7 929 aa6.65□□□□□ -1.34
VPS54-204ENST00000416400 ARHGEF39Q8N4T4 335 aa6.65□□□□□ -1.34
VPS54-204ENST00000416400 OXR1Q8N573 874 aa6.65□□□□□ -1.34
VPS54-204ENST00000416400 ZBTB38Q8NAP3 1195 aaPredicted RBP6.65□□□□□ -1.34
VPS54-204ENST00000416400 SLC26A8Q96RN1 970 aa6.65□□□□□ -1.34
VPS54-204ENST00000416400 SUSD2Q9UGT4 822 aa6.65□□□□□ -1.34
VPS54-204ENST00000416400 PPP1R12AO14974 1030 aaPredicted RBP6.64□□□□□ -1.35
VPS54-204ENST00000416400 ADCY3O60266 1144 aa6.64□□□□□ -1.35
VPS54-204ENST00000416400 ZNF205O95201 554 aa6.64□□□□□ -1.35
VPS54-204ENST00000416400 KCNH1O95259 989 aa6.64□□□□□ -1.35
VPS54-204ENST00000416400 RNASE1P07998 156 aaKnown RBP6.64□□□□□ -1.35
VPS54-204ENST00000416400 CTSKP43235 329 aa6.64□□□□□ -1.35
VPS54-204ENST00000416400 IRAK1P51617 712 aa6.64□□□□□ -1.35
VPS54-204ENST00000416400 HK2P52789 917 aa6.64□□□□□ -1.35
VPS54-204ENST00000416400 TEKQ02763 1124 aa6.64□□□□□ -1.35
VPS54-204ENST00000416400 PTPROQ16827 1216 aa6.64□□□□□ -1.35
VPS54-204ENST00000416400 DPY19L1Q2PZI1 675 aa6.64□□□□□ -1.35
VPS54-204ENST00000416400 FILIP1Q7Z7B0 1213 aa6.64□□□□□ -1.35
VPS54-204ENST00000416400 SPPL2CQ8IUH8 684 aa6.64□□□□□ -1.35
VPS54-204ENST00000416400 ADAMTS10Q9H324 1103 aa6.64□□□□□ -1.35
VPS54-204ENST00000416400 TMX1Q9H3N1 280 aa6.64□□□□□ -1.35
VPS54-204ENST00000416400 MBNL3Q9NUK0 354 aaKnown RBP6.64□□□□□ -1.35
VPS54-204ENST00000416400 APEX2Q9UBZ4 518 aa6.64□□□□□ -1.35
VPS54-204ENST00000416400 EMC9Q9Y3B6 208 aa6.64□□□□□ -1.35
VPS54-204ENST00000416400 DNAJC25-GNG10A0A024R161 153 aa6.63□□□□□ -1.35
VPS54-204ENST00000416400 DNAJC6O75061 913 aa6.63□□□□□ -1.35
VPS54-204ENST00000416400 VAMP4O75379 141 aa6.63□□□□□ -1.35
VPS54-204ENST00000416400 ASMTLO95671 621 aa6.63□□□□□ -1.35
VPS54-204ENST00000416400 IBSPP21815 317 aaPredicted RBP6.63□□□□□ -1.35
VPS54-204ENST00000416400 GDNFP39905 211 aa6.63□□□□□ -1.35
VPS54-204ENST00000416400 AFMP43652 599 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms