RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 CC2D2BQ6DHV5 1058 aa22.79■■□□□ 1.24
USP39-204ENST00000409766 NEK8Q86SG6 692 aa22.79■■□□□ 1.24
USP39-204ENST00000409766 REXO1Q8N1G1 1221 aaKnown RBP22.79■■□□□ 1.24
USP39-204ENST00000409766 DISC1Q9NRI5 854 aa22.79■■□□□ 1.24
USP39-204ENST00000409766 PI4KBQ9UBF8 816 aa22.79■■□□□ 1.24
USP39-204ENST00000409766 KARSQ15046 597 aaKnown RBP22.79■■□□□ 1.24
USP39-204ENST00000409766 LETM2Q2VYF4 491 aa22.79■■□□□ 1.24
USP39-204ENST00000409766 PPP4R3BQ5MIZ7 849 aa22.79■■□□□ 1.24
USP39-204ENST00000409766 SH3BP5LQ7L8J4 393 aa22.79■■□□□ 1.24
USP39-204ENST00000409766 DEFB132Q7Z7B7 95 aa22.79■■□□□ 1.24
USP39-204ENST00000409766 VSTM4Q8IW00 320 aa22.79■■□□□ 1.24
USP39-204ENST00000409766 JMJD4Q9H9V9 463 aa22.79■■□□□ 1.24
USP39-204ENST00000409766 INTS13Q9NVM9 706 aa22.79■■□□□ 1.24
USP39-204ENST00000409766 UQCRHLA0A096LP55 91 aa22.78■■□□□ 1.24
USP39-204ENST00000409766 CCNT1O60563 726 aaKnown RBP22.78■■□□□ 1.24
USP39-204ENST00000409766 UQCRHP07919 91 aa22.78■■□□□ 1.24
USP39-204ENST00000409766 BAG6P46379 1132 aa22.78■■□□□ 1.24
USP39-204ENST00000409766 GPATCH4Q5T3I0 446 aaKnown RBP22.78■■□□□ 1.24
USP39-204ENST00000409766 ADGRF4Q8IZF3 695 aa22.78■■□□□ 1.24
USP39-204ENST00000409766 COA7Q96BR5 231 aa22.78■■□□□ 1.24
USP39-204ENST00000409766 CCSER1Q9C0I3 900 aa22.78■■□□□ 1.24
USP39-204ENST00000409766 BLZF1Q9H2G9 400 aa22.78■■□□□ 1.24
USP39-204ENST00000409766 BIN2Q9UBW5 565 aaPredicted RBP22.78■■□□□ 1.24
USP39-204ENST00000409766 PP2D1A8MPX8 630 aa22.77■■□□□ 1.24
USP39-204ENST00000409766 PPP1R3GB7ZBB8 358 aa22.77■■□□□ 1.24
USP39-204ENST00000409766 SFPQP23246 707 aaKnown RBP eCLIP22.77■■□□□ 1.24
USP39-204ENST00000409766 STAT6P42226 847 aa22.77■■□□□ 1.24
USP39-204ENST00000409766 SF3B2Q13435 895 aaKnown RBP22.77■■□□□ 1.24
USP39-204ENST00000409766 HSP90AA4PQ58FG1 418 aa22.77■■□□□ 1.24
USP39-204ENST00000409766 TBCKQ8TEA7 893 aa22.77■■□□□ 1.24
USP39-204ENST00000409766 SAMSN1Q9NSI8 373 aaKnown RBP22.77■■□□□ 1.24
USP39-204ENST00000409766 PNMA6FA0A0J9YX94 578 aa22.77■■□□□ 1.24
USP39-204ENST00000409766 TMEM232C9JQI7 657 aa22.77■■□□□ 1.24
USP39-204ENST00000409766 OR52Z1P0C646 297 aa22.77■■□□□ 1.24
USP39-204ENST00000409766 NAALADL2Q58DX5 795 aa22.77■■□□□ 1.24
USP39-204ENST00000409766 JAKMIP3Q5VZ66 844 aa22.77■■□□□ 1.24
USP39-204ENST00000409766 TTBK2Q6IQ55 1244 aa22.77■■□□□ 1.24
USP39-204ENST00000409766 SUPT20HQ8NEM7 779 aa22.77■■□□□ 1.24
USP39-204ENST00000409766 FAM196BA6NMK8 535 aa22.76■■□□□ 1.23
USP39-204ENST00000409766 CDK11BP21127 795 aaKnown RBP22.76■■□□□ 1.23
USP39-204ENST00000409766 ORC2Q13416 577 aaPredicted RBP22.76■■□□□ 1.23
USP39-204ENST00000409766 SPATA1Q5VX52 437 aa22.76■■□□□ 1.23
USP39-204ENST00000409766 SMYD4Q8IYR2 804 aaPredicted RBP22.76■■□□□ 1.23
USP39-204ENST00000409766 KCND1Q9NSA2 647 aa22.76■■□□□ 1.23
USP39-204ENST00000409766 TMEM260Q9NX78 707 aa22.76■■□□□ 1.23
USP39-204ENST00000409766 UBA7P41226 1012 aa22.75■■□□□ 1.23
USP39-204ENST00000409766 ADCY7P51828 1080 aa22.75■■□□□ 1.23
USP39-204ENST00000409766 ATP2B2Q01814 1243 aa22.75■■□□□ 1.23
USP39-204ENST00000409766 CERKLQ49MI3 558 aaPredicted RBP22.75■■□□□ 1.23
USP39-204ENST00000409766 TATDN1Q6P1N9 297 aa22.75■■□□□ 1.23
USP39-204ENST00000409766 MYRIPQ8NFW9 859 aa22.75■■□□□ 1.23
USP39-204ENST00000409766 MKL1Q969V6 931 aa22.75■■□□□ 1.23
USP39-204ENST00000409766 AK8Q96MA6 479 aa22.75■■□□□ 1.23
USP39-204ENST00000409766 SYNRGQ9UMZ2 1314 aa22.75■■□□□ 1.23
USP39-204ENST00000409766 YDJCA8MPS7 323 aa22.75■■□□□ 1.23
USP39-204ENST00000409766 C21orf2O43822 256 aa22.75■■□□□ 1.23
USP39-204ENST00000409766 PPP1R11O60927 126 aaPredicted RBP22.75■■□□□ 1.23
USP39-204ENST00000409766 RRAGBQ5VZM2 374 aa22.75■■□□□ 1.23
USP39-204ENST00000409766 KLHL10Q6JEL2 608 aa22.75■■□□□ 1.23
USP39-204ENST00000409766 PPP1R18Q6NYC8 613 aa22.75■■□□□ 1.23
USP39-204ENST00000409766 ZSCAN29Q8IWY8 852 aaPredicted RBP22.75■■□□□ 1.23
USP39-204ENST00000409766 MTMR8Q96EF0 704 aa22.75■■□□□ 1.23
USP39-204ENST00000409766 C16orf45Q96MC5 204 aaPredicted RBP22.75■■□□□ 1.23
USP39-204ENST00000409766 PDGFDQ9GZP0 370 aaPredicted RBP22.75■■□□□ 1.23
USP39-204ENST00000409766 PSME4Q14997 1843 aa22.75■■□□□ 1.23
USP39-204ENST00000409766 TPD52L1Q16890 204 aaPredicted RBP22.74■■□□□ 1.23
USP39-204ENST00000409766 NYAP2Q9P242 653 aa22.74■■□□□ 1.23
USP39-204ENST00000409766 USP27XA6NNY8 438 aa22.74■■□□□ 1.23
USP39-204ENST00000409766 PPIP5K2O43314 1243 aa22.74■■□□□ 1.23
USP39-204ENST00000409766 SLC16A2P36021 539 aa22.74■■□□□ 1.23
USP39-204ENST00000409766 CCDC96Q2M329 555 aa22.74■■□□□ 1.23
USP39-204ENST00000409766 SHROOM1Q2M3G4 852 aaPredicted RBP22.74■■□□□ 1.23
USP39-204ENST00000409766 KCTD1Q719H9 257 aa22.74■■□□□ 1.23
USP39-204ENST00000409766 TDRD3Q9H7E2 651 aaKnown RBP22.74■■□□□ 1.23
USP39-204ENST00000409766 KANSL2Q9H9L4 492 aa22.74■■□□□ 1.23
USP39-204ENST00000409766 RPN1P04843 607 aaKnown RBP22.73■■□□□ 1.23
USP39-204ENST00000409766 EEF2P13639 858 aaKnown RBP22.73■■□□□ 1.23
USP39-204ENST00000409766 RIC8AQ9NPQ8 531 aa22.73■■□□□ 1.23
USP39-204ENST00000409766 RMND1Q9NWS8 449 aa22.73■■□□□ 1.23
USP39-204ENST00000409766 ZBTB5O15062 677 aa22.72■■□□□ 1.23
USP39-204ENST00000409766 STX17P56962 302 aa22.72■■□□□ 1.23
USP39-204ENST00000409766 ZNF658Q5TYW1 1059 aaPredicted RBP22.72■■□□□ 1.23
USP39-204ENST00000409766 CDKAL1Q5VV42 579 aa22.72■■□□□ 1.23
USP39-204ENST00000409766 CCAR2Q8N163 923 aaKnown RBP22.72■■□□□ 1.23
USP39-204ENST00000409766 KBTBD4Q9NVX7 518 aa22.72■■□□□ 1.23
USP39-204ENST00000409766 ATRNL1Q5VV63 1379 aa22.72■■□□□ 1.23
USP39-204ENST00000409766 USP17L10C9JJH3 530 aa22.72■■□□□ 1.23
USP39-204ENST00000409766 EDIL3O43854 480 aa22.72■■□□□ 1.23
USP39-204ENST00000409766 KCNJ6P48051 423 aa22.72■■□□□ 1.23
USP39-204ENST00000409766 APTXQ7Z2E3 356 aaKnown RBP22.72■■□□□ 1.23
USP39-204ENST00000409766 SIAH1Q8IUQ4 282 aa22.72■■□□□ 1.23
USP39-204ENST00000409766 RASSF8Q8NHQ8 419 aa22.72■■□□□ 1.23
USP39-204ENST00000409766 PRMT6Q96LA8 375 aaPredicted RBP22.72■■□□□ 1.23
USP39-204ENST00000409766 ENTPD3O75355 529 aa22.71■■□□□ 1.23
USP39-204ENST00000409766 MYL1P05976 194 aa22.71■■□□□ 1.23
USP39-204ENST00000409766 TNNT1P13805 278 aa22.71■■□□□ 1.23
USP39-204ENST00000409766 TBX2Q13207 712 aaPredicted RBP22.71■■□□□ 1.23
USP39-204ENST00000409766 NR1I3Q14994 352 aa22.71■■□□□ 1.23
USP39-204ENST00000409766 PTPN21Q16825 1174 aa22.71■■□□□ 1.23
USP39-204ENST00000409766 LRRC15Q8TF66 581 aa22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms