RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 PLEKHA4Q9H4M7 779 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 MCM9Q9NXL9 1143 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 PTPDC1A2A3K4 754 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 GOLGA8RI6L899 631 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 CALCRLQ16602 461 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 WDR47O94967 919 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 SDSP20132 328 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 ZNF174Q15697 407 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 CEP55Q53EZ4 464 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 TTBK2Q6IQ55 1244 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 INTS4Q96HW7 963 aaKnown RBP14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 SGK1O00141 431 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 RAB14P61106 215 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 NBPF20Q3BBV1 942 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 RRAGAQ7L523 313 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 CCDC51Q96ER9 411 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 AZI2Q9H6S1 392 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 ACTR5Q9H9F9 607 aaPredicted RBP14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 MRPL40Q9NQ50 206 aaKnown RBP14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 ARHGAP26Q9UNA1 814 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 KIF1CO43896 1103 aaKnown RBP14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 DEPDC1Q5TB30 811 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 GINS2Q9Y248 185 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 PTPN22Q9Y2R2 807 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 CPP00450 1065 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 ZNF711Q9Y462 761 aa14.51□□□□□ -0.09
CCDC88A-204ENST00000413716 KRT7P08729 469 aa14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 STAT1P42224 750 aa14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 OCRLQ01968 901 aa14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 MAGEB6Q8N7X4 407 aa14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 DTNBP1Q96EV8 351 aa14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 SLF1Q9BQI6 1058 aa14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 DNM3Q9UQ16 869 aa14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 N4BP1O75113 896 aaKnown RBP14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 NCF2P19878 526 aaPredicted RBP14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 POSTNQ15063 836 aa14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 ACRBPQ8NEB7 543 aa14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 SLC38A10Q9HBR0 1119 aa14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 C11orf95C9JLR9 678 aaPredicted RBP14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 TADA3O75528 432 aa14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 TTLL11Q8NHH1 800 aa14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 TRIM45Q9H8W5 580 aaPredicted RBP14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 MTX1Q13505 466 aa14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 CAPRIN1Q14444 709 aaKnown RBP14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 SLC9C2Q5TAH2 1124 aa14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 KLC2Q9H0B6 622 aa14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 SLFN14P0C7P3 912 aa14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 PDE11AQ9HCR9 933 aa14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 ZNF212Q9UDV6 495 aa14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 MAPK8IP1Q9UQF2 711 aa14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 PYGMP11217 842 aa14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 BFSP1Q12934 665 aa14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 SZRD1Q7Z422 152 aa14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 CCHCR1Q8TD31 782 aa14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 LSM14BQ9BX40 385 aaKnown RBP14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 PRG3Q9Y2Y8 225 aaPredicted RBP14.5□□□□□ -0.09
CCDC88A-204ENST00000413716 KIF19Q2TAC6 998 aa14.49□□□□□ -0.09
CCDC88A-204ENST00000413716 TAGAPQ8N103 731 aa14.49□□□□□ -0.09
CCDC88A-204ENST00000413716 ARHGEF10LQ9HCE6 1279 aa14.49□□□□□ -0.09
CCDC88A-204ENST00000413716 CLEC11AQ9Y240 323 aa14.49□□□□□ -0.09
CCDC88A-204ENST00000413716 EPRSP07814 1512 aaKnown RBP14.49□□□□□ -0.09
CCDC88A-204ENST00000413716 YWHAHQ04917 246 aaPredicted RBP14.49□□□□□ -0.09
CCDC88A-204ENST00000413716 RTEL1Q9NZ71 1219 aa14.49□□□□□ -0.09
CCDC88A-204ENST00000413716 POC1B-GALNT4F8VUJ3 575 aa14.49□□□□□ -0.09
CCDC88A-204ENST00000413716 TMCC1O94876 653 aa14.49□□□□□ -0.09
CCDC88A-204ENST00000413716 RWDD2BP57060 319 aa14.49□□□□□ -0.09
CCDC88A-204ENST00000413716 GUCY2CP25092 1073 aa14.49□□□□□ -0.09
CCDC88A-204ENST00000413716 SCYL2Q6P3W7 929 aa14.49□□□□□ -0.09
CCDC88A-204ENST00000413716 OTUB1Q96FW1 271 aaPredicted RBP14.49□□□□□ -0.09
CCDC88A-204ENST00000413716 KIF9Q9HAQ2 790 aa14.49□□□□□ -0.09
CCDC88A-204ENST00000413716 LZTS3O60299 673 aaPredicted RBP14.49□□□□□ -0.09
CCDC88A-204ENST00000413716 APOBRQ0VD83 1088 aa14.49□□□□□ -0.09
CCDC88A-204ENST00000413716 MED21Q13503 144 aa14.49□□□□□ -0.09
CCDC88A-204ENST00000413716 NOP53Q9NZM5 478 aaKnown RBP14.49□□□□□ -0.09
CCDC88A-204ENST00000413716 ABL1P00519 1130 aa14.49□□□□□ -0.09
CCDC88A-204ENST00000413716 ABCB4P21439 1286 aa14.49□□□□□ -0.09
CCDC88A-204ENST00000413716 NLRP12P59046 1061 aa14.49□□□□□ -0.09
CCDC88A-204ENST00000413716 SPATA17Q96L03 361 aa14.49□□□□□ -0.09
CCDC88A-204ENST00000413716 POLKQ9UBT6 870 aa14.49□□□□□ -0.09
CCDC88A-204ENST00000413716 KAZNQ674X7 775 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 ZBTB18Q99592 522 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 TBC1D7Q9P0N9 293 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 DCTN3O75935 186 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 FSCBQ5H9T9 825 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 ADCK1Q86TW2 530 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 NOSTRINQ8IVI9 506 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 ICA1LQ8NDH6 482 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 U2AF1L4Q8WU68 220 aaKnown RBP14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 L3MBTL1Q9Y468 752 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 H0Y626 953 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 TRIM16O95361 564 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 STAT2P52630 851 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 EHBP1L1Q8N3D4 1523 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 KDM3AQ9Y4C1 1321 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 TOM1L1O75674 476 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 HSPA1AP0DMV8 641 aaKnown RBP14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 HSPA1BP0DMV9 641 aaKnown RBP14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 TRPV6Q9H1D0 765 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 MAPK13O15264 365 aa14.48□□□□□ -0.09
CCDC88A-204ENST00000413716 PRDM1O75626 825 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms