RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 GTF3C6Q969F1 213 aa18.52■□□□□ 0.55
HMGA1-204ENST00000401473 SPZ1Q9BXG8 430 aa18.52■□□□□ 0.55
HMGA1-204ENST00000401473 RABGAP1Q9Y3P9 1069 aa18.52■□□□□ 0.55
HMGA1-204ENST00000401473 GPR25O00155 361 aa18.51■□□□□ 0.55
HMGA1-204ENST00000401473 GCLCP48506 637 aaPredicted RBP18.51■□□□□ 0.55
HMGA1-204ENST00000401473 CAP1Q01518 475 aa18.51■□□□□ 0.55
HMGA1-204ENST00000401473 CPXCR1Q8N123 301 aa18.51■□□□□ 0.55
HMGA1-204ENST00000401473 PHKBQ93100 1093 aa18.51■□□□□ 0.55
HMGA1-204ENST00000401473 ZSCAN31Q96LW9 406 aaPredicted RBP18.51■□□□□ 0.55
HMGA1-204ENST00000401473 PIGSQ96S52 555 aa18.51■□□□□ 0.55
HMGA1-204ENST00000401473 LZTS2Q9BRK4 669 aa18.51■□□□□ 0.55
HMGA1-204ENST00000401473 RAVER2Q9HCJ3 691 aaKnown RBP18.51■□□□□ 0.55
HMGA1-204ENST00000401473 DHX16O60231 1041 aaKnown RBP18.5■□□□□ 0.55
HMGA1-204ENST00000401473 TAL1P17542 331 aaPredicted RBP18.5■□□□□ 0.55
HMGA1-204ENST00000401473 MCM2P49736 904 aa18.5■□□□□ 0.55
HMGA1-204ENST00000401473 HOMER1Q86YM7 354 aa18.5■□□□□ 0.55
HMGA1-204ENST00000401473 MB21D1Q8N884 522 aa18.5■□□□□ 0.55
HMGA1-204ENST00000401473 AGBL1Q96MI9 1066 aa18.5■□□□□ 0.55
HMGA1-204ENST00000401473 RIPK3Q9Y572 518 aa18.5■□□□□ 0.55
HMGA1-204ENST00000401473 V9GY48 417 aaPredicted RBP18.5■□□□□ 0.55
HMGA1-204ENST00000401473 CNTNAP5Q8WYK1 1306 aa18.5■□□□□ 0.55
HMGA1-204ENST00000401473 BRCA2P51587 3418 aa18.5■□□□□ 0.55
HMGA1-204ENST00000401473 A0A0G2JMZ2 1700 aa18.5■□□□□ 0.55
HMGA1-204ENST00000401473 PPP1R11O60927 126 aaPredicted RBP18.5■□□□□ 0.55
HMGA1-204ENST00000401473 ZBED4O75132 1171 aa18.5■□□□□ 0.55
HMGA1-204ENST00000401473 IFNAR1P17181 557 aa18.5■□□□□ 0.55
HMGA1-204ENST00000401473 LBX1P52954 281 aa18.5■□□□□ 0.55
HMGA1-204ENST00000401473 ERVK-9P63128 1117 aa18.5■□□□□ 0.55
HMGA1-204ENST00000401473 ERVK-24P63145 666 aa18.5■□□□□ 0.55
HMGA1-204ENST00000401473 CDC37Q16543 378 aaPredicted RBP18.5■□□□□ 0.55
HMGA1-204ENST00000401473 QRICH1Q2TAL8 776 aa18.5■□□□□ 0.55
HMGA1-204ENST00000401473 CCDC174Q6PII3 467 aa18.5■□□□□ 0.55
HMGA1-204ENST00000401473 SNX21Q969T3 373 aa18.5■□□□□ 0.55
HMGA1-204ENST00000401473 MORF4L1Q9UBU8 362 aa18.5■□□□□ 0.55
HMGA1-204ENST00000401473 ATP2A1O14983 1001 aa18.49■□□□□ 0.55
HMGA1-204ENST00000401473 FDX1P10109 184 aa18.49■□□□□ 0.55
HMGA1-204ENST00000401473 FAM110CQ1W6H9 321 aa18.49■□□□□ 0.55
HMGA1-204ENST00000401473 CCDC83Q8IWF9 413 aa18.49■□□□□ 0.55
HMGA1-204ENST00000401473 GPRC5AQ8NFJ5 357 aa18.49■□□□□ 0.55
HMGA1-204ENST00000401473 ZNF296Q8WUU4 475 aaPredicted RBP18.49■□□□□ 0.55
HMGA1-204ENST00000401473 SPATC1LQ9H0A9 340 aa18.49■□□□□ 0.55
HMGA1-204ENST00000401473 SH2B1Q9NRF2 756 aaPredicted RBP18.49■□□□□ 0.55
HMGA1-204ENST00000401473 ZBTB5O15062 677 aa18.48■□□□□ 0.55
HMGA1-204ENST00000401473 STAT3P40763 770 aa18.48■□□□□ 0.55
HMGA1-204ENST00000401473 PLS1Q14651 629 aa18.48■□□□□ 0.55
HMGA1-204ENST00000401473 PORCNQ9H237 461 aa18.48■□□□□ 0.55
HMGA1-204ENST00000401473 CPLX1O14810 134 aa18.48■□□□□ 0.55
HMGA1-204ENST00000401473 CTCFP49711 727 aaPredicted RBP18.48■□□□□ 0.55
HMGA1-204ENST00000401473 NOM1Q5C9Z4 860 aaKnown RBP18.48■□□□□ 0.55
HMGA1-204ENST00000401473 GTF3C2Q8WUA4 911 aaPredicted RBP18.48■□□□□ 0.55
HMGA1-204ENST00000401473 MOV10L1Q9BXT6 1211 aaKnown RBP18.48■□□□□ 0.55
HMGA1-204ENST00000401473 PNMA6FA0A0J9YX94 578 aa18.47■□□□□ 0.55
HMGA1-204ENST00000401473 ECM2O94769 699 aaPredicted RBP18.47■□□□□ 0.55
HMGA1-204ENST00000401473 ICAM1P05362 532 aa18.47■□□□□ 0.55
HMGA1-204ENST00000401473 CTGFP29279 349 aa18.47■□□□□ 0.55
HMGA1-204ENST00000401473 SLC4A3P48751 1232 aa18.47■□□□□ 0.55
HMGA1-204ENST00000401473 SP3Q02447 781 aa18.47■□□□□ 0.55
HMGA1-204ENST00000401473 PKN1Q16512 942 aa18.47■□□□□ 0.55
HMGA1-204ENST00000401473 SNRNP48Q6IEG0 339 aaKnown RBP18.47■□□□□ 0.55
HMGA1-204ENST00000401473 NSUN7Q8NE18 718 aaKnown RBP18.47■□□□□ 0.55
HMGA1-204ENST00000401473 RRP36Q96EU6 259 aaKnown RBP18.47■□□□□ 0.55
HMGA1-204ENST00000401473 JAK2O60674 1132 aa18.46■□□□□ 0.55
HMGA1-204ENST00000401473 FDPSP14324 419 aaKnown RBP18.46■□□□□ 0.55
HMGA1-204ENST00000401473 OAZ1P54368 228 aa18.46■□□□□ 0.55
HMGA1-204ENST00000401473 SLC26A6Q9BXS9 759 aa18.46■□□□□ 0.55
HMGA1-204ENST00000401473 TEX13BQ9BXU2 312 aa18.46■□□□□ 0.55
HMGA1-204ENST00000401473 ARHGAP39Q9C0H5 1083 aa18.46■□□□□ 0.55
HMGA1-204ENST00000401473 EFCC1Q9HA90 598 aa18.46■□□□□ 0.55
HMGA1-204ENST00000401473 PRPF3O43395 683 aaKnown RBP18.46■□□□□ 0.54
HMGA1-204ENST00000401473 USH1GQ495M9 461 aa18.46■□□□□ 0.54
HMGA1-204ENST00000401473 COA7Q96BR5 231 aa18.46■□□□□ 0.54
HMGA1-204ENST00000401473 RNF26Q9BY78 433 aaPredicted RBP18.46■□□□□ 0.54
HMGA1-204ENST00000401473 CTDP1Q9Y5B0 961 aaPredicted RBP18.46■□□□□ 0.54
HMGA1-204ENST00000401473 CASP8AP2Q9UKL3 1982 aa18.46■□□□□ 0.54
HMGA1-204ENST00000401473 K7ELQ4 463 aaPredicted RBP18.45■□□□□ 0.54
HMGA1-204ENST00000401473 FMNL1O95466 1100 aaPredicted RBP18.45■□□□□ 0.54
HMGA1-204ENST00000401473 ERCC3P19447 782 aa18.45■□□□□ 0.54
HMGA1-204ENST00000401473 LACTBP83111 547 aaPredicted RBP18.45■□□□□ 0.54
HMGA1-204ENST00000401473 FBXO11Q86XK2 927 aa18.45■□□□□ 0.54
HMGA1-204ENST00000401473 RIOX2Q8IUF8 465 aa18.45■□□□□ 0.54
HMGA1-204ENST00000401473 CCPG1Q9ULG6 757 aa18.45■□□□□ 0.54
HMGA1-204ENST00000401473 ZNFX1Q9P2E3 1918 aaKnown RBP18.44■□□□□ 0.54
HMGA1-204ENST00000401473 FKTNO75072 461 aa18.44■□□□□ 0.54
HMGA1-204ENST00000401473 SSRP1Q08945 709 aaKnown RBP18.44■□□□□ 0.54
HMGA1-204ENST00000401473 MUM1L1Q5H9M0 696 aa18.44■□□□□ 0.54
HMGA1-204ENST00000401473 CPLX2Q6PUV4 134 aaKnown RBP18.44■□□□□ 0.54
HMGA1-204ENST00000401473 AMNQ9BXJ7 453 aa18.44■□□□□ 0.54
HMGA1-204ENST00000401473 HOMER2Q9NSB8 354 aa18.44■□□□□ 0.54
HMGA1-204ENST00000401473 PCDHA1Q9Y5I3 950 aa18.44■□□□□ 0.54
HMGA1-204ENST00000401473 ALAS1P13196 640 aa18.43■□□□□ 0.54
HMGA1-204ENST00000401473 CUL4AQ13619 759 aa18.43■□□□□ 0.54
HMGA1-204ENST00000401473 PFKFB3Q16875 520 aaPredicted RBP18.43■□□□□ 0.54
HMGA1-204ENST00000401473 TYW1BQ6NUM6 668 aa18.43■□□□□ 0.54
HMGA1-204ENST00000401473 CD99L2Q8TCZ2 262 aa18.43■□□□□ 0.54
HMGA1-204ENST00000401473 GPKOWQ92917 476 aaPredicted RBP eCLIP18.43■□□□□ 0.543e-8■■■■□ 26
HMGA1-204ENST00000401473 SHISA4Q96DD7 197 aa18.43■□□□□ 0.54
HMGA1-204ENST00000401473 DDX11Q96FC9 970 aa18.43■□□□□ 0.54
HMGA1-204ENST00000401473 AIFM3Q96NN9 605 aa18.43■□□□□ 0.54
HMGA1-204ENST00000401473 TSHZ2Q9NRE2 1034 aa18.43■□□□□ 0.54
HMGA1-204ENST00000401473 SEC63Q9UGP8 760 aaKnown RBP18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms