RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 ACAD9Q9H845 621 aa17.05■□□□□ 0.32
LIMS1-206ENST00000414829 BIN2Q9UBW5 565 aaPredicted RBP17.05■□□□□ 0.32
LIMS1-206ENST00000414829 GJD2Q9UKL4 321 aa17.05■□□□□ 0.32
LIMS1-206ENST00000414829 GABRQQ9UN88 632 aa17.05■□□□□ 0.32
LIMS1-206ENST00000414829 GTF3C3Q9Y5Q9 886 aa17.05■□□□□ 0.32
LIMS1-206ENST00000414829 PFASO15067 1338 aa17.04■□□□□ 0.32
LIMS1-206ENST00000414829 PEX10O60683 326 aa17.04■□□□□ 0.32
LIMS1-206ENST00000414829 GOLGA8HP0CJ92 632 aa17.04■□□□□ 0.32
LIMS1-206ENST00000414829 CASTP20810 708 aaKnown RBP17.04■□□□□ 0.32
LIMS1-206ENST00000414829 ADORA2AP29274 412 aa17.04■□□□□ 0.32
LIMS1-206ENST00000414829 EXOSC10Q01780 885 aaKnown RBP17.04■□□□□ 0.32
LIMS1-206ENST00000414829 PPP2R5BQ15173 497 aa17.04■□□□□ 0.32
LIMS1-206ENST00000414829 ADCK5Q3MIX3 580 aa17.04■□□□□ 0.32
LIMS1-206ENST00000414829 TTBK2Q6IQ55 1244 aa17.04■□□□□ 0.32
LIMS1-206ENST00000414829 DPP9Q86TI2 863 aa17.04■□□□□ 0.32
LIMS1-206ENST00000414829 FBXL16Q8N461 479 aa17.04■□□□□ 0.32
LIMS1-206ENST00000414829 NUP133Q8WUM0 1156 aa17.04■□□□□ 0.32
LIMS1-206ENST00000414829 CHMP4CQ96CF2 233 aa17.04■□□□□ 0.32
LIMS1-206ENST00000414829 UPF2Q9HAU5 1272 aaKnown RBP17.04■□□□□ 0.32
LIMS1-206ENST00000414829 CYP46A1Q9Y6A2 500 aa17.04■□□□□ 0.32
LIMS1-206ENST00000414829 PALM3A6NDB9 673 aaPredicted RBP17.03■□□□□ 0.32
LIMS1-206ENST00000414829 CAPN2P17655 700 aa17.03■□□□□ 0.32
LIMS1-206ENST00000414829 RPS6KB1P23443 525 aa17.03■□□□□ 0.32
LIMS1-206ENST00000414829 SMARCA1P28370 1054 aa17.03■□□□□ 0.32
LIMS1-206ENST00000414829 CCDC174Q6PII3 467 aa17.03■□□□□ 0.32
LIMS1-206ENST00000414829 USP6NLQ92738 828 aa17.03■□□□□ 0.32
LIMS1-206ENST00000414829 DDX11Q96FC9 970 aa17.03■□□□□ 0.32
LIMS1-206ENST00000414829 ZNF333Q96JL9 665 aa17.03■□□□□ 0.32
LIMS1-206ENST00000414829 RNF146Q9NTX7 359 aa17.03■□□□□ 0.32
LIMS1-206ENST00000414829 RBM28Q9NW13 759 aaKnown RBP17.03■□□□□ 0.32
LIMS1-206ENST00000414829 MAD2L2Q9UI95 211 aa17.03■□□□□ 0.32
LIMS1-206ENST00000414829 DIS3Q9Y2L1 958 aaKnown RBP17.03■□□□□ 0.32
LIMS1-206ENST00000414829 RLFQ13129 1914 aa17.02■□□□□ 0.32
LIMS1-206ENST00000414829 CCDC196A0A1B0GTZ2 297 aa17.02■□□□□ 0.32
LIMS1-206ENST00000414829 CYP2B6P20813 491 aa17.02■□□□□ 0.32
LIMS1-206ENST00000414829 CDC37Q16543 378 aaPredicted RBP17.02■□□□□ 0.32
LIMS1-206ENST00000414829 MFSD14CQ5VZR4 134 aa17.02■□□□□ 0.32
LIMS1-206ENST00000414829 OLFML2BQ68BL8 750 aa17.02■□□□□ 0.32
LIMS1-206ENST00000414829 APOA5Q6Q788 366 aa17.02■□□□□ 0.32
LIMS1-206ENST00000414829 RUFY3Q7L099 469 aa17.02■□□□□ 0.32
LIMS1-206ENST00000414829 ADGRF4Q8IZF3 695 aa17.02■□□□□ 0.32
LIMS1-206ENST00000414829 ANKRD35Q8N283 1001 aa17.02■□□□□ 0.32
LIMS1-206ENST00000414829 ZNF236Q9UL36 1845 aa17.02■□□□□ 0.31
LIMS1-206ENST00000414829 ZNF536O15090 1300 aa17.01■□□□□ 0.31
LIMS1-206ENST00000414829 ZBTB43O43298 467 aa17.01■□□□□ 0.31
LIMS1-206ENST00000414829 ALAS1P13196 640 aa17.01■□□□□ 0.31
LIMS1-206ENST00000414829 SLC4A3P48751 1232 aa17.01■□□□□ 0.31
LIMS1-206ENST00000414829 MICU3Q86XE3 530 aa17.01■□□□□ 0.31
LIMS1-206ENST00000414829 MSL3Q8N5Y2 521 aaKnown RBP17.01■□□□□ 0.31
LIMS1-206ENST00000414829 TRERF1Q96PN7 1200 aa17.01■□□□□ 0.31
LIMS1-206ENST00000414829 TMEM106CQ9BVX2 250 aa17.01■□□□□ 0.31
LIMS1-206ENST00000414829 SPZ1Q9BXG8 430 aa17.01■□□□□ 0.31
LIMS1-206ENST00000414829 UBA5Q9GZZ9 404 aa17.01■□□□□ 0.31
LIMS1-206ENST00000414829 ZSWIM6Q9HCJ5 1215 aa17.01■□□□□ 0.31
LIMS1-206ENST00000414829 HOMER2Q9NSB8 354 aa17.01■□□□□ 0.31
LIMS1-206ENST00000414829 SEC63Q9UGP8 760 aaKnown RBP17.01■□□□□ 0.31
LIMS1-206ENST00000414829 PARP14Q460N5 1801 aa17■□□□□ 0.31
LIMS1-206ENST00000414829 ABCB11O95342 1321 aa17■□□□□ 0.31
LIMS1-206ENST00000414829 ZBTB5O15062 677 aa17■□□□□ 0.31
LIMS1-206ENST00000414829 INHAP05111 366 aa17■□□□□ 0.31
LIMS1-206ENST00000414829 C8orf34Q49A92 452 aa17■□□□□ 0.31
LIMS1-206ENST00000414829 SH3TC2Q8TF17 1288 aa17■□□□□ 0.31
LIMS1-206ENST00000414829 AGBL1Q96MI9 1066 aa17■□□□□ 0.31
LIMS1-206ENST00000414829 AMNQ9BXJ7 453 aa17■□□□□ 0.31
LIMS1-206ENST00000414829 LRRC2Q9BYS8 371 aa17■□□□□ 0.31
LIMS1-206ENST00000414829 SENP2Q9HC62 589 aa17■□□□□ 0.31
LIMS1-206ENST00000414829 KLF18A0A0U1RQI7 1052 aa16.99■□□□□ 0.31
LIMS1-206ENST00000414829 CCDC85CA6NKD9 419 aa16.99■□□□□ 0.31
LIMS1-206ENST00000414829 ELNP15502 786 aa16.99■□□□□ 0.31
LIMS1-206ENST00000414829 ANKRD1Q15327 319 aa16.99■□□□□ 0.31
LIMS1-206ENST00000414829 RTN1Q16799 776 aa16.99■□□□□ 0.31
LIMS1-206ENST00000414829 ZNF467Q7Z7K2 595 aaPredicted RBP16.99■□□□□ 0.31
LIMS1-206ENST00000414829 FBXO11Q86XK2 927 aa16.99■□□□□ 0.31
LIMS1-206ENST00000414829 MCF2L2Q86YR7 1114 aa16.99■□□□□ 0.31
LIMS1-206ENST00000414829 STAG2Q8N3U4 1231 aa16.99■□□□□ 0.31
LIMS1-206ENST00000414829 FANCBQ8NB91 859 aa16.99■□□□□ 0.31
LIMS1-206ENST00000414829 RRP36Q96EU6 259 aaKnown RBP16.99■□□□□ 0.31
LIMS1-206ENST00000414829 IL17RAQ96F46 866 aa16.99■□□□□ 0.31
LIMS1-206ENST00000414829 MPHOSPH6Q99547 160 aaKnown RBP16.99■□□□□ 0.31
LIMS1-206ENST00000414829 AGXT2Q9BYV1 514 aa16.99■□□□□ 0.31
LIMS1-206ENST00000414829 RIOX1Q9H6W3 641 aa16.99■□□□□ 0.31
LIMS1-206ENST00000414829 JMJD4Q9H9V9 463 aa16.99■□□□□ 0.31
LIMS1-206ENST00000414829 GPHNQ9NQX3 736 aaPredicted RBP16.99■□□□□ 0.31
LIMS1-206ENST00000414829 NRBP1Q9UHY1 535 aa16.99■□□□□ 0.31
LIMS1-206ENST00000414829 MRPL11Q9Y3B7 192 aaKnown RBP16.99■□□□□ 0.31
LIMS1-206ENST00000414829 RIPK3Q9Y572 518 aa16.99■□□□□ 0.31
LIMS1-206ENST00000414829 HTTP42858 3142 aa16.99■□□□□ 0.31
LIMS1-206ENST00000414829 LOC102724159A0A0B4J2E5 919 aa16.98■□□□□ 0.31
LIMS1-206ENST00000414829 GOLGA8AA7E2F4 631 aa16.98■□□□□ 0.31
LIMS1-206ENST00000414829 GOLGA8BA8MQT2 603 aa16.98■□□□□ 0.31
LIMS1-206ENST00000414829 POTEB2H3BUK9 544 aa16.98■□□□□ 0.31
LIMS1-206ENST00000414829 PWP2Q15269 919 aaKnown RBP16.98■□□□□ 0.31
LIMS1-206ENST00000414829 QRICH1Q2TAL8 776 aa16.98■□□□□ 0.31
LIMS1-206ENST00000414829 Q6ZUG5 572 aa16.98■□□□□ 0.31
LIMS1-206ENST00000414829 SAMD3Q8N6K7 520 aa16.98■□□□□ 0.31
LIMS1-206ENST00000414829 IL27Q8NEV9 243 aa16.98■□□□□ 0.31
LIMS1-206ENST00000414829 TRIB2Q92519 343 aa16.98■□□□□ 0.31
LIMS1-206ENST00000414829 BRF1Q92994 677 aa16.98■□□□□ 0.31
LIMS1-206ENST00000414829 MTMR8Q96EF0 704 aa16.98■□□□□ 0.31
LIMS1-206ENST00000414829 TCEANC2Q96MN5 208 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms